Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05236 and MPMX19_05237 are separated by 258 nucleotides MPMX19_05237 and MPMX19_05238 are separated by 0 nucleotides
MPMX19_05236: MPMX19_05236 - hypothetical protein, at 762,418 to 763,392
_05236
MPMX19_05237: MPMX19_05237 - Sensor histidine kinase RcsC, at 763,651 to 766,338
_05237
MPMX19_05238: MPMX19_05238 - Periplasmic dipeptide transport protein, at 766,339 to 767,961
_05238
Position (kb) 763
764
765
766
767 Strain fitness (log2 ratio) -2
-1
0
1
2 at 762.778 kb on + strand, within MPMX19_05236 at 762.779 kb on - strand, within MPMX19_05236 at 762.799 kb on + strand, within MPMX19_05236 at 762.800 kb on - strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.871 kb on + strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 762.872 kb on - strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.075 kb on + strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.076 kb on - strand, within MPMX19_05236 at 763.150 kb on + strand, within MPMX19_05236 at 763.151 kb on - strand, within MPMX19_05236 at 763.151 kb on - strand, within MPMX19_05236 at 763.390 kb on + strand at 763.405 kb on + strand at 763.420 kb on + strand at 763.494 kb on + strand at 763.523 kb on + strand at 763.523 kb on + strand at 763.523 kb on + strand at 763.524 kb on - strand at 763.524 kb on - strand at 763.524 kb on - strand at 763.524 kb on - strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.533 kb on + strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.534 kb on - strand at 763.610 kb on + strand at 763.610 kb on + strand at 763.757 kb on - strand at 763.786 kb on + strand at 763.787 kb on - strand at 763.825 kb on + strand at 763.825 kb on + strand at 763.825 kb on + strand at 763.825 kb on + strand at 763.826 kb on - strand at 763.826 kb on - strand at 763.826 kb on - strand at 763.826 kb on - strand at 763.826 kb on - strand at 763.826 kb on - strand at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.981 kb on + strand, within MPMX19_05237 at 763.982 kb on - strand, within MPMX19_05237 at 763.982 kb on - strand, within MPMX19_05237 at 763.982 kb on - strand, within MPMX19_05237 at 763.982 kb on - strand, within MPMX19_05237 at 763.982 kb on - strand, within MPMX19_05237 at 764.411 kb on - strand, within MPMX19_05237 at 764.411 kb on - strand, within MPMX19_05237 at 764.411 kb on - strand, within MPMX19_05237 at 764.411 kb on - strand, within MPMX19_05237 at 764.839 kb on + strand, within MPMX19_05237 at 764.839 kb on + strand, within MPMX19_05237 at 764.839 kb on + strand, within MPMX19_05237 at 764.878 kb on + strand, within MPMX19_05237 at 764.878 kb on + strand, within