Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04936 and MPMX19_04937 are separated by 51 nucleotides MPMX19_04937 and MPMX19_04938 overlap by 4 nucleotides MPMX19_04938 and MPMX19_04939 are separated by 96 nucleotides
MPMX19_04936: MPMX19_04936 - Urocanate hydratase, at 398,132 to 399,814
_04936
MPMX19_04937: MPMX19_04937 - Mannosyl-D-glycerate transport/metabolism system repressor MngR, at 399,866 to 400,594
_04937
MPMX19_04938: MPMX19_04938 - Imidazolonepropionase, at 400,591 to 401,844
_04938
MPMX19_04939: MPMX19_04939 - 8-oxoguanine deaminase, at 401,941 to 403,305
_04939
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 399.663 kb on + strand at 399.664 kb on - strand at 399.664 kb on - strand at 400.086 kb on + strand, within MPMX19_04937 at 400.086 kb on + strand, within MPMX19_04937 at 400.086 kb on + strand, within MPMX19_04937 at 400.086 kb on + strand, within MPMX19_04937 at 400.087 kb on - strand, within MPMX19_04937 at 400.087 kb on - strand, within MPMX19_04937 at 400.125 kb on + strand, within MPMX19_04937 at 400.125 kb on + strand, within MPMX19_04937 at 400.125 kb on + strand, within MPMX19_04937 at 400.126 kb on - strand, within MPMX19_04937 at 400.431 kb on - strand, within MPMX19_04937 at 400.431 kb on - strand, within MPMX19_04937 at 400.561 kb on - strand at 400.561 kb on - strand at 400.667 kb on - strand at 400.673 kb on + strand at 400.673 kb on + strand at 400.673 kb on + strand at 400.674 kb on - strand at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.959 kb on - strand, within MPMX19_04938 at 400.959 kb on - strand, within MPMX19_04938 at 401.264 kb on + strand, within MPMX19_04938 at 401.265 kb on - strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.603 kb on + strand, within MPMX19_04938 at 401.604 kb on - strand, within MPMX19_04938 at 401.604 kb on - strand, within MPMX19_04938 at 401.604 kb on - strand, within MPMX19_04938 at 401.861 kb on + strand at 401.861 kb on + strand at 401.862 kb on - strand at 401.862 kb on - strand at 401.862 kb on - strand at 401.901 kb on - strand at 401.902 kb on + strand at 402.199 kb on + strand, within MPMX19_04939 at 402.199 kb on + strand, within MPMX19_04939 at 402.199 kb on + strand, within MPMX19_04939 at 402.199 kb on + strand, within MPMX19_04939 at 402.199 kb on + strand, within MPMX19_04939 at 402.199 kb on + strand, within MPMX19_04939 at 402.200 kb on - strand, within MPMX19_04939 at 402.200 kb on - strand, within MPMX19_04939 at 402.200 kb on - strand, within MPMX19_04939 at 402.256 kb on + strand, within MPMX19_04939 at 402.256 kb on + strand, within MPMX19_04939 at 402.256 kb on + strand, within MPMX19_04939 at 402.256 kb on + strand, within MPMX19_04939 at 402.256 kb on + strand, within MPMX19_04939 at 402.256 kb on + strand, within MPMX19_04939 at 402.256 kb on + strand, within