Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05068

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05067 and MPMX19_05068 are separated by 95 nucleotidesMPMX19_05068 and MPMX19_05069 are separated by 52 nucleotides MPMX19_05067: MPMX19_05067 - hypothetical protein, at 550,444 to 551,487 _05067 MPMX19_05068: MPMX19_05068 - 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA, at 551,583 to 552,326 _05068 MPMX19_05069: MPMX19_05069 - hypothetical protein, at 552,379 to 553,608 _05069 Position (kb) 551 552 553Strain fitness (log2 ratio) -2 -1 0 1 2at 550.620 kb on + strand, within MPMX19_05067at 551.103 kb on + strand, within MPMX19_05067at 551.103 kb on + strand, within MPMX19_05067at 551.104 kb on - strand, within MPMX19_05067at 551.104 kb on - strand, within MPMX19_05067at 551.594 kb on - strandat 551.677 kb on - strand, within MPMX19_05068at 551.901 kb on + strand, within MPMX19_05068at 551.901 kb on + strand, within MPMX19_05068at 551.901 kb on + strand, within MPMX19_05068at 551.901 kb on + strand, within MPMX19_05068at 551.901 kb on + strand, within MPMX19_05068at 551.901 kb on + strand, within MPMX19_05068at 551.902 kb on - strand, within MPMX19_05068at 551.902 kb on - strand, within MPMX19_05068at 551.902 kb on - strand, within MPMX19_05068at 551.902 kb on - strand, within MPMX19_05068at 551.902 kb on - strand, within MPMX19_05068at 551.902 kb on - strand, within MPMX19_05068at 551.902 kb on - strand, within MPMX19_05068at 551.902 kb on - strand, within MPMX19_05068at 551.902 kb on - strand, within MPMX19_05068at 551.902 kb on - strand, within MPMX19_05068at 552.287 kb on + strandat 552.288 kb on - strandat 552.288 kb on - strandat 552.288 kb on - strandat 552.461 kb on + strandat 552.461 kb on + strandat 552.461 kb on + strandat 552.461 kb on + strandat 552.461 kb on + strandat 552.462 kb on - strandat 552.462 kb on - strandat 552.462 kb on - strandat 552.462 kb on - strandat 552.462 kb on - strandat 552.566 kb on + strand, within MPMX19_05069at 552.566 kb on + strand, within MPMX19_05069at 552.566 kb on + strand, within MPMX19_05069at 552.566 kb on + strand, within MPMX19_05069at 552.567 kb on - strand, within MPMX19_05069at 552.567 kb on - strand, within MPMX19_05069at 552.639 kb on + strand, within MPMX19_05069at 552.830 kb on + strand, within MPMX19_05069at 552.830 kb on + strand, within MPMX19_05069at 552.830 kb on + strand, within MPMX19_05069at 552.830 kb on + strand, within MPMX19_05069at 552.831 kb on - strand, within MPMX19_05069at 552.831 kb on - strand, within MPMX19_05069at 552.831 kb on - strand, within MPMX19_05069at 552.831 kb on - strand, within MPMX19_05069at 552.831 kb on - strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.896 kb on + strand, within MPMX19_05069at 552.897 kb on - strand, within MPMX19_05069at 552.897 