Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04572 and MPMX19_04573 are separated by 12 nucleotides MPMX19_04573 and MPMX19_04574 are separated by 23 nucleotides MPMX19_04574 and MPMX19_04575 are separated by 153 nucleotides
MPMX19_04572: MPMX19_04572 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 950,357 to 951,010
_04572
MPMX19_04573: MPMX19_04573 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 951,023 to 951,814
_04573
MPMX19_04574: MPMX19_04574 - hypothetical protein, at 951,838 to 953,844
_04574
MPMX19_04575: MPMX19_04575 - Cystathionine gamma-synthase, at 953,998 to 955,122
_04575
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 951.287 kb on + strand, within MPMX19_04573 at 951.287 kb on + strand, within MPMX19_04573 at 951.287 kb on + strand, within MPMX19_04573 at 951.287 kb on + strand, within MPMX19_04573 at 951.288 kb on - strand, within MPMX19_04573 at 951.288 kb on - strand, within MPMX19_04573 at 951.288 kb on - strand, within MPMX19_04573 at 951.288 kb on - strand, within MPMX19_04573 at 951.288 kb on - strand, within MPMX19_04573 at 951.329 kb on + strand, within MPMX19_04573 at 951.329 kb on + strand, within MPMX19_04573 at 951.329 kb on + strand, within MPMX19_04573 at 951.330 kb on - strand, within MPMX19_04573 at 951.330 kb on - strand, within MPMX19_04573 at 951.333 kb on - strand, within MPMX19_04573 at 951.333 kb on - strand, within MPMX19_04573 at 951.333 kb on - strand, within MPMX19_04573 at 951.333 kb on - strand, within MPMX19_04573 at 951.431 kb on + strand, within MPMX19_04573 at 951.431 kb on + strand, within MPMX19_04573 at 951.431 kb on + strand, within MPMX19_04573 at 951.431 kb on + strand, within MPMX19_04573 at 951.432 kb on - strand, within MPMX19_04573 at 951.432 kb on - strand, within MPMX19_04573 at 951.432 kb on - strand, within MPMX19_04573 at 951.432 kb on - strand, within MPMX19_04573 at 951.432 kb on - strand, within MPMX19_04573 at 951.489 kb on - strand, within MPMX19_04573 at 951.489 kb on - strand, within MPMX19_04573 at 951.489 kb on - strand, within MPMX19_04573 at 951.560 kb on + strand, within MPMX19_04573 at 951.560 kb on + strand, within MPMX19_04573 at 951.560 kb on + strand, within MPMX19_04573 at 951.560 kb on + strand, within MPMX19_04573 at 951.561 kb on - strand, within MPMX19_04573 at 951.561 kb on - strand, within MPMX19_04573 at 951.561 kb on - strand, within MPMX19_04573 at 951.561 kb on - strand, within MPMX19_04573 at 951.561 kb on - strand, within MPMX19_04573 at 951.561 kb on - strand, within MPMX19_04573 at 951.561 kb on - strand, within MPMX19_04573 at 951.588 kb on - strand, within MPMX19_04573 at 951.647 kb on + strand, within MPMX19_04573 at 951.647 kb on + strand, within MPMX19_04573 at 951.648 kb on - strand, within MPMX19_04573 at 951.761 kb on + strand at 951.761 kb on + strand at 951.761 kb on + strand at 951.761 kb on + strand at 951.762 kb on - strand at 