Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04889 and MPMX19_04890 are separated by 132 nucleotides MPMX19_04890 and MPMX19_04891 are separated by 66 nucleotides MPMX19_04891 and MPMX19_04892 are separated by 209 nucleotides
MPMX19_04889: MPMX19_04889 - Chromosome partition protein Smc, at 336,522 to 339,983
_04889
MPMX19_04890: MPMX19_04890 - hypothetical protein, at 340,116 to 340,778
_04890
MPMX19_04891: MPMX19_04891 - hypothetical protein, at 340,845 to 341,318
_04891
MPMX19_04892: MPMX19_04892 - Adenine DNA glycosylase, at 341,528 to 342,586
_04892
Position (kb) 340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 340.003 kb on + strand at 340.003 kb on + strand at 340.003 kb on + strand at 340.004 kb on - strand at 340.004 kb on - strand at 340.104 kb on + strand at 340.104 kb on + strand at 340.104 kb on + strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.200 kb on - strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.409 kb on - strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.412 kb on - strand, within MPMX19_04890 at 340.412 kb on - strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.583 kb on - strand, within MPMX19_04890 at 340.750 kb on + strand at 340.751 kb on - strand at 340.793 kb on + strand at 340.794 kb on - strand at 340.794 kb on - strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.810 kb on + strand at 340.810 kb on + strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 341.389 kb on + strand at 341.389 kb on + strand at 341.390 kb on - strand at 341.514 kb on + strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.573 kb on + strand at 341.634 kb on - strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.787 kb on - strand, within MPMX19_04892 at 341.787 kb on - strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.156 kb on - strand, within MPMX19_04892 at 342.156 kb on - strand, within MPMX19_04892 at 342.242 kb on + strand, within MPMX19_04892 at 342.242 kb on + strand, within MPMX19_04892 at 342.243 kb on - strand, within MPMX19_04892
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 340,003 + -2.1 340,003 + -0.8 340,003 + +0.6 340,004 - -0.9 340,004 - -0.0 340,104 + -0.6 340,104 + +0.2 340,104 + -1.9 340,105 - -1.0 340,105 - -1.1 340,105 - -0.3 340,105 - -1.3 340,105 - -0.3 340,105 - -0.1 340,117 + -3.0 340,117 + -0.0 340,117 + -1.8 340,117 + -0.1 340,117 + +0.0 340,117 + -1.8 340,117 + -1.3 340,118 - -0.4 340,118 - +0.4 340,118 - -0.6 340,118 - -0.6 340,118 - -1.0 340,118 - +0.1 340,118 - +0.3 340,118 - +0.1 340,118 - +0.8 340,118 - -0.8 340,118 - +0.2 340,118 - +0.7 340,118 - +0.3 340,118 - -0.5 340,118 - +0.4 340,118 - +0.6 340,200 - MPMX19_04890 0.13 -2.0 340,225 + MPMX19_04890 0.16 -0.8 340,225 + MPMX19_04890 0.16 -1.4 340,225 + MPMX19_04890 0.16 -0.0 340,225 + MPMX19_04890 0.16 -1.4 340,226 - MPMX19_04890 0.17 -0.7 340,226 - MPMX19_04890 0.17 +0.6 340,226 - MPMX19_04890 0.17 -0.8 340,226 - MPMX19_04890 0.17 -1.3 340,226 - MPMX19_04890 0.17 -0.0 340,226 - MPMX19_04890 0.17 -1.5 340,409 - MPMX19_04890 0.44 -1.3 340,411 + MPMX19_04890 0.44 +0.2 340,411 + MPMX19_04890 0.44 -1.4 340,411 + MPMX19_04890 0.44 -0.8 340,412 - MPMX19_04890 0.45 -0.3 340,412 - MPMX19_04890 0.45 -0.2 340,513 + MPMX19_04890 0.60 +0.2 340,513 + MPMX19_04890 