Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05359 and MPMX19_05360 overlap by 4 nucleotides MPMX19_05360 and MPMX19_05361 are separated by 77 nucleotides MPMX19_05361 and MPMX19_05362 are separated by 107 nucleotides MPMX19_05362 and MPMX19_05363 are separated by 209 nucleotides
MPMX19_05359: MPMX19_05359 - hypothetical protein, at 34,864 to 36,135
_05359
MPMX19_05360: MPMX19_05360 - hypothetical protein, at 36,132 to 36,884
_05360
MPMX19_05361: MPMX19_05361 - CRP-like cAMP-activated global transcriptional regulator, at 36,962 to 37,672
_05361
MPMX19_05362: MPMX19_05362 - hypothetical protein, at 37,780 to 38,160
_05362
MPMX19_05363: MPMX19_05363 - D-beta-hydroxybutyrate dehydrogenase, at 38,370 to 39,158
_05363
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.074 kb on - strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.325 kb on - strand, within MPMX19_05360 at 36.325 kb on - strand, within MPMX19_05360 at 36.341 kb on + strand, within MPMX19_05360 at 36.342 kb on - strand, within MPMX19_05360 at 36.342 kb on - strand, within MPMX19_05360 at 36.393 kb on + strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.502 kb on - strand, within MPMX19_05360 at 36.502 kb on - strand, within MPMX19_05360 at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.898 kb on - strand at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.609 kb on + strand at 37.609 kb on + strand at 37.610 kb on - strand at 37.610 kb on - strand at 37.670 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.691 kb on + strand at 37.691 kb on + strand at 37.691 kb on + strand at 37.692 kb on - strand at 37.692 kb on - strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.821 kb on + strand, within MPMX19_05362 at 37.822 kb on - strand, within MPMX19_05362 at 37.897 kb on + strand, within MPMX19_05362 at 37.897 kb on + strand, within MPMX19_05362 at 37.935 kb on + strand, within MPMX19_05362 at 37.935 kb on + strand, within MPMX19_05362 at 37.935 kb on + strand, within MPMX19_05362 at 37.936 kb on - strand, within MPMX19_05362 at 38.243 kb on - strand at 38.304 kb on + strand at 38.304 kb on + strand at 38.344 kb on + strand at 38.344 kb on + strand at 38.344 kb on + strand at 38.345 kb on - strand at 38.345 kb on - strand at 38.345 kb on - strand at 38.345 kb on - strand at 38.372 kb on - strand at 38.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 36,073 + -0.7 36,073 + +0.4 36,073 + -0.3 36,073 + +0.6 36,073 + -0.1 36,073 + +0.8 36,073 + +0.3 36,073 + -1.1 36,074 - -0.4 36,144 + -1.4 36,144 + +0.1 36,144 + -0.6 36,144 + -0.2 36,144 + -0.1 36,144 + -0.6 36,144 + -1.2 36,144 + -0.0 36,144 + +0.6 36,144 + +0.4 36,144 + -0.8 36,145 - -0.7 36,145 - +0.2 36,145 - -0.1 36,145 - -0.3 36,145 - -1.9 36,145 - +0.8 36,204 + -1.0 36,204 + -1.2 36,204 + -0.1 36,204 + +1.9 36,204 + +1.1 36,204 + -0.8 