MPMX19_05237 at 764.878 kb on + strand, within MPMX19_05237 at 764.878 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.935 kb on - strand, within MPMX19_05237 at 766.078 kb on + strand at 766.189 kb on + strand at 766.189 kb on + strand at 766.190 kb on - strand at 766.190 kb on - strand at 766.190 kb on - strand at 766.191 kb on + strand at 766.192 kb on - strand at 766.294 kb on - strand at 766.448 kb on - strand at 766.591 kb on + strand, within MPMX19_05238 at 766.591 kb on + strand, within MPMX19_05238 at 766.592 kb on - strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.668 kb on + strand, within MPMX19_05238 at 766.669 kb on - strand, within MPMX19_05238 at 766.708 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.765 kb on + strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.772 kb on - strand, within MPMX19_05238 at 766.831 kb on - strand, within MPMX19_05238 at 766.962 kb on + strand, within MPMX19_05238 at 766.963 kb on - strand, within MPMX19_05238 at 766.963 kb on - strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.024 kb on - strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 762,778 + MPMX19_05236 0.37 +1.5 762,779 - MPMX19_05236 0.37 -0.3 762,799 + MPMX19_05236 0.39 -0.3 762,800 - MPMX19_05236 0.39 +0.2 762,871 + MPMX19_05236 0.46 -0.1 762,871 + MPMX19_05236 0.46 +0.6 762,871 + MPMX19_05236 0.46 -0.7 762,871 + MPMX19_05236 0.46 -0.1 762,871 + MPMX19_05236 0.46 -1.0 762,871 + MPMX19_05236 0.46 +0.1 762,871 + MPMX19_05236 0.46 -0.3 762,871 + MPMX19_05236 0.46 -0.2 762,871 + MPMX19_05236 0.46 -0.5 762,871 + MPMX19_05236 0.46 -0.8 762,872 - MPMX19_05236 0.47 -0.6 762,872 - MPMX19_05236 0.47 +0.1 762,872 - MPMX19_05236 0.47 -0.8 762,872 - MPMX19_05236 0.47 -1.3 762,872 - MPMX19_05236 0.47 -0.0 762,872 - MPMX19_05236 0.47 -1.3 763,075 + MPMX19_05236 0.67 -0.0 763,075 + MPMX19_05236 0.67 -0.3 763,075 + MPMX19_05236 0.67 -0.8 763,075 + MPMX19_05236 0.67 -1.7 763,075 + MPMX19_05236 0.67 -1.2 763,075 + MPMX19_05236 0.67 -0.0 763,075 + MPMX19_05236 0.67 -1.4 763,075 + MPMX19_05236 0.67 -0.4 763,075 + MPMX19_05236 0.67 +0.5 763,075 + MPMX19_05236 0.67 +0.4 763,075 + MPMX19_05236 0.67 +0.7 763,075 + MPMX19_05236 0.67 -0.9 763,076 - MPMX19_05236 0.67 +0.2 763,076 - MPMX19_05236 0.67 -1.1 763,076 - MPMX19_05236 0.67 -1.3 763,076 - MPMX19_05236 0.67 +0.3 763,076 - MPMX19_05236 0.67 -0.5 763,076 - MPMX19_05236 0.67 -1.9 763,076 - MPMX19_05236 0.67 -0.5 763,076 - MPMX19_05236 0.67 -0.3 763,150 + MPMX19_05236 0.75 -0.8 763,151 - MPMX19_05236 0.75 +1.5 763,151 - MPMX19_05236 0.75 -1.2 763,390 + +0.3 763,405 + +0.3 763,420 + -0.2 763,494 + +0.6 763,523 + +0.1 763,523 + -1.7 763,523 + +0.1 763,524 - -1.8 