Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05379 and MPMX19_05380 are separated by 712 nucleotides MPMX19_05380 and MPMX19_05381 are separated by 143 nucleotides
MPMX19_05379: MPMX19_05379 - hypothetical protein, at 52,826 to 54,238
_05379
MPMX19_05380: MPMX19_05380 - hypothetical protein, at 54,951 to 55,703
_05380
MPMX19_05381: MPMX19_05381 - Glycine cleavage system transcriptional activator, at 55,847 to 56,734
_05381
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.239 kb on - strand at 54.296 kb on - strand at 54.296 kb on - strand at 54.296 kb on - strand at 54.296 kb on - strand at 54.333 kb on - strand at 54.333 kb on - strand at 54.526 kb on + strand at 54.526 kb on + strand at 54.526 kb on + strand at 54.566 kb on + strand at 54.566 kb on + strand at 54.566 kb on + strand at 54.566 kb on + strand at 54.567 kb on - strand at 54.567 kb on - strand at 54.630 kb on + strand at 54.630 kb on + strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.801 kb on + strand at 54.801 kb on + strand at 54.801 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.841 kb on + strand at 54.899 kb on + strand at 54.925 kb on - strand at 54.937 kb on + strand at 54.937 kb on + strand at 54.937 kb on + strand at 54.938 kb on - strand at 54.988 kb on + strand at 54.989 kb on - strand at 54.989 kb on - strand at 55.016 kb on - strand at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 56.303 kb on + strand, within MPMX19_05381 at 56.304 kb on - strand, within MPMX19_05381 at 56.304 kb on - strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.645 kb on + strand, within MPMX19_05381 at 56.645 kb on + strand, within MPMX19_05381 at 56.645 kb on + strand, within MPMX19_05381 at 56.645 kb on + strand, within MPMX19_05381 at 56.645 kb on + strand, within MPMX19_05381 at 56.646 kb on - strand at 56.646 kb on - strand at 56.646 kb on - strand at 56.646 kb on - strand at 56.646 kb on - strand at 56.646 kb on - strand at 56.646 kb on - strand at 56.654 kb on + strand at 56.654 kb on + strand at 56.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 54,096 - MPMX19_05379 0.90 -1.4 54,096 - MPMX19_05379 0.90 -0.7 54,096 - MPMX19_05379 0.90 -0.6 54,096 - MPMX19_05379 0.90 -0.2 54,096 - MPMX19_05379 0.90 -1.7 54,096 - MPMX19_05379 0.90 -0.1 54,096 - MPMX19_05379 0.90 +0.5 54,096 - MPMX19_05379 0.90 -0.9 54,096 - MPMX19_05379 0.90 -1.2 54,239 - +1.2 54,296 - -2.1 54,296 - -0.3 54,296 - -0.7 54,296 - -0.5 54,333 - -0.2 54,333 - -0.7 54,526 + +2.5 54,526 + +0.3 54,526 + +1.2 54,566 + -0.4 54,566 + +1.6 54,566 + -0.6 54,566 + -0.1 54,567 - -1.1 54,567 - -1.1 54,630 + -1.7 54,630 + -1.4 54,631 - -0.2 54,631 - -0.3 54,631 - -2.3 54,631 - -0.5 54,631 - -0.4 54,801 + -0.4 54,801 + -1.0 54,801 + +0.6 54,818 + +0.3 54,818 + +0.2 54,818 + -1.7 54,818 + -0.2 54,818 + +0.5 54,818 + -1.2 54,818 + +0.3 54,818 + +0.1 54,818 + -3.2 54,818 + -0.4 54,818 + -0.1 54,818 + -0.4 54,818 + -0.7 54,818 + -0.9 54,818 + -0.7 54,819 - -0.4 54,819 - -0.8 54,819 - +0.3 54,819 - -2.1 54,819 - -2.4 54,819 - -0.1 54,841 + +0.1 54,899 + -1.6 54,925 - -0.7 54,937 + -2.1 54,937 + -0.7 54,937 + -2.1 54,938 - -0.3 54,988 + +0.6 54,989 - +1.1 54,989 - +0.3 55,016 - -0.7 55,165 + MPMX19_05380 0.28 +0.9 55,165 + MPMX19_05380 0.28 +0.4 55,165 + MPMX19_05380 0.28 -1.8 55,165 + MPMX19_05380 0.28 -1.9 55,165 + MPMX19_05380 0.28 -1.5 