951.762 kb on - strand at 951.762 kb on - strand at 951.762 kb on - strand at 951.762 kb on - strand at 951.762 kb on - strand at 951.762 kb on - strand at 952.294 kb on + strand, within MPMX19_04574 at 952.294 kb on + strand, within MPMX19_04574 at 952.294 kb on + strand, within MPMX19_04574 at 952.295 kb on - strand, within MPMX19_04574 at 952.295 kb on - strand, within MPMX19_04574 at 952.295 kb on - strand, within MPMX19_04574 at 952.295 kb on - strand, within MPMX19_04574 at 952.295 kb on - strand, within MPMX19_04574 at 952.327 kb on + strand, within MPMX19_04574 at 952.327 kb on + strand, within MPMX19_04574 at 952.327 kb on + strand, within MPMX19_04574 at 952.327 kb on + strand, within MPMX19_04574 at 952.327 kb on + strand, within MPMX19_04574 at 952.328 kb on - strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.330 kb on + strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.331 kb on - strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.333 kb on + strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.334 kb on - strand, within MPMX19_04574 at 952.738 kb on + strand, within MPMX19_04574 at 952.738 kb on + strand, within MPMX19_04574 at 952.739 kb on - strand, within MPMX19_04574 at 952.739 kb on - strand, within MPMX19_04574 at 952.924 kb on + strand, within MPMX19_04574 at 952.925 kb on - strand, within MPMX19_04574 at 952.925 kb on - strand, within MPMX19_04574 at 953.035 kb on + strand, within MPMX19_04574 at 953.036 kb on - strand, within MPMX19_04574 at 953.075 kb on - strand, within MPMX19_04574 at 953.075 kb on - strand, within MPMX19_04574 at 953.774 kb on - strand at 953.813 kb on - strand at 953.813 kb on - strand at 953.813 kb on - strand at 953.813 kb on - strand at 953.813 kb on - strand at 953.813 kb on - strand at 953.813 kb on - strand at 953.813 kb on - strand at 953.877 kb on - strand at 953.900 kb on - strand at 954.085 kb on + strand at 954.085 kb on + strand at 954.085 kb on + strand at 954.085 kb on + strand at 954.085 kb on + strand at 954.085 kb on + strand at 954.085 kb on + strand at 954.085 kb on + strand at 954.085 kb on + strand at 954.086 kb on - strand at 954.086 kb on - strand at 954.086 kb on - strand at 954.127 kb on + strand, within MPMX19_04575 at 954.127 kb on + strand, within MPMX19_04575 at 954.128 kb on - strand, within MPMX19_04575 at 954.128 kb on - strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.286 kb on + strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.287 kb on - strand, within MPMX19_04575 at 954.326 kb on - strand, within MPMX19_04575 at 954.580 kb on + strand, within MPMX19_04575 at 954.580 kb on + strand, within MPMX19_04575 at 954.581 kb on - strand, within MPMX19_04575 at 954.581 kb on - strand, within MPMX19_04575 at 954.818 kb on - strand, within MPMX19_04575 at 954.818 kb on - strand, within MPMX19_04575