763,524 - -0.6 763,524 - -1.7 763,524 - -1.0 763,533 + +1.5 763,533 + +0.1 763,533 + -0.3 763,533 + -1.7 763,533 + -0.8 763,533 + -1.0 763,533 + -0.4 763,534 - -0.7 763,534 - -0.9 763,534 - -0.5 763,534 - -0.7 763,534 - +0.2 763,534 - +0.3 763,534 - +1.0 763,610 + -0.1 763,610 + -0.3 763,757 - -0.3 763,786 + +0.2 763,787 - -0.3 763,825 + -0.7 763,825 + -0.7 763,825 + -0.0 763,825 + +1.0 763,826 - -0.5 763,826 - -0.4 763,826 - -0.3 763,826 - +0.5 763,826 - -0.4 763,826 - +0.6 763,981 + MPMX19_05237 0.12 +0.3 763,981 + MPMX19_05237 0.12 +0.2 763,981 + MPMX19_05237 0.12 +0.8 763,981 + MPMX19_05237 0.12 +1.1 763,981 + MPMX19_05237 0.12 -1.1 763,981 + MPMX19_05237 0.12 -0.1 763,981 + MPMX19_05237 0.12 -0.1 763,981 + MPMX19_05237 0.12 +0.1 763,982 - MPMX19_05237 0.12 +0.4 763,982 - MPMX19_05237 0.12 -1.0 763,982 - MPMX19_05237 0.12 +0.9 763,982 - MPMX19_05237 0.12 +1.0 763,982 - MPMX19_05237 0.12 +0.5 764,411 - MPMX19_05237 0.28 -0.6 764,411 - MPMX19_05237 0.28 +1.2 764,411 - MPMX19_05237 0.28 +0.3 764,411 - MPMX19_05237 0.28 -0.0 764,839 + MPMX19_05237 0.44 -1.3 764,839 + MPMX19_05237 0.44 -0.3 764,839 + MPMX19_05237 0.44 +0.7 764,878 + MPMX19_05237 0.46 -0.9 764,878 + MPMX19_05237 0.46 +0.3 764,878 + MPMX19_05237 0.46 +0.3 764,878 + MPMX19_05237 0.46 -0.7 765,850 + MPMX19_05237 0.82 +0.2 765,850 + MPMX19_05237 0.82 +0.2 765,850 + MPMX19_05237 0.82 +0.5 765,850 + MPMX19_05237 0.82 +0.2 765,850 + MPMX19_05237 0.82 -0.1 765,850 + MPMX19_05237 0.82 -1.5 765,851 - MPMX19_05237 0.82 -0.6 765,851 - MPMX19_05237 0.82 -1.5 765,851 - MPMX19_05237 0.82 +1.8 765,851 - MPMX19_05237 0.82 -0.1 765,851 - MPMX19_05237 0.82 +0.5 765,935 - MPMX19_05237 0.85 -0.2 766,078 + +1.0 766,189 + -1.0 766,189 + -0.1 766,190 - -1.8 766,190 - -0.1 766,190 - -0.0 766,191 + +1.0 766,192 - -0.1 766,294 - +1.5 766,448 - +1.3 766,591 + MPMX19_05238 0.16 -1.1 766,591 + MPMX19_05238 0.16 -1.8 766,592 - MPMX19_05238 0.16 -0.7 766,666 + MPMX19_05238 0.20 -0.6 766,666 + MPMX19_05238 0.20 -1.8 766,666 + MPMX19_05238 0.20 +0.2 766,666 + MPMX19_05238 0.20 -0.3 766,667 - MPMX19_05238 0.20 +0.5 766,667 - MPMX19_05238 0.20 -1.2 766,667 - MPMX19_05238 0.20 -0.8 766,667 - MPMX19_05238 0.20 -0.5 766,668 + MPMX19_05238 0.20 -2.6 766,669 - MPMX19_05238 0.20 +0.7 766,708 - MPMX19_05238 0.23 +0.6 766,747 - MPMX19_05238 0.25 +2.0 766,747 - MPMX19_05238 0.25 +0.0 766,747 - MPMX19_05238 0.25 -0.2 766,747 - MPMX19_05238 0.25 -0.7 766,765 + MPMX19_05238 0.26 +0.4 766,766 - MPMX19_05238 0.26 +0.2 766,766 - MPMX19_05238 0.26 -0.7 766,766 - MPMX19_05238 0.26 -0.5 766,766 - MPMX19_05238 0.26 -0.0 766,766 - MPMX19_05238 0.26 -0.3 766,771 + MPMX19_05238 0.27 +0.5 766,771 + MPMX19_05238 0.27 +0.6 