55,165 + MPMX19_05380 0.28 -0.8 55,165 + MPMX19_05380 0.28 -0.7 55,166 - MPMX19_05380 0.29 -0.7 55,166 - MPMX19_05380 0.29 -1.3 55,166 - MPMX19_05380 0.29 -0.1 55,166 - MPMX19_05380 0.29 -1.2 55,166 - MPMX19_05380 0.29 -0.3 55,166 - MPMX19_05380 0.29 -1.1 55,166 - MPMX19_05380 0.29 -2.2 56,303 + MPMX19_05381 0.51 +0.4 56,304 - MPMX19_05381 0.51 +2.1 56,304 - MPMX19_05381 0.51 +0.7 56,470 + MPMX19_05381 0.70 -1.9 56,470 + MPMX19_05381 0.70 -0.8 56,470 + MPMX19_05381 0.70 -0.6 56,470 + MPMX19_05381 0.70 +0.1 56,470 + MPMX19_05381 0.70 -0.1 56,470 + MPMX19_05381 0.70 -0.8 56,470 + MPMX19_05381 0.70 -0.7 56,470 + MPMX19_05381 0.70 -0.5 56,470 + MPMX19_05381 0.70 +0.5 56,470 + MPMX19_05381 0.70 +0.1 56,470 + MPMX19_05381 0.70 -0.3 56,470 + MPMX19_05381 0.70 +1.4 56,471 - MPMX19_05381 0.70 +0.1 56,471 - MPMX19_05381 0.70 +0.8 56,471 - MPMX19_05381 0.70 -0.5 56,471 - MPMX19_05381 0.70 -0.5 56,471 - MPMX19_05381 0.70 -1.4 56,471 - MPMX19_05381 0.70 -1.4 56,471 - MPMX19_05381 0.70 +0.1 56,471 - MPMX19_05381 0.70 -1.4 56,471 - MPMX19_05381 0.70 +0.1 56,471 - MPMX19_05381 0.70 -0.2 56,471 - MPMX19_05381 0.70 -1.8 56,471 - MPMX19_05381 0.70 -1.2 56,471 - MPMX19_05381 0.70 -1.9 56,471 - MPMX19_05381 0.70 -1.5 56,471 - MPMX19_05381 0.70 -0.2 56,471 - MPMX19_05381 0.70 -0.8 56,471 - MPMX19_05381 0.70 +0.2 56,471 - MPMX19_05381 0.70 -0.7 56,510 + MPMX19_05381 0.75 +1.6 56,510 + MPMX19_05381 0.75 +0.3 56,510 + MPMX19_05381 0.75 -1.4 56,510 + MPMX19_05381 0.75 +0.1 56,510 + MPMX19_05381 0.75 +0.2 56,510 + MPMX19_05381 0.75 -0.5 56,510 + MPMX19_05381 0.75 +0.3 56,510 + MPMX19_05381 0.75 -1.0 56,510 + MPMX19_05381 0.75 -0.5 56,510 + MPMX19_05381 0.75 -0.7 56,510 + MPMX19_05381 0.75 -0.9 56,510 + MPMX19_05381 0.75 -1.1 56,510 + MPMX19_05381 0.75 -1.3 56,510 + MPMX19_05381 0.75 -0.4 56,510 + MPMX19_05381 0.75 -0.2 56,510 + MPMX19_05381 0.75 +1.6 56,510 + MPMX19_05381 0.75 -0.4 56,510 + MPMX19_05381 0.75 -0.3 56,510 + MPMX19_05381 0.75 +1.6 56,510 + MPMX19_05381 0.75 -0.0 56,510 + MPMX19_05381 0.75 +0.1 56,510 + MPMX19_05381 0.75 +0.3 56,510 + MPMX19_05381 0.75 -0.5 56,510 + MPMX19_05381 0.75 -1.4 56,511 - MPMX19_05381 0.75 -0.4 56,511 - MPMX19_05381 0.75 -0.1 56,511 - MPMX19_05381 0.75 +1.1 56,511 - MPMX19_05381 0.75 -1.2 56,511 - MPMX19_05381 0.75 -0.2 56,511 - MPMX19_05381 0.75 +0.9 56,511 - MPMX19_05381 0.75 -2.1 56,511 - MPMX19_05381 0.75 +1.2 56,511 - MPMX19_05381 0.75 -0.0 56,511 - MPMX19_05381 0.75 -0.2 56,511 - MPMX19_05381 0.75 -0.5 56,570 + MPMX19_05381 0.81 +0.2 56,570 + MPMX19_05381 0.81 -0.2 56,570 + MPMX19_05381 0.81 -0.5 56,570 + MPMX19_05381 0.81 -0.7 56,570 + MPMX19_05381 0.81 -1.2 56,570 + MPMX19_05381 0.81 +0.9 56,571 - MPMX19_05381 0.82 -0.3 56,571 - MPMX19_05381 0.82 -0.6 56,571 - MPMX19_05381 0.82 -1.5 56,571 - MPMX19_05381 0.82 +0.2 56,571 - MPMX19_05381 0.82 -1.2 56,571 - MPMX19_05381 0.82 -1.9 56,571 - MPMX19_05381 0.82 -0.6 56,571 - MPMX19_05381 0.82 +0.2 56,571 - MPMX19_05381 0.82 -0.2 56,571 - MPMX19_05381 0.82 -0.8 56,571 - MPMX19_05381 0.82 -0.7 56,645 + MPMX19_05381 0.90 +0.2 56,645 + MPMX19_05381 0.90 +0.2 56,645 + MPMX19_05381 0.90 -0.9 56,645 + MPMX19_05381 0.90 -0.5 56,645 + MPMX19_05381 0.90 -0.1 56,646 - +2.1 56,646 - -0.1 56,646 - +0.4 56,646 - +0.1 56,646 - +0.3 56,646 - +0.3 56,646 - +0.3 56,654 + +0.6 56,654 + +0.6 56,655 - -0.8
Or see this region's nucleotide sequence