MPMX19_04939 at 402.256 kb on + strand, within MPMX19_04939 at 402.256 kb on - strand, within MPMX19_04939 at 402.257 kb on - strand, within MPMX19_04939 at 402.257 kb on - strand, within MPMX19_04939 at 402.257 kb on - strand, within MPMX19_04939 at 402.257 kb on - strand, within MPMX19_04939 at 402.257 kb on - strand, within MPMX19_04939 at 402.257 kb on - strand, within MPMX19_04939 at 402.257 kb on - strand, within MPMX19_04939 at 402.300 kb on - strand, within MPMX19_04939 at 402.304 kb on + strand, within MPMX19_04939 at 402.305 kb on - strand, within MPMX19_04939 at 402.305 kb on - strand, within MPMX19_04939 at 402.305 kb on - strand, within MPMX19_04939 at 402.305 kb on - strand, within MPMX19_04939 at 402.305 kb on - strand, within MPMX19_04939 at 402.335 kb on - strand, within MPMX19_04939 at 402.335 kb on - strand, within MPMX19_04939 at 402.335 kb on - strand, within MPMX19_04939 at 402.418 kb on + strand, within MPMX19_04939 at 402.418 kb on + strand, within MPMX19_04939 at 402.418 kb on + strand, within MPMX19_04939 at 402.418 kb on + strand, within MPMX19_04939 at 402.418 kb on + strand, within MPMX19_04939 at 402.418 kb on + strand, within MPMX19_04939 at 402.419 kb on - strand, within MPMX19_04939 at 402.419 kb on - strand, within MPMX19_04939 at 402.419 kb on - strand, within MPMX19_04939 at 402.419 kb on - strand, within MPMX19_04939 at 402.419 kb on - strand, within MPMX19_04939 at 402.419 kb on - strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.519 kb on + strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.520 kb on - strand, within MPMX19_04939 at 402.523 kb on + strand, within MPMX19_04939 at 402.523 kb on + strand, within MPMX19_04939 at 402.523 kb on + strand, within MPMX19_04939 at 402.523 kb on + strand, within MPMX19_04939 at 402.523 kb on + strand, within MPMX19_04939 at 402.523 kb on + strand, within MPMX19_04939 at 402.523 kb on + strand, within MPMX19_04939 at 402.523 kb on + strand, within MPMX19_04939 at 402.524 kb on - strand, within MPMX19_04939 at 402.524 kb on - strand, within MPMX19_04939 at 402.524 kb on - strand, within MPMX19_04939 at 402.524 kb on - strand, within MPMX19_04939 at 402.524 kb on - strand, within MPMX19_04939 at 402.524 kb on - strand, within MPMX19_04939 at 402.524 kb on - strand, within MPMX19_04939 at 402.524 kb on - strand, within MPMX19_04939 at 402.524 kb on - strand, within MPMX19_04939 at 402.524 kb on - strand, within MPMX19_04939 at 402.679 kb on + strand, within MPMX19_04939