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 951,287 + MPMX19_04573 0.33 +0.3 951,287 + MPMX19_04573 0.33 +1.5 951,287 + MPMX19_04573 0.33 -0.6 951,287 + MPMX19_04573 0.33 -0.4 951,288 - MPMX19_04573 0.33 -0.4 951,288 - MPMX19_04573 0.33 +0.8 951,288 - MPMX19_04573 0.33 +0.1 951,288 - MPMX19_04573 0.33 -1.1 951,288 - MPMX19_04573 0.33 +0.3 951,329 + MPMX19_04573 0.39 -0.3 951,329 + MPMX19_04573 0.39 -0.3 951,329 + MPMX19_04573 0.39 +1.3 951,330 - MPMX19_04573 0.39 -1.3 951,330 - MPMX19_04573 0.39 -0.1 951,333 - MPMX19_04573 0.39 -1.6 951,333 - MPMX19_04573 0.39 +1.3 951,333 - MPMX19_04573 0.39 +1.5 951,333 - MPMX19_04573 0.39 -0.5 951,431 + MPMX19_04573 0.52 +0.9 951,431 + MPMX19_04573 0.52 -0.4 951,431 + MPMX19_04573 0.52 +0.5 951,431 + MPMX19_04573 0.52 -2.0 951,432 - MPMX19_04573 0.52 -0.8 951,432 - MPMX19_04573 0.52 -0.9 951,432 - MPMX19_04573 0.52 +0.4 951,432 - MPMX19_04573 0.52 -0.9 951,432 - MPMX19_04573 0.52 -1.1 951,489 - MPMX19_04573 0.59 -1.5 951,489 - MPMX19_04573 0.59 -0.2 951,489 - MPMX19_04573 0.59 -0.9 951,560 + MPMX19_04573 0.68 +0.1 951,560 + MPMX19_04573 0.68 +0.3 951,560 + MPMX19_04573 0.68 +0.8 951,560 + MPMX19_04573 0.68 +0.6 951,561 - MPMX19_04573 0.68 +0.7 951,561 - MPMX19_04573 0.68 +1.7 951,561 - MPMX19_04573 0.68 +1.9 951,561 - MPMX19_04573 0.68 +2.3 951,561 - MPMX19_04573 0.68 -0.3 951,561 - MPMX19_04573 0.68 -0.2 951,561 - MPMX19_04573 0.68 -0.8 951,588 - MPMX19_04573 0.71 -1.9 951,647 + MPMX19_04573 0.79 -0.4 951,647 + MPMX19_04573 0.79 -0.1 951,648 - MPMX19_04573 0.79 +0.3 951,761 + -1.4 951,761 + +0.9 951,761 + -0.6 951,761 + -0.4 951,762 - -2.1 951,762 - -0.5 951,762 - -0.6 951,762 - +0.7 951,762 - -0.3 951,762 - +0.9 951,762 - -1.7 952,294 + MPMX19_04574 0.23 -0.5 952,294 + MPMX19_04574 0.23 -1.5 952,294 + MPMX19_04574 0.23 -0.6 952,295 - MPMX19_04574 0.23 -1.0 952,295 - MPMX19_04574 0.23 +0.5 952,295 - MPMX19_04574 0.23 +1.1 952,295 - MPMX19_04574 0.23 +0.7 952,295 - MPMX19_04574 0.23 +0.5 952,327 + MPMX19_04574 0.24 +1.2 952,327 + MPMX19_04574 0.24 -0.6 952,327 + MPMX19_04574 0.24 -0.3 952,327 + MPMX19_04574 0.24 +1.3 952,327 + MPMX19_04574 0.24 +0.1 952,328 - MPMX19_04574 0.24 +0.3 952,330 + MPMX19_04574 0.25 -0.3 952,330 + MPMX19_04574 0.25 +0.7 952,330 + MPMX19_04574 0.25 +0.9 952,330 + MPMX19_04574 0.25 +0.1 952,330 + MPMX19_04574 0.25 -0.2 952,330 + MPMX19_04574 0.25 +0.1 952,330 + MPMX19_04574 0.25 -0.9 952,330 + MPMX19_04574 0.25 -1.1 952,330 + MPMX19_04574 0.25 -0.9 952,330 + MPMX19_04574 0.25 +0.4 952,330 + MPMX19_04574 0.25 -1.9 952,330 + MPMX19_04574 0.25 +0.4 952,331 - MPMX19_04574 0.25 +0.0 952,331 - MPMX19_04574 0.25 -0.2 952,331 - MPMX19_04574 0.25 -0.5 952,331 - MPMX19_04574 0.25 -0.8 952,331 - MPMX19_04574 0.25 +0.3 952,331 - MPMX19_04574 0.25 +0.4 952,331 - MPMX19_04574 0.25 +0.8 952,331 - MPMX19_04574 0.25 -0.2 952,331 - MPMX19_04574 0.25 +0.7 952,331 - MPMX19_04574 0.25 -1.8 952,331 - MPMX19_04574 0.25 +1.0 952,331 - MPMX19_04574 0.25 +0.2 952,333 + MPMX19_04574 0.25 -0.1 952,333 + MPMX19_04574 0.25 -0.9 952,333 + MPMX19_04574 0.25 -0.5 952,333 + MPMX19_04574 0.25 -1.1 952,333 + MPMX19_04574 0.25 -1.5 952,333 + MPMX19_04574 0.25 -0.6 952,333 + MPMX19_04574 0.25 +0.0 952,333 + MPMX19_04574 0.25 -0.9 952,333 + MPMX19_04574 0.25 -0.2 952,333 + MPMX19_04574 0.25 +0.3 952,333 + MPMX19_04574 0.25 -1.7 952,334 - MPMX19_04574 0.25 -1.6 952,334 - MPMX19_04574 0.25 +1.0 952,334 - MPMX19_04574 0.25 +0.4 952,334 - MPMX19_04574 0.25 -0.9 952,334 - MPMX19_04574 0.25 +0.5 952,334 - MPMX19_04574 0.25 +2.3 952,334 - MPMX19_04574 0.25 -0.3 952,334 - MPMX19_04574 0.25 -1.1 952,334 - MPMX19_04574 0.25 -0.0 952,334 - MPMX19_04574 0.25 +0.6 952,334 - MPMX19_04574 0.25 -0.3 952,738 + MPMX19_04574 0.45 -0.0 952,738 + MPMX19_04574 0.45 +0.9 952,739 - MPMX19_04574 0.45 +0.1 952,739 - MPMX19_04574 0.45 -0.6 952,924 + MPMX19_04574 0.54 +0.4 952,925 - MPMX19_04574 0.54 +0.9 952,925 - MPMX19_04574 0.54 +0.1 953,035 + MPMX19_04574 0.60 +1.5 953,036 - MPMX19_04574 0.60 -0.3 953,075 - MPMX19_04574 0.62 -0.8 953,075 - MPMX19_04574 0.62 +0.7 953,774 - +0.4 953,813 - -0.8 953,813 - -0.6 953,813 - -1.0 953,813 - -0.6 953,813 - +0.9 953,813 - -0.3 953,813 - +0.4 953,813 - -1.0 953,877 - -0.5 953,900 - +1.3 954,085 + +0.2 954,085 + -2.1 954,085 + -0.1 954,085 + -0.9 954,085 + +0.1 954,085 + -0.1 954,085 + +2.4 954,085 + +0.3 954,085 + -0.9 954,086 - -0.6 954,086 - +0.3 954,086 - -0.3 954,127 + MPMX19_04575 0.11 +1.9 954,127 + MPMX19_04575 0.11 -0.3 954,128 - MPMX19_04575 0.12 +0.1 954,128 - MPMX19_04575 0.12 -0.2 954,286 + MPMX19_04575 0.26 +0.8 954,286 + MPMX19_04575 0.26 -0.5 954,286 + MPMX19_04575 0.26 +0.7 954,286 + MPMX19_04575 0.26 +1.7 954,286 + MPMX19_04575 0.26 -0.2 954,286 + MPMX19_04575 0.26 +0.1 954,286 + MPMX19_04575 0.26 +0.4 954,286 + MPMX19_04575 0.26 +0.4 954,286 + MPMX19_04575 0.26 -1.1 954,286 + MPMX19_04575 0.26 +0.1 954,286 + MPMX19_04575 0.26 -0.4 954,286 + MPMX19_04575 0.26 +0.2 954,286 + MPMX19_04575 0.26 +0.3 954,286 + MPMX19_04575 0.26 +0.9 954,287 - MPMX19_04575 0.26 -1.0 954,287 - MPMX19_04575 0.26 +0.3 954,287 - MPMX19_04575 0.26 -0.8 954,287 - MPMX19_04575 0.26 -0.8 954,287 - MPMX19_04575 0.26 -0.2 954,287 - MPMX19_04575 0.26 +0.3 954,287 - MPMX19_04575 0.26 -0.2 954,287 - MPMX19_04575 0.26 -0.5 954,287 - MPMX19_04575 0.26 -0.6 954,287 - MPMX19_04575 0.26 -1.5 954,287 - MPMX19_04575 0.26 -0.4 954,287 - MPMX19_04575 0.26 +0.5 954,287 - MPMX19_04575 0.26 -0.1 954,287 - MPMX19_04575 0.26 +0.1 954,287 - MPMX19_04575 0.26 +0.6 954,287 - MPMX19_04575 0.26 -0.3 954,287 - MPMX19_04575 0.26 -1.7 954,287 - MPMX19_04575 0.26 -0.6 954,287 - MPMX19_04575 0.26 +0.8 954,326 - MPMX19_04575 0.29 +0.4 954,580 + MPMX19_04575 0.52 +1.7 954,580 + MPMX19_04575 0.52 -1.9 954,581 - MPMX19_04575 0.52 -0.4 954,581 - MPMX19_04575 0.52 +0.4 954,818 - MPMX19_04575 0.73 -0.9 954,818 - MPMX19_04575 0.73 -0.2
Or see this region's nucleotide sequence