Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05710 and MPMX19_05711 are separated by 269 nucleotides MPMX19_05711 and MPMX19_05712 are separated by 2 nucleotides
MPMX19_05710: MPMX19_05710 - Uric acid transporter UacT, at 429,591 to 430,955
_05710
MPMX19_05711: MPMX19_05711 - hypothetical protein, at 431,225 to 431,563
_05711
MPMX19_05712: MPMX19_05712 - Beta-glucosidase A, at 431,566 to 432,912
_05712
Position (kb) 431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 430.621 kb on + strand, within MPMX19_05710 at 430.621 kb on + strand, within MPMX19_05710 at 430.621 kb on + strand, within MPMX19_05710 at 430.621 kb on + strand, within MPMX19_05710 at 430.621 kb on + strand, within MPMX19_05710 at 430.621 kb on + strand, within MPMX19_05710 at 430.621 kb on + strand, within MPMX19_05710 at 430.621 kb on + strand, within MPMX19_05710 at 430.621 kb on + strand, within MPMX19_05710 at 430.622 kb on - strand, within MPMX19_05710 at 430.622 kb on - strand, within MPMX19_05710 at 430.622 kb on - strand, within MPMX19_05710 at 430.622 kb on - strand, within MPMX19_05710 at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.858 kb on + strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 430.859 kb on - strand at 431.089 kb on + strand at 431.089 kb on + strand at 431.089 kb on + strand at 431.089 kb on + strand at 431.090 kb on - strand at 431.114 kb on + strand at 431.154 kb on + strand at 431.154 kb on + strand at 431.155 kb on - strand at 431.155 kb on - strand at 431.155 kb on - strand at 431.155 kb on - strand at 431.162 kb on - strand at 431.175 kb on + strand at 431.175 kb on + strand at 431.175 kb on + strand at 431.175 kb on + strand at 431.175 kb on + strand at 431.175 kb on + strand at 431.175 kb on + strand at 431.175 kb on + strand at 431.176 kb on - strand at 431.176 kb on - strand at 431.176 kb on - strand at 431.176 kb on - strand at 431.176 kb on - strand at 431.176 kb on - strand at 431.176 kb on - strand at 431.247 kb on + strand at 431.247 kb on + strand at 431.247 kb on + strand at 431.247 kb on + strand at 431.248 kb on - strand at 431.248 kb on - strand at 431.248 kb on - strand at 431.300 kb on + strand, within MPMX19_05711 at 431.300 kb on + strand, within MPMX19_05711 at 431.300 kb on + strand, within MPMX19_05711 at 431.301 kb on - strand, within MPMX19_05711 at 431.301 kb on - strand, within MPMX19_05711 at 431.301 kb on - strand, within MPMX19_05711 at 431.301 kb on - strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.390 kb on + strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.391 kb on - strand, within MPMX19_05711 at 431.489 kb on + strand, within MPMX19_05711 at 431.489 kb on + strand, within MPMX19_05711 at 431.489 kb on + strand, within MPMX19_05711 at 431.489 kb on + strand, within MPMX19_05711 at 431.489 kb on + strand, within MPMX19_05711 at 431.489 kb on + strand, within MPMX19_05711 at 431.489 kb on + strand, within MPMX19_05711 at 431.490 kb on - strand, within MPMX19_05711 at 