kb on - strand, within MPMX19_05069at 552.897 kb on - strand, within MPMX19_05069at 552.897 kb on - strand, within MPMX19_05069at 552.897 kb on - strand, within MPMX19_05069at 552.897 kb on - strand, within MPMX19_05069at 552.897 kb on - strand, within MPMX19_05069at 553.046 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.181 kb on + strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.182 kb on - strand, within MPMX19_05069at 553.190 kb on + strand, within MPMX19_05069at 553.190 kb on + strand, within MPMX19_05069at 553.190 kb on + strand, within MPMX19_05069at 553.190 kb on + strand, within MPMX19_05069at 553.190 kb on + strand, within MPMX19_05069at 553.190 kb on + strand, within MPMX19_05069at 553.190 kb on + strand, within MPMX19_05069at 553.190 kb on + strand, within MPMX19_05069at 553.190 kb on + strand, within MPMX19_05069at 553.191 kb on - strand, within MPMX19_05069at 553.191 kb on - strand, within MPMX19_05069at 553.191 kb on - strand, within MPMX19_05069at 553.191 kb on - strand, within MPMX19_05069at 553.191 kb on - strand, within MPMX19_05069at 553.191 kb on - strand, within MPMX19_05069at 553.191 kb on - strand, within MPMX19_05069at 553.191 kb on - strand, within MPMX19_05069at 553.191 kb on - strand, within MPMX19_05069at 553.217 kb on + strand, within MPMX19_05069at 553.217 kb on + strand, within MPMX19_05069at 553.217 kb on + strand, within MPMX19_05069at 553.218 kb on - strand, within MPMX19_05069at 553.218 kb on - strand, within MPMX19_05069

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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550,620 + MPMX19_05067 0.17 -0.5
551,103 + MPMX19_05067 0.63 +1.8
551,103 + MPMX19_05067 0.63 -0.2
551,104 - MPMX19_05067 0.63 -1.3
551,104 - MPMX19_05067 0.63 -0.4
551,594 - +0.5
551,677 - MPMX19_05068 0.13 -0.5
551,901 + MPMX19_05068 0.43 +0.3
551,901 + MPMX19_05068 0.43 +0.5
551,901 + MPMX19_05068 0.43 -0.3
551,901 + MPMX19_05068 0.43 -1.5
551,901 + MPMX19_05068 0.43 -0.8
551,901 + MPMX19_05068 0.43 -0.8
551,902 - MPMX19_05068 0.43 -1.2
551,902 - MPMX19_05068 0.43 +1.0
551,902 - MPMX19_05068 0.43 -0.0
551,902 - MPMX19_05068 0.43 +0.5
551,902 - MPMX19_05068 0.43 -0.5
551,902 - MPMX19_05068 0.43 +0.8
551,902 - MPMX19_05068 0.43 -0.3
551,902 - MPMX19_05068 0.43 -1.3
551,902 - MPMX19_05068 0.43 -0.0
551,902 - MPMX19_05068 0.43 -0.3
552,287 + +0.5
552,288 - -0.5
552,288 - -1.5
552,288 - -0.5
552,461 + -1.9
552,461 + +1.0
552,461 + -0.5
552,461 + -0.7
552,461 + +0.5
552,462 - -0.9
552,462 - -1.9
552,462 - -1.6
552,462 - -0.3
552,462 - -0.9
552,566 + MPMX19_05069 0.15 -0.5
552,566 + MPMX19_05069 0.15 -1.3
552,566 + MPMX19_05069 0.15 -0.3
552,566 + MPMX19_05069 0.15 +0.1
552,567 - MPMX19_05069 0.15 +1.0
552,567 - MPMX19_05069 0.15 -0.6
552,639 + MPMX19_05069 0.21 -0.4
552,830 + MPMX19_05069 0.37 -0.8