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 399,663 + -1.0 399,664 - +0.8 399,664 - -0.4 400,086 + MPMX19_04937 0.30 -0.5 400,086 + MPMX19_04937 0.30 -0.2 400,086 + MPMX19_04937 0.30 -2.5 400,086 + MPMX19_04937 0.30 -1.0 400,087 - MPMX19_04937 0.30 +0.1 400,087 - MPMX19_04937 0.30 -0.5 400,125 + MPMX19_04937 0.36 -1.1 400,125 + MPMX19_04937 0.36 +0.4 400,125 + MPMX19_04937 0.36 -0.6 400,126 - MPMX19_04937 0.36 +0.4 400,431 - MPMX19_04937 0.78 +0.4 400,431 - MPMX19_04937 0.78 -1.1 400,561 - -0.3 400,561 - +0.6 400,667 - +0.3 400,673 + -1.2 400,673 + +0.0 400,673 + +0.7 400,674 - +0.4 400,958 + MPMX19_04938 0.29 -0.2 400,958 + MPMX19_04938 0.29 -0.4 400,958 + MPMX19_04938 0.29 +0.2 400,958 + MPMX19_04938 0.29 -0.4 400,958 + MPMX19_04938 0.29 -0.2 400,958 + MPMX19_04938 0.29 -0.2 400,958 + MPMX19_04938 0.29 -1.3 400,958 + MPMX19_04938 0.29 +1.1 400,958 + MPMX19_04938 0.29 -0.5 400,959 - MPMX19_04938 0.29 -1.6 400,959 - MPMX19_04938 0.29 +0.5 401,264 + MPMX19_04938 0.54 -1.4 401,265 - MPMX19_04938 0.54 -0.4 401,315 + MPMX19_04938 0.58 -0.4 401,315 + MPMX19_04938 0.58 -0.4 401,315 + MPMX19_04938 0.58 -1.7 401,315 + MPMX19_04938 0.58 -0.2 401,315 + MPMX19_04938 0.58 +0.6 401,315 + MPMX19_04938 0.58 -0.1 401,315 + MPMX19_04938 0.58 +0.4 401,315 + MPMX19_04938 0.58 -0.4 401,315 + MPMX19_04938 0.58 -1.6 401,315 + MPMX19_04938 0.58 +0.6 401,315 + MPMX19_04938 0.58 -0.8 401,316 - MPMX19_04938 0.58 -1.3 401,316 - MPMX19_04938 0.58 -0.5 401,316 - MPMX19_04938 0.58 -0.1 401,316 - MPMX19_04938 0.58 -1.6 401,316 - MPMX19_04938 0.58 -1.6 401,316 - MPMX19_04938 0.58 +1.3 401,316 - MPMX19_04938 0.58 +0.6 401,316 - MPMX19_04938 0.58 -2.1 401,316 - MPMX19_04938 0.58 +0.3 401,316 - MPMX19_04938 0.58 +1.0 401,316 - MPMX19_04938 0.58 -0.9 401,316 - MPMX19_04938 0.58 -2.0 401,552 + MPMX19_04938 0.77 -0.9 401,552 + MPMX19_04938 0.77 -2.5 401,552 + MPMX19_04938 0.77 -1.2 401,552 + MPMX19_04938 0.77 -1.0 401,552 + MPMX19_04938 0.77 -0.7 401,552 + MPMX19_04938 0.77 -1.9 401,552 + MPMX19_04938 0.77 -1.0 401,552 + MPMX19_04938 0.77 -0.2 401,552 + MPMX19_04938 0.77 -0.7 401,552 + MPMX19_04938 0.77 -1.2 401,552 + MPMX19_04938 0.77 +0.2 401,552 + MPMX19_04938 0.77 -0.2 401,552 + MPMX19_04938 0.77 +0.6 401,552 + MPMX19_04938 0.77 -0.1 401,552 + MPMX19_04938 0.77 -2.3 401,553 - MPMX19_04938 0.77 -0.3 401,553 - MPMX19_04938 0.77 -0.0 401,553 - MPMX19_04938 0.77 -0.8 401,553 - MPMX19_04938 0.77 -0.2 401,553 - MPMX19_04938 0.77 -2.5 401,553 - MPMX19_04938 0.77 +0.2 401,553 - MPMX19_04938 0.77 -1.5 401,553 - MPMX19_04938 0.77 +0.1 401,553 - MPMX19_04938 0.77 +0.4 401,553 - MPMX19_04938 0.77 -1.6 401,553 - MPMX19_04938 0.77 +0.3 401,553 - MPMX19_04938 0.77 -1.5 401,603 + MPMX19_04938 0.81 -1.2 401,604 - MPMX19_04938 0.81 -1.6 401,604 - MPMX19_04938 0.81 -0.8 401,604 - MPMX19_04938 0.81 -1.2 401,861 + -0.4 401,861 + +0.3 401,862 - -0.7 401,862 - -1.5 401,862 - -2.2 401,901 - +0.0 401,902 + -0.7 402,199 + MPMX19_04939 0.19 +0.2 402,199 + MPMX19_04939 0.19 -1.1 402,199 + MPMX19_04939 0.19 +0.2 402,199 + MPMX19_04939 0.19 +0.3 402,199 + MPMX19_04939 0.19 -0.9 402,199 + MPMX19_04939 0.19 -0.4 402,200 - MPMX19_04939 0.19 -0.4 402,200 - MPMX19_04939 0.19 -0.5 402,200 - MPMX19_04939 0.19 -0.5 402,256 + MPMX19_04939 0.23 +0.0 402,256 + MPMX19_04939 0.23 +0.0 402,256 + MPMX19_04939 0.23 -0.1 402,256 + MPMX19_04939 0.23 +0.1 402,256 + MPMX19_04939 0.23 -0.3 402,256 + MPMX19_04939 0.23 -0.8 402,256 + MPMX19_04939 0.23 -2.3 402,256 + MPMX19_04939 0.23 -1.4 402,256 - MPMX19_04939 0.23 -0.3 402,257 - MPMX19_04939 0.23 +0.2 402,257 - MPMX19_04939 0.23 +0.3 402,257 - MPMX19_04939 0.23 -1.6 402,257 - MPMX19_04939 0.23 +0.2 402,257 - MPMX19_04939 0.23 +0.0 402,257 - MPMX19_04939 0.23 -0.1 402,257 - MPMX19_04939 0.23 +0.1 402,300 - MPMX19_04939 0.26 -0.6 402,304 + MPMX19_04939 0.27 -1.0 402,305 - MPMX19_04939 0.27 -1.1 402,305 - MPMX19_04939 0.27 -0.1 402,305 - MPMX19_04939 0.27 -1.0 402,305 - MPMX19_04939 0.27 -0.2 402,305 - MPMX19_04939 0.27 -0.5 402,335 - MPMX19_04939 0.29 -0.6 402,335 - MPMX19_04939 0.29 -0.6 402,335 - MPMX19_04939 0.29 -0.6 402,418 + MPMX19_04939 0.35 -0.6 402,418 + MPMX19_04939 0.35 +0.3 402,418 + MPMX19_04939 0.35 -0.7 402,418 + MPMX19_04939 0.35 +0.9 402,418 + MPMX19_04939 0.35 -1.2 402,418 + MPMX19_04939 0.35 -0.1 402,419 - MPMX19_04939 0.35 -0.6 402,419 - MPMX19_04939 0.35 +0.4 402,419 - MPMX19_04939 0.35 -0.2 402,419 - MPMX19_04939 0.35 -1.0 402,419 - MPMX19_04939 0.35 +0.4 402,419 - MPMX19_04939 0.35 -1.1 402,519 + MPMX19_04939 0.42 -1.6 402,519 + MPMX19_04939 0.42 -0.4 402,519 + MPMX19_04939 0.42 -0.6 402,519 + MPMX19_04939 0.42 -1.7 402,519 + MPMX19_04939 0.42 -1.5 402,519 + MPMX19_04939 0.42 +0.7 402,519 + MPMX19_04939 0.42 -0.7 402,519 + MPMX19_04939 0.42 +0.0 402,519 + MPMX19_04939 0.42 -0.5 402,519 + MPMX19_04939 0.42 +0.0 402,519 + MPMX19_04939 0.42 -0.0 402,519 + MPMX19_04939 0.42 -1.0 402,519 + MPMX19_04939 0.42 +0.6 402,520 - MPMX19_04939 0.42 +0.5 402,520 - MPMX19_04939 0.42 +0.4 402,520 - MPMX19_04939 0.42 -1.0 402,520 - MPMX19_04939 0.42 -1.6 402,520 - MPMX19_04939 0.42 -2.1 402,520 - MPMX19_04939 0.42 -1.0 402,520 - MPMX19_04939 0.42 +0.3 402,520 - MPMX19_04939 0.42 -0.1 402,520 - MPMX19_04939 0.42 +1.8 402,520 - MPMX19_04939 0.42 +0.0 402,520 - MPMX19_04939 0.42 -1.2 402,520 - MPMX19_04939 0.42 -1.1 402,520 - MPMX19_04939 0.42 -1.1 402,523 + MPMX19_04939 0.43 +0.1 402,523 + MPMX19_04939 0.43 -0.9 402,523 + MPMX19_04939 0.43 -0.6 402,523 + MPMX19_04939 0.43 -1.7 402,523 + MPMX19_04939 0.43 +0.7 402,523 + MPMX19_04939 0.43 -1.7 402,523 + MPMX19_04939 0.43 -0.5 402,523 + MPMX19_04939 0.43 +0.0 402,524 - MPMX19_04939 0.43 -0.1 402,524 - MPMX19_04939 0.43 +2.2 402,524 - MPMX19_04939 0.43 -0.7 402,524 - MPMX19_04939 0.43 -1.4 402,524 - MPMX19_04939 0.43 +0.3 402,524 - MPMX19_04939 0.43 -0.8 402,524 - MPMX19_04939 0.43 -1.5 402,524 - MPMX19_04939 0.43 -0.3 402,524 - MPMX19_04939 0.43 -0.6 402,524 - MPMX19_04939 0.43 +0.3 402,679 + MPMX19_04939 0.54 -1.4
Or see this region's nucleotide sequence