431.490 kb on - strand, within MPMX19_05711 at 431.490 kb on - strand, within MPMX19_05711 at 431.490 kb on - strand, within MPMX19_05711 at 431.490 kb on - strand, within MPMX19_05711 at 431.490 kb on - strand, within MPMX19_05711 at 431.492 kb on + strand, within MPMX19_05711 at 431.492 kb on + strand, within MPMX19_05711 at 431.492 kb on + strand, within MPMX19_05711 at 431.492 kb on + strand, within MPMX19_05711 at 431.492 kb on + strand, within MPMX19_05711 at 431.492 kb on + strand, within MPMX19_05711 at 431.492 kb on + strand, within MPMX19_05711 at 431.492 kb on + strand, within MPMX19_05711 at 431.492 kb on + strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.493 kb on - strand, within MPMX19_05711 at 431.641 kb on + strand at 431.641 kb on + strand at 431.641 kb on + strand at 431.642 kb on - strand at 431.642 kb on - strand at 431.758 kb on + strand, within MPMX19_05712 at 431.759 kb on - strand, within MPMX19_05712 at 431.759 kb on - strand, within MPMX19_05712 at 431.759 kb on - strand, within MPMX19_05712 at 431.759 kb on - strand, within MPMX19_05712 at 431.759 kb on - strand, within MPMX19_05712 at 431.759 kb on - strand, within MPMX19_05712 at 431.759 kb on - strand, within MPMX19_05712 at 431.812 kb on + strand, within MPMX19_05712 at 431.813 kb on - strand, within MPMX19_05712 at 431.813 kb on - strand, within MPMX19_05712 at 431.813 kb on - strand, within MPMX19_05712 at 431.888 kb on - strand, within MPMX19_05712 at 431.888 kb on - strand, within MPMX19_05712 at 431.888 kb on - strand, within MPMX19_05712 at 431.888 kb on - strand, within MPMX19_05712 at 431.888 kb on - strand, within MPMX19_05712 at 431.888 kb on - strand, within MPMX19_05712 at 431.888 kb on - strand, within MPMX19_05712 at 431.944 kb on + strand, within MPMX19_05712 at 431.944 kb on + strand, within MPMX19_05712 at 431.944 kb on + strand, within MPMX19_05712 at 431.944 kb on + strand, within MPMX19_05712 at 431.944 kb on + strand, within MPMX19_05712 at 431.944 kb on + strand, within MPMX19_05712 at 431.945 kb on - strand, within MPMX19_05712 at 431.945 kb on - strand, within MPMX19_05712 at 431.945 kb on - strand, within MPMX19_05712 at 431.945 kb on - strand, within MPMX19_05712 at 431.945 kb on - strand, within MPMX19_05712 at 431.945 kb on - strand, within MPMX19_05712 at 431.945 kb on - strand, within MPMX19_05712 at 431.945 kb on - strand, within MPMX19_05712 at 432.013 kb on + strand, within MPMX19_05712 at 432.014 kb on - strand, within MPMX19_05712 at 432.022 kb on + strand, within MPMX19_05712 at 432.022 kb on + strand, within MPMX19_05712 at 432.022 kb on + strand, within MPMX19_05712 at 432.023 kb on - strand, within MPMX19_05712 at 432.023 kb on - strand, within MPMX19_05712 at 432.023 kb on - strand, within MPMX19_05712 at 432.023 kb on - strand, within MPMX19_05712 at 432.047 kb on - strand, within MPMX19_05712 at 432.362 kb on - strand, within MPMX19_05712 at 432.502 kb on + strand, within MPMX19_05712 at 432.502 kb on + strand, within MPMX19_05712 at 432.502 kb on + strand, within MPMX19_05712 at 432.503 kb on - strand, within MPMX19_05712 at 432.503 kb on - strand, within MPMX19_05712