552,830 + MPMX19_05069 0.37 +0.1
552,830 + MPMX19_05069 0.37 -0.2
552,830 + MPMX19_05069 0.37 +0.5
552,831 - MPMX19_05069 0.37 +0.3
552,831 - MPMX19_05069 0.37 -0.0
552,831 - MPMX19_05069 0.37 -0.8
552,831 - MPMX19_05069 0.37 +0.3
552,831 - MPMX19_05069 0.37 -1.7
552,896 + MPMX19_05069 0.42 -1.8
552,896 + MPMX19_05069 0.42 -0.4
552,896 + MPMX19_05069 0.42 -0.2
552,896 + MPMX19_05069 0.42 +0.2
552,896 + MPMX19_05069 0.42 +0.8
552,896 + MPMX19_05069 0.42 +0.4
552,896 + MPMX19_05069 0.42 +0.1
552,896 + MPMX19_05069 0.42 -1.4
552,896 + MPMX19_05069 0.42 -0.3
552,896 + MPMX19_05069 0.42 +0.0
552,896 + MPMX19_05069 0.42 -0.7
552,897 - MPMX19_05069 0.42 -1.3
552,897 - MPMX19_05069 0.42 -1.5
552,897 - MPMX19_05069 0.42 +1.2
552,897 - MPMX19_05069 0.42 +0.5
552,897 - MPMX19_05069 0.42 -0.8
552,897 - MPMX19_05069 0.42 +0.2
552,897 - MPMX19_05069 0.42 -1.0
553,046 + MPMX19_05069 0.54 -0.2
553,181 + MPMX19_05069 0.65 -2.0
553,181 + MPMX19_05069 0.65 -0.8
553,181 + MPMX19_05069 0.65 +0.1
553,181 + MPMX19_05069 0.65 -0.3
553,181 + MPMX19_05069 0.65 +0.1
553,181 + MPMX19_05069 0.65 +0.4
553,181 + MPMX19_05069 0.65 -0.7
553,181 + MPMX19_05069 0.65 -0.5
553,181 + MPMX19_05069 0.65 +0.0
553,181 + MPMX19_05069 0.65 -0.1
553,181 + MPMX19_05069 0.65 -1.3
553,181 + MPMX19_05069 0.65 +0.7
553,181 + MPMX19_05069 0.65 -1.2
553,181 + MPMX19_05069 0.65 +0.0
553,181 + MPMX19_05069 0.65 +0.1
553,182 - MPMX19_05069 0.65 -0.3
553,182 - MPMX19_05069 0.65 -0.8
553,182 - MPMX19_05069 0.65 -1.2
553,182 - MPMX19_05069 0.65 -0.7
553,182 - MPMX19_05069 0.65 +1.2
553,182 - MPMX19_05069 0.65 -1.6
553,182 - MPMX19_05069 0.65 +0.3
553,182 - MPMX19_05069 0.65 -0.0
553,182 - MPMX19_05069 0.65 +1.1
553,182 - MPMX19_05069 0.65 -0.6
553,182 - MPMX19_05069 0.65 -0.8
553,182 - MPMX19_05069 0.65 -1.5
553,182 - MPMX19_05069 0.65 +0.1
553,182 - MPMX19_05069 0.65 -1.3
553,182 - MPMX19_05069 0.65 -0.8
553,182 - MPMX19_05069 0.65 -0.2
553,182 - MPMX19_05069 0.65 -1.3
553,182 - MPMX19_05069 0.65 -0.0
553,182 - MPMX19_05069 0.65 -0.4
553,190 + MPMX19_05069 0.66 -1.7
553,190 + MPMX19_05069 0.66 -0.8
553,190 + MPMX19_05069 0.66 +0.2
553,190 + MPMX19_05069 0.66 +0.4
553,190 + MPMX19_05069 0.66 -0.5
553,190 + MPMX19_05069 0.66 -0.5
553,190 + MPMX19_05069 0.66 -0.0
553,190 + MPMX19_05069 0.66 +0.1
553,190 + MPMX19_05069 0.66 -0.1
553,191 - MPMX19_05069 0.66 +0.5
553,191 - MPMX19_05069 0.66 +0.8
553,191 - MPMX19_05069 0.66 -0.4
553,191 - MPMX19_05069 0.66 -1.9
553,191 - MPMX19_05069 0.66 -0.0
553,191 - MPMX19_05069 0.66 -0.0
553,191 - MPMX19_05069 0.66 -2.0
553,191 - MPMX19_05069 0.66 -0.7
553,191 - MPMX19_05069 0.66 +0.8
553,217 + MPMX19_05069 0.68 -2.2
553,217 + MPMX19_05069 0.68 -0.1
553,217 + MPMX19_05069 0.68 -0.5
553,218 - MPMX19_05069 0.68 -0.3
553,218 - MPMX19_05069 0.68 +0.7

Or see this region's nucleotide sequence