Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04568 and MPMX19_04569 are separated by 175 nucleotides MPMX19_04569 and MPMX19_04570 overlap by 4 nucleotides MPMX19_04570 and MPMX19_04571 are separated by 323 nucleotides MPMX19_04571 and MPMX19_04572 are separated by 118 nucleotides
MPMX19_04568: MPMX19_04568 - hypothetical protein, at 947,663 to 948,064
_04568
MPMX19_04569: MPMX19_04569 - Anti-sigma-F factor NrsF, at 948,240 to 948,875
_04569
MPMX19_04570: MPMX19_04570 - ECF RNA polymerase sigma factor SigF, at 948,872 to 949,429
_04570
MPMX19_04571: MPMX19_04571 - hypothetical protein, at 949,753 to 950,238
_04571
MPMX19_04572: MPMX19_04572 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 950,357 to 951,010
_04572
Position (kb) 948
949
950 Strain fitness (log2 ratio) -2
-1
0
1
2 at 947.972 kb on + strand, within MPMX19_04568 at 947.993 kb on + strand, within MPMX19_04568 at 947.994 kb on - strand, within MPMX19_04568 at 948.175 kb on + strand at 948.175 kb on + strand at 948.175 kb on + strand at 948.175 kb on + strand at 948.193 kb on + strand at 948.307 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.994 kb on + strand, within MPMX19_04570 at 949.094 kb on + strand, within MPMX19_04570 at 949.165 kb on + strand, within MPMX19_04570 at 949.165 kb on + strand, within MPMX19_04570 at 949.165 kb on + strand, within MPMX19_04570 at 949.165 kb on + strand, within MPMX19_04570 at 949.165 kb on + strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.166 kb on - strand, within MPMX19_04570 at 949.384 kb on + strand at 949.384 kb on + strand at 949.385 kb on - strand at 949.385 kb on - strand at 949.385 kb on - strand at 949.479 kb on + strand at 949.479 kb on + strand at 949.479 kb on + strand at 949.479 kb on + strand at 949.479 kb on + strand at 949.479 kb on + strand at 949.479 kb on + strand at 949.479 kb on + strand at 949.479 kb on + strand at 949.479 kb on + strand at 949.479 kb on + strand at 949.480 kb on - strand at 949.480 kb on - strand at 949.480 kb on - strand at 949.480 kb on - strand at 949.480 kb on - strand at 949.480 kb on - strand at 949.480 kb on - strand at 949.480 kb on - strand at 949.480 kb on - strand at 949.480 kb on - strand at 949.557 kb on - strand at 949.606 kb on + strand at 949.606 kb on + strand at 949.606 kb on + strand at 949.606 kb on + strand at 949.606 kb on + strand at 949.607 kb on - strand at 949.629 kb on + strand at 949.629 kb on + strand at 949.629 kb on + strand at 949.629 kb on + strand at 949.630 kb on - strand at 949.630 kb on - strand at 949.630 kb on - strand at 949.647 kb on + strand at 949.648 kb on - strand at 950.007 kb on + strand, within MPMX19_04571 at 950.007 kb on + strand, within MPMX19_04571 at 950.007 kb on + strand, within MPMX19_04571 at 950.007 kb on + strand, within MPMX19_04571 at 950.007 kb on + strand, within MPMX19_04571 at 950.008 kb on - strand, within MPMX19_04571 at 950.008 kb on - strand, within MPMX19_04571 at 950.008 kb on - strand, within MPMX19_04571
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 947,972 + MPMX19_04568 0.77 -1.5 947,993 + MPMX19_04568 0.82 -1.5 947,994 - MPMX19_04568 0.82 +1.9 948,175 + -0.6 948,175 + -1.1 948,175 + -0.3 948,175 + -0.1 948,193 + -1.8 948,307 + MPMX19_04569 0.11 -0.1 948,355 + MPMX19_04569 0.18 -1.5 948,355 + MPMX19_04569 0.18 -1.4 948,355 + MPMX19_04569 0.18 +0.7 948,355 + MPMX19_04569 0.18 -0.2 948,355 + MPMX19_04569 0.18 +1.0 948,355 + MPMX19_04569 0.18 -1.5 948,356 - MPMX19_04569 0.18 -1.4 948,356 - MPMX19_04569 0.18 -0.6 948,356 - MPMX19_04569 0.18 -0.7 948,356 - MPMX19_04569 0.18 -2.4 948,356 - MPMX19_04569 0.18 -1.1 948,356 - MPMX19_04569 0.18 -0.2 948,994 + MPMX19_04570 0.22 +0.1 949,094 + MPMX19_04570 0.40 +0.4 949,165 + MPMX19_04570 0.53 -0.5 949,165 + MPMX19_04570 0.53 +0.2 949,165 + MPMX19_04570 0.53 +0.7 949,165 + MPMX19_04570 0.53 -1.8 949,165 + MPMX19_04570 0.53 -0.1 949,166 - MPMX19_04570 0.53 -0.4 949,166 - MPMX19_04570 0.53 +0.2 949,166 - MPMX19_04570 0.53 -0.5 949,166 - MPMX19_04570 0.53 +0.5 949,166 - MPMX19_04570 0.53 -0.5 949,166 - MPMX19_04570 0.53 +1.1 949,166 - MPMX19_04570 0.53 +2.1 949,166 - MPMX19_04570 0.53 -1.6 949,166 - MPMX19_04570 0.53 -1.6 949,166 - MPMX19_04570 0.53 -0.1 949,166 - MPMX19_04570 0.53 +0.4 949,384 + +1.4 949,384 + -2.1 949,385 - -1.0 949,385 - -0.5 949,385 - -0.1 949,479 + -0.3 949,479 + +0.3 949,479 + -0.9 949,479 + +0.1 949,479 + +1.1 949,479 + -1.8 949,479 + +0.4 949,479 + +1.7 949,479 + -0.4 949,479 + +1.1 949,479 + +0.5 949,480 - +0.4 949,480 - -0.9 949,480 - -0.5 949,480 - -2.3 949,480 - -0.6 949,480 - -0.3 949,480 - -2.0 949,480 - +0.5 949,480 - -0.3 949,480 - -0.6 949,557 - -1.6 949,606 + +0.7 949,606 + -0.4 949,606 + +0.3 949,606 + -2.2 949,606 + -1.3 949,607 - +0.9 949,629 + +0.4 949,629 + -0.3 949,629 + -1.6 949,629 + -0.7 949,630 - -0.1 949,630 - +1.4 949,630 - -1.2 949,647 + -0.4 949,648 - -1.1 950,007 + MPMX19_04571 0.52 +0.7 950,007 + MPMX19_04571 0.52 +1.0 950,007 + MPMX19_04571 0.52 -0.3 950,007 + MPMX19_04571 0.52 -0.4 950,007 + MPMX19_04571 0.52 -1.2 950,008 - MPMX19_04571 0.52 +0.6 950,008 - MPMX19_04571 0.52 -0.9 950,008 - MPMX19_04571 0.52 +1.1
Or see this region's nucleotide sequence