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 430,621 + MPMX19_05710 0.75 -1.3 430,621 + MPMX19_05710 0.75 -1.8 430,621 + MPMX19_05710 0.75 -0.8 430,621 + MPMX19_05710 0.75 -0.7 430,621 + MPMX19_05710 0.75 -0.7 430,621 + MPMX19_05710 0.75 -1.0 430,621 + MPMX19_05710 0.75 -2.1 430,621 + MPMX19_05710 0.75 -0.4 430,621 + MPMX19_05710 0.75 -1.3 430,622 - MPMX19_05710 0.76 -0.4 430,622 - MPMX19_05710 0.76 -0.5 430,622 - MPMX19_05710 0.76 -1.0 430,622 - MPMX19_05710 0.76 -0.2 430,858 + -2.1 430,858 + -1.0 430,858 + -0.4 430,858 + -0.9 430,858 + +0.8 430,858 + -0.3 430,858 + -0.9 430,858 + -0.1 430,858 + -1.6 430,858 + +0.4 430,858 + -1.2 430,858 + +0.0 430,858 + +0.8 430,858 + -0.1 430,858 + +1.0 430,858 + -0.4 430,858 + -0.1 430,858 + -1.2 430,858 + -0.1 430,858 + -1.6 430,858 + +0.8 430,858 + +0.5 430,858 + -0.5 430,858 + -1.7 430,858 + -0.6 430,859 - +0.6 430,859 - -0.6 430,859 - +0.5 430,859 - -0.3 430,859 - +0.6 430,859 - +0.0 430,859 - +0.0 430,859 - +0.6 430,859 - -1.9 430,859 - +0.9 430,859 - -0.8 430,859 - +0.6 430,859 - +0.6 430,859 - -0.1 430,859 - -1.0 430,859 - +0.8 430,859 - +1.6 430,859 - +0.7 430,859 - -0.3 430,859 - +0.6 430,859 - +0.4 430,859 - -2.0 430,859 - +0.3 430,859 - -0.1 430,859 - -1.0 430,859 - -1.8 431,089 + +0.1 431,089 + -0.7 431,089 + -1.7 431,089 + +0.2 431,090 - -1.0 431,114 + +0.0 431,154 + -0.1 431,154 + -0.1 431,155 - -2.0 431,155 - -0.1 431,155 - -0.7 431,155 - -2.6 431,162 - -0.5 431,175 + -1.4 431,175 + +0.3 431,175 + -3.0 431,175 + -0.9 431,175 + -0.7 431,175 + -0.2 431,175 + +0.2 431,175 + +0.3 431,176 - -0.1 431,176 - +0.0 431,176 - +1.3 431,176 - -0.9 431,176 - +0.8 431,176 - -0.9 431,176 - -1.1 431,247 + +1.2 431,247 + +0.6 431,247 + +0.2 431,247 + -0.8 431,248 - -2.8 431,248 - -0.6 431,248 - +0.6 431,300 + MPMX19_05711 0.22 +0.2 431,300 + MPMX19_05711 0.22 -1.4 431,300 + MPMX19_05711 0.22 +0.8 431,301 - MPMX19_05711 0.22 -0.4 431,301 - MPMX19_05711 0.22 -0.6 431,301 - MPMX19_05711 0.22 -1.3 431,301 - MPMX19_05711 0.22 -0.7 431,390 + MPMX19_05711 0.49 -0.8 431,390 + MPMX19_05711 0.49 -1.2 431,390 + MPMX19_05711 0.49 +0.2 431,390 + MPMX19_05711 0.49 +1.2 431,390 + MPMX19_05711 0.49 +0.3 431,390 + MPMX19_05711 0.49 -1.0 431,390 + MPMX19_05711 0.49 -0.5 431,390 + MPMX19_05711 0.49 -0.5 431,390 + MPMX19_05711 0.49 +0.2 431,390 + MPMX19_05711 0.49 +0.9 431,390 + MPMX19_05711 0.49 +0.0 431,390 + MPMX19_05711 0.49 -1.1 431,391 - MPMX19_05711 0.49 -0.4 431,391 - MPMX19_05711 0.49 -0.4 431,391 - MPMX19_05711 0.49 +0.6 431,391 - MPMX19_05711 0.49 -0.2 431,391 - MPMX19_05711 0.49 -0.8 431,391 - MPMX19_05711 0.49 +0.6 431,391 - MPMX19_05711 0.49 -0.8 431,391 - MPMX19_05711 0.49 -0.6 431,391 - MPMX19_05711 0.49 -1.7 431,391 - MPMX19_05711 0.49 -0.8 431,391 - MPMX19_05711 0.49 -0.5 431,391 - MPMX19_05711 0.49 -1.2 431,489 + MPMX19_05711 0.78 -0.7 431,489 + MPMX19_05711 