766,771 + MPMX19_05238 0.27 +0.1 766,771 + MPMX19_05238 0.27 -0.4 766,771 + MPMX19_05238 0.27 +1.5 766,772 - MPMX19_05238 0.27 +0.0 766,831 - MPMX19_05238 0.30 -0.7 766,962 + MPMX19_05238 0.38 +1.2 766,963 - MPMX19_05238 0.38 -0.1 766,963 - MPMX19_05238 0.38 -0.5 766,999 + MPMX19_05238 0.41 -0.8 766,999 + MPMX19_05238 0.41 +0.3 766,999 + MPMX19_05238 0.41 +0.9 766,999 + MPMX19_05238 0.41 +0.5 766,999 + MPMX19_05238 0.41 +0.5 767,000 - MPMX19_05238 0.41 -0.4 767,000 - MPMX19_05238 0.41 +0.0 767,000 - MPMX19_05238 0.41 -0.2 767,000 - MPMX19_05238 0.41 -0.1 767,000 - MPMX19_05238 0.41 -0.3 767,000 - MPMX19_05238 0.41 -1.1 767,000 - MPMX19_05238 0.41 +0.5 767,000 - MPMX19_05238 0.41 +1.2 767,023 + MPMX19_05238 0.42 +0.4 767,023 + MPMX19_05238 0.42 -0.3 767,023 + MPMX19_05238 0.42 -0.2 767,023 + MPMX19_05238 0.42 +0.1 767,023 + MPMX19_05238 0.42 -0.3 767,024 - MPMX19_05238 0.42 +1.1 767,077 + MPMX19_05238 0.45 +0.1 767,077 + MPMX19_05238 0.45 -0.5 767,077 + MPMX19_05238 0.45 -1.3 767,077 + MPMX19_05238 0.45 -1.3 767,077 + MPMX19_05238 0.45 +0.3 767,078 - MPMX19_05238 0.46 -1.2 767,078 - MPMX19_05238 0.46 -1.4 767,078 - MPMX19_05238 0.46 +0.3 767,227 + MPMX19_05238 0.55 -0.7 767,227 + MPMX19_05238 0.55 -1.0 767,227 + MPMX19_05238 0.55 +0.5 767,227 + MPMX19_05238 0.55 -0.3 767,227 + MPMX19_05238 0.55 -1.2 767,227 + MPMX19_05238 0.55 -0.1 767,227 + MPMX19_05238 0.55 -0.1 767,227 + MPMX19_05238 0.55 +0.7 767,227 + MPMX19_05238 0.55 -0.1 767,228 - MPMX19_05238 0.55 -1.2 767,228 - MPMX19_05238 0.55 -2.0 767,228 - MPMX19_05238 0.55 +0.4 767,228 - MPMX19_05238 0.55 -0.3 767,228 - MPMX19_05238 0.55 +0.3 767,228 - MPMX19_05238 0.55 -0.4 767,228 - MPMX19_05238 0.55 +0.3 767,228 - MPMX19_05238 0.55 +0.0 767,228 - MPMX19_05238 0.55 -0.8 767,228 - MPMX19_05238 0.55 -0.3 767,228 - MPMX19_05238 0.55 +0.2 767,228 - MPMX19_05238 0.55 -0.4 767,228 - MPMX19_05238 0.55 -0.8 767,228 - MPMX19_05238 0.55 +0.3 767,229 + MPMX19_05238 0.55 +0.0 767,229 + MPMX19_05238 0.55 +0.4 767,229 + MPMX19_05238 0.55 +0.3 767,229 + MPMX19_05238 0.55 +0.3 767,229 + MPMX19_05238 0.55 -2.3 767,229 + MPMX19_05238 0.55 +0.7 767,229 + MPMX19_05238 0.55 -1.1 767,229 + MPMX19_05238 0.55 +0.3 767,230 - MPMX19_05238 0.55 -0.8 767,230 - MPMX19_05238 0.55 +0.3 767,230 - MPMX19_05238 0.55 -0.3 767,230 - MPMX19_05238 0.55 -1.1 767,230 - MPMX19_05238 0.55 -1.1 767,230 - MPMX19_05238 0.55 -0.6 767,230 - MPMX19_05238 0.55 +1.5 767,230 - MPMX19_05238 0.55 -0.5 767,230 - MPMX19_05238 0.55 -0.7 767,230 - MPMX19_05238 0.55 -1.3 767,230 - MPMX19_05238 0.55 -0.8 767,326 + MPMX19_05238 0.61 -1.3 767,326 + MPMX19_05238 0.61 -1.7 767,326 + MPMX19_05238 0.61 -0.8
Or see this region's nucleotide sequence