36,204 + +0.6 36,205 - +1.1 36,205 - -0.1 36,205 - -1.4 36,205 - +0.3 36,205 - +1.6 36,205 - -1.1 36,205 - -1.7 36,205 - +0.1 36,205 - -0.2 36,325 - MPMX19_05360 0.26 -0.2 36,325 - MPMX19_05360 0.26 -0.7 36,341 + MPMX19_05360 0.28 -0.9 36,342 - MPMX19_05360 0.28 +1.1 36,342 - MPMX19_05360 0.28 +0.3 36,393 + MPMX19_05360 0.35 -0.1 36,394 - MPMX19_05360 0.35 +0.0 36,394 - MPMX19_05360 0.35 +0.3 36,394 - MPMX19_05360 0.35 -0.6 36,394 - MPMX19_05360 0.35 -0.6 36,394 - MPMX19_05360 0.35 -0.7 36,394 - MPMX19_05360 0.35 -0.7 36,501 + MPMX19_05360 0.49 -0.7 36,501 + MPMX19_05360 0.49 -0.1 36,501 + MPMX19_05360 0.49 +0.5 36,501 + MPMX19_05360 0.49 -0.2 36,501 + MPMX19_05360 0.49 -1.0 36,501 + MPMX19_05360 0.49 -0.8 36,502 - MPMX19_05360 0.49 -0.9 36,502 - MPMX19_05360 0.49 -1.2 36,883 - -2.2 36,883 - +0.3 36,883 - +0.4 36,883 - -0.8 36,883 - +1.5 36,898 - -0.2 37,460 + MPMX19_05361 0.70 -0.6 37,460 + MPMX19_05361 0.70 -0.2 37,460 + MPMX19_05361 0.70 -1.3 37,460 + MPMX19_05361 0.70 -2.4 37,460 + MPMX19_05361 0.70 -2.4 37,460 + MPMX19_05361 0.70 -1.5 37,461 - MPMX19_05361 0.70 -0.7 37,461 - MPMX19_05361 0.70 -1.7 37,461 - MPMX19_05361 0.70 +0.2 37,461 - MPMX19_05361 0.70 -1.1 37,471 + MPMX19_05361 0.72 -0.2 37,471 + MPMX19_05361 0.72 -0.0 37,471 + MPMX19_05361 0.72 -2.0 37,471 + MPMX19_05361 0.72 -1.2 37,472 - MPMX19_05361 0.72 -0.6 37,472 - MPMX19_05361 0.72 -1.3 37,472 - MPMX19_05361 0.72 -1.7 37,472 - MPMX19_05361 0.72 -1.7 37,472 - MPMX19_05361 0.72 -0.8 37,595 + MPMX19_05361 0.89 -0.9 37,595 + MPMX19_05361 0.89 +0.3 37,595 + MPMX19_05361 0.89 -0.8 37,595 + MPMX19_05361 0.89 -0.1 37,595 + MPMX19_05361 0.89 +0.1 37,595 + MPMX19_05361 0.89 -1.0 37,595 + MPMX19_05361 0.89 +0.3 37,595 + MPMX19_05361 0.89 -0.4 37,596 - MPMX19_05361 0.89 -2.2 37,596 - MPMX19_05361 0.89 -0.8 37,596 - MPMX19_05361 0.89 -2.2 37,596 - MPMX19_05361 0.89 -0.5 37,596 - MPMX19_05361 0.89 -1.9 37,609 + -0.4 37,609 + -1.1 37,610 - -0.5 37,610 - -1.3 37,670 + +0.3 37,683 + -0.9 37,683 + +0.5 37,683 + -1.5 37,683 + -0.2 37,683 + -0.1 37,683 + -0.8 37,683 + -0.5 37,683 + -1.4 37,683 + -0.4 37,684 - -0.2 37,684 - +0.8 37,684 - +0.2 37,684 - +0.6 37,691 + -2.4 37,691 + +1.0 37,691 + -1.0 37,692 - +0.1 37,692 - +0.2 37,728 + -0.8 37,728 + -0.5 37,728 + -0.5 37,728 + -0.3 37,728 + +0.2 37,728 + -1.1 37,728 + -1.2 37,728 + +0.2 37,729 - -0.1 37,729 - -0.2 37,729 - -0.2 37,729 - -0.6 37,821 + MPMX19_05362 0.11 +0.9 37,822 - MPMX19_05362 0.11 -0.6 37,897 + MPMX19_05362 0.31 -2.1 37,897 + MPMX19_05362 0.31 -1.4 37,935 + MPMX19_05362 0.41 -0.2 37,935 + MPMX19_05362 0.41 +0.1 37,935 + MPMX19_05362 0.41 +0.4 37,936 - MPMX19_05362 0.41 +0.6 38,243 - -0.4 38,304 + +1.3 38,304 + -0.2 38,344 + -2.4 38,344 + -0.7 38,344 + +1.6 38,345 - +0.1 38,345 - -0.2 38,345 - -1.7 38,345 - -0.5 38,372 - -0.7 38,372 - +0.2
Or see this region's nucleotide sequence