0.78 -0.1 431,489 + MPMX19_05711 0.78 +0.4 431,489 + MPMX19_05711 0.78 -0.1 431,489 + MPMX19_05711 0.78 -0.7 431,489 + MPMX19_05711 0.78 -0.2 431,489 + MPMX19_05711 0.78 -0.3 431,490 - MPMX19_05711 0.78 -0.3 431,490 - MPMX19_05711 0.78 -1.6 431,490 - MPMX19_05711 0.78 -0.1 431,490 - MPMX19_05711 0.78 -0.6 431,490 - MPMX19_05711 0.78 -1.1 431,490 - MPMX19_05711 0.78 +1.2 431,492 + MPMX19_05711 0.79 -0.2 431,492 + MPMX19_05711 0.79 +1.0 431,492 + MPMX19_05711 0.79 +0.1 431,492 + MPMX19_05711 0.79 -0.3 431,492 + MPMX19_05711 0.79 -0.1 431,492 + MPMX19_05711 0.79 -1.2 431,492 + MPMX19_05711 0.79 -0.2 431,492 + MPMX19_05711 0.79 -0.0 431,492 + MPMX19_05711 0.79 +0.8 431,493 - MPMX19_05711 0.79 -1.2 431,493 - MPMX19_05711 0.79 -0.4 431,493 - MPMX19_05711 0.79 -0.5 431,493 - MPMX19_05711 0.79 -0.4 431,493 - MPMX19_05711 0.79 -1.0 431,493 - MPMX19_05711 0.79 +0.1 431,493 - MPMX19_05711 0.79 -1.3 431,493 - MPMX19_05711 0.79 +1.7 431,493 - MPMX19_05711 0.79 -1.6 431,493 - MPMX19_05711 0.79 -0.2 431,493 - MPMX19_05711 0.79 +2.4 431,493 - MPMX19_05711 0.79 -0.4 431,493 - MPMX19_05711 0.79 -0.4 431,493 - MPMX19_05711 0.79 -1.1 431,493 - MPMX19_05711 0.79 -0.2 431,493 - MPMX19_05711 0.79 +0.4 431,493 - MPMX19_05711 0.79 -0.0 431,493 - MPMX19_05711 0.79 -2.1 431,641 + +0.1 431,641 + -0.8 431,641 + -1.8 431,642 - +0.9 431,642 - +0.1 431,758 + MPMX19_05712 0.14 +0.4 431,759 - MPMX19_05712 0.14 +1.2 431,759 - MPMX19_05712 0.14 -0.3 431,759 - MPMX19_05712 0.14 -0.2 431,759 - MPMX19_05712 0.14 +0.0 431,759 - MPMX19_05712 0.14 -0.4 431,759 - MPMX19_05712 0.14 -1.8 431,759 - MPMX19_05712 0.14 -0.8 431,812 + MPMX19_05712 0.18 +0.0 431,813 - MPMX19_05712 0.18 -0.2 431,813 - MPMX19_05712 0.18 +1.0 431,813 - MPMX19_05712 0.18 -0.4 431,888 - MPMX19_05712 0.24 +0.9 431,888 - MPMX19_05712 0.24 -1.1 431,888 - MPMX19_05712 0.24 +0.4 431,888 - MPMX19_05712 0.24 +0.2 431,888 - MPMX19_05712 0.24 +1.2 431,888 - MPMX19_05712 0.24 -0.6 431,888 - MPMX19_05712 0.24 -0.1 431,944 + MPMX19_05712 0.28 -0.6 431,944 + MPMX19_05712 0.28 +0.8 431,944 + MPMX19_05712 0.28 +1.0 431,944 + MPMX19_05712 0.28 -1.4 431,944 + MPMX19_05712 0.28 +1.0 431,944 + MPMX19_05712 0.28 -0.4 431,945 - MPMX19_05712 0.28 -2.3 431,945 - MPMX19_05712 0.28 -0.1 431,945 - MPMX19_05712 0.28 +1.3 431,945 - MPMX19_05712 0.28 +0.8 431,945 - MPMX19_05712 0.28 +0.5 431,945 - MPMX19_05712 0.28 -1.0 431,945 - MPMX19_05712 0.28 -1.6 431,945 - MPMX19_05712 0.28 +0.7 432,013 + MPMX19_05712 0.33 -0.4 432,014 - MPMX19_05712 0.33 -2.1 432,022 + MPMX19_05712 0.34 -0.1 432,022 + MPMX19_05712 0.34 -1.4 432,022 + MPMX19_05712 0.34 +0.4 432,023 - MPMX19_05712 0.34 +0.0 432,023 - MPMX19_05712 0.34 +0.2 432,023 - MPMX19_05712 0.34 -0.0 432,023 - MPMX19_05712 0.34 +0.4 432,047 - MPMX19_05712 0.36 -0.7 432,362 - MPMX19_05712 0.59 -2.4 432,502 + MPMX19_05712 0.69 -0.7 432,502 + MPMX19_05712 0.69 +1.6 432,502 + MPMX19_05712 0.69 -0.5 432,503 - MPMX19_05712 0.70 +0.9 432,503 - MPMX19_05712 0.70 +0.4
Or see this region's nucleotide sequence