0.60 +0.6 340,513 + MPMX19_04890 0.60 -0.0 340,514 - MPMX19_04890 0.60 -0.1 340,514 - MPMX19_04890 0.60 -0.4 340,514 - MPMX19_04890 0.60 -0.8 340,514 - MPMX19_04890 0.60 -1.0 340,514 - MPMX19_04890 0.60 +0.1 340,514 - MPMX19_04890 0.60 -0.2 340,583 - MPMX19_04890 0.70 +0.6 340,750 + -1.3 340,751 - +1.1 340,793 + +0.2 340,794 - +0.2 340,794 - +2.3 340,808 + +0.3 340,808 + -0.1 340,808 + -1.9 340,808 + -0.3 340,808 + +1.3 340,808 + -1.4 340,808 + +0.7 340,808 + -1.8 340,808 + -0.0 340,808 + +0.6 340,808 + -0.0 340,808 + +0.3 340,809 - +0.6 340,809 - -2.4 340,809 - +1.1 340,809 - -0.3 340,809 - +0.3 340,809 - -1.4 340,809 - -0.3 340,809 - +0.4 340,809 - -2.2 340,809 - -1.3 340,809 - +0.2 340,809 - +1.1 340,809 - -0.3 340,809 - +0.5 340,810 + -0.0 340,810 + +0.2 340,811 - +0.1 340,811 - -0.4 340,811 - -2.4 340,811 - -0.7 340,811 - -0.7 340,811 - -1.6 340,811 - -0.3 340,811 - +1.2 340,811 - -1.3 340,811 - +1.2 340,822 + +0.3 340,822 + +0.2 340,822 + -0.8 340,822 + -0.2 340,822 + +1.1 340,823 - -0.4 340,823 - -0.1 340,823 - -0.3 340,823 - -1.4 340,823 - -0.8 341,389 + -2.1 341,389 + +0.3 341,390 - -1.0 341,514 + +1.3 341,515 - -0.3 341,515 - +0.6 341,515 - -0.6 341,515 - -0.6 341,515 - -0.6 341,515 - -0.0 341,515 - -0.8 341,515 - +0.3 341,515 - -0.8 341,515 - -1.1 341,573 + +0.4 341,634 - MPMX19_04892 0.10 -0.6 341,693 + MPMX19_04892 0.16 -0.2 341,693 + MPMX19_04892 0.16 -0.9 341,693 + MPMX19_04892 0.16 -0.6 341,693 + MPMX19_04892 0.16 -0.3 341,694 - MPMX19_04892 0.16 +0.1 341,694 - MPMX19_04892 0.16 +0.4 341,694 - MPMX19_04892 0.16 +0.2 341,694 - MPMX19_04892 0.16 -1.0 341,694 - MPMX19_04892 0.16 -0.6 341,694 - MPMX19_04892 0.16 +0.7 341,694 - MPMX19_04892 0.16 +0.7 341,787 - MPMX19_04892 0.24 -1.6 341,787 - MPMX19_04892 0.24 +0.4 341,789 + MPMX19_04892 0.25 -0.8 341,789 + MPMX19_04892 0.25 -0.7 341,789 + MPMX19_04892 0.25 +0.7 341,789 + MPMX19_04892 0.25 -1.9 341,789 + MPMX19_04892 0.25 +1.0 341,790 - MPMX19_04892 0.25 +2.1 341,790 - MPMX19_04892 0.25 -1.4 341,790 - MPMX19_04892 0.25 -0.0 341,900 + MPMX19_04892 0.35 -1.8 341,900 + MPMX19_04892 0.35 -0.3 341,900 + MPMX19_04892 0.35 -1.3 341,900 + MPMX19_04892 0.35 -2.1 341,900 + MPMX19_04892 0.35 +0.2 341,901 - MPMX19_04892 0.35 -0.0 341,901 - MPMX19_04892 0.35 +0.3 341,901 - MPMX19_04892 0.35 -1.6 341,901 - MPMX19_04892 0.35 +1.8 342,027 + MPMX19_04892 0.47 -0.2 342,027 + MPMX19_04892 0.47 +0.1 342,027 + MPMX19_04892 0.47 -0.2 342,027 + MPMX19_04892 0.47 +0.2 342,027 + MPMX19_04892 0.47 -0.4 342,028 - MPMX19_04892 0.47 -2.0 342,028 - MPMX19_04892 0.47 -0.7 342,028 - MPMX19_04892 0.47 -1.3 342,074 + MPMX19_04892 0.52 +1.6 342,074 + MPMX19_04892 0.52 -0.6 342,074 + MPMX19_04892 0.52 -0.2 342,074 + MPMX19_04892 0.52 -0.1 342,074 + MPMX19_04892 0.52 +1.9 342,074 + MPMX19_04892 0.52 -0.3 342,074 + MPMX19_04892 0.52 -0.8 342,074 + MPMX19_04892 0.52 -0.7 342,075 - MPMX19_04892 0.52 +0.6 342,075 - MPMX19_04892 0.52 +1.8 342,075 - MPMX19_04892 0.52 -1.4 342,075 - MPMX19_04892 0.52 +0.6 342,155 + MPMX19_04892 0.59 +0.6 342,155 + MPMX19_04892 0.59 -0.9 342,155 + MPMX19_04892 0.59 -0.4 342,156 - MPMX19_04892 0.59 -0.4 342,156 - MPMX19_04892 0.59 -0.7 342,242 + MPMX19_04892 0.67 +0.6 342,242 + MPMX19_04892 0.67 +0.7 342,243 - MPMX19_04892 0.68 -1.3
Or see this region's nucleotide sequence