Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04516 and MPMX19_04517 are separated by 70 nucleotides MPMX19_04517 and MPMX19_04518 are separated by 2 nucleotides
MPMX19_04516: MPMX19_04516 - Long-chain-fatty-acid--CoA ligase, at 888,299 to 889,819
_04516
MPMX19_04517: MPMX19_04517 - Glycine cleavage system transcriptional activator, at 889,890 to 890,936
_04517
MPMX19_04518: MPMX19_04518 - Acetyl-CoA:oxalate CoA-transferase, at 890,939 to 892,141
_04518
Position (kb) 889
890
891 Strain fitness (log2 ratio) -2
-1
0
1
2 at 889.053 kb on + strand, within MPMX19_04516 at 889.053 kb on + strand, within MPMX19_04516 at 889.053 kb on + strand, within MPMX19_04516 at 889.053 kb on + strand, within MPMX19_04516 at 889.053 kb on + strand, within MPMX19_04516 at 889.053 kb on + strand, within MPMX19_04516 at 889.053 kb on + strand, within MPMX19_04516 at 889.054 kb on - strand, within MPMX19_04516 at 889.054 kb on - strand, within MPMX19_04516 at 889.054 kb on - strand, within MPMX19_04516 at 889.054 kb on - strand, within MPMX19_04516 at 889.054 kb on - strand, within MPMX19_04516 at 889.054 kb on - strand, within MPMX19_04516 at 889.326 kb on + strand, within MPMX19_04516 at 889.326 kb on + strand, within MPMX19_04516 at 889.326 kb on + strand, within MPMX19_04516 at 889.326 kb on + strand, within MPMX19_04516 at 889.326 kb on + strand, within MPMX19_04516 at 889.326 kb on + strand, within MPMX19_04516 at 889.327 kb on - strand, within MPMX19_04516 at 889.327 kb on - strand, within MPMX19_04516 at 889.327 kb on - strand, within MPMX19_04516 at 889.327 kb on - strand, within MPMX19_04516 at 889.327 kb on - strand, within MPMX19_04516 at 889.327 kb on - strand, within MPMX19_04516 at 889.327 kb on - strand, within MPMX19_04516 at 889.327 kb on - strand, within MPMX19_04516 at 889.524 kb on + strand, within MPMX19_04516 at 889.524 kb on + strand, within MPMX19_04516 at 889.524 kb on + strand, within MPMX19_04516 at 889.524 kb on + strand, within MPMX19_04516 at 889.524 kb on + strand, within MPMX19_04516 at 889.524 kb on + strand, within MPMX19_04516 at 889.525 kb on - strand, within MPMX19_04516 at 889.525 kb on - strand, within MPMX19_04516 at 889.525 kb on - strand, within MPMX19_04516 at 889.545 kb on + strand, within MPMX19_04516 at 889.545 kb on + strand, within MPMX19_04516 at 889.545 kb on + strand, within MPMX19_04516 at 889.545 kb on + strand, within MPMX19_04516 at 889.545 kb on + strand, within MPMX19_04516 at 889.545 kb on + strand, within MPMX19_04516 at 889.545 kb on + strand, within MPMX19_04516 at 889.545 kb on + strand, within MPMX19_04516 at 889.545 kb on + strand, within MPMX19_04516 at 889.546 kb on - strand, within MPMX19_04516 at 889.546 kb on - strand, within MPMX19_04516 at 889.546 kb on - strand, within MPMX19_04516 at 889.546 kb on - strand, within MPMX19_04516 at 889.546 kb on - strand, within MPMX19_04516 at 889.546 kb on - strand, within MPMX19_04516 at 889.566 kb on + strand, within MPMX19_04516 at 889.566 kb on + strand, within MPMX19_04516 at 889.566 kb on + strand, within MPMX19_04516 at 889.566 kb on + strand, within MPMX19_04516 at 889.566 kb on + strand, within MPMX19_04516 at 889.566 kb on + strand, within MPMX19_04516 at 889.566 kb on + strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.567 kb on - strand, within MPMX19_04516 at 889.596 kb on + strand, within MPMX19_04516 at 889.596 kb on + strand, within MPMX19_04516 at 889.596 kb on + strand, within MPMX19_04516 at 889.596 kb on + strand, within MPMX19_04516 at 889.596 kb on + strand, within MPMX19_04516 at 889.596 kb on + strand, within MPMX19_04516 at 889.597 kb on - strand, within MPMX19_04516 at 889.597 kb on - strand, within MPMX19_04516 at 889.597 kb on - strand, within MPMX19_04516 at 889.597 kb on - strand, within MPMX19_04516 at 889.597 kb on - strand, within MPMX19_04516 at 889.597 kb on - strand, within MPMX19_04516 at 889.714 kb on - strand at 889.714 kb on - strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.996 kb on + strand, within MPMX19_04517 at 889.997 kb on - strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.827 kb on + strand, within MPMX19_04517 at 890.827 kb on + strand, within MPMX19_04517 at 890.828 kb on - strand, within MPMX19_04517 at 890.828 kb on - strand, within MPMX19_04517 at 891.363 kb on + strand, within MPMX19_04518 at 891.478 kb on - strand, within MPMX19_04518 at 891.723 kb on + strand, within MPMX19_04518 at 891.759 kb on + strand, within MPMX19_04518 at 891.759 kb on + strand, within MPMX19_04518 at 891.759 kb on + strand, within MPMX19_04518 at 891.759 kb on + strand, within MPMX19_04518 at 891.759 kb on + strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.795 kb on + strand, within MPMX19_04518 at 891.795 kb on + strand, within MPMX19_04518 at 891.911 kb on - strand, within MPMX19_04518 at 891.911 kb on - strand, within MPMX19_04518
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 889,053 + MPMX19_04516 0.50 -0.3 889,053 + MPMX19_04516 0.50 -1.6 889,053 + MPMX19_04516 0.50 +1.4 889,053 + MPMX19_04516 0.50 -0.6 889,053 + MPMX19_04516 0.50 -0.9 889,053 + MPMX19_04516 0.50 -0.8 889,053 + MPMX19_04516 0.50 +1.3 889,054 - MPMX19_04516 0.50 -0.6 889,054 - MPMX19_04516 0.50 -1.0 889,054 - MPMX19_04516 0.50 -1.2 889,054 - MPMX19_04516 0.50 -0.6 889,054 - MPMX19_04516 0.50 +0.9 889,054 - MPMX19_04516 0.50 +0.6 889,326 + MPMX19_04516 0.68 -1.3 889,326 + MPMX19_04516 0.68 -1.5 889,326 + MPMX19_04516 0.68 +0.7 889,326 + MPMX19_04516 0.68 -0.1 889,326 + MPMX19_04516 0.68 -0.5 889,326 + MPMX19_04516 0.68 +0.4 889,327 - MPMX19_04516 0.68 +0.5 889,327 - MPMX19_04516 0.68 -0.9 889,327 - MPMX19_04516 0.68 +0.1 889,327 - MPMX19_04516 0.68 +0.7 889,327 - MPMX19_04516 0.68 +0.8 889,327 - MPMX19_04516 0.68 -0.1 889,327 - MPMX19_04516 0.68 -0.8 889,327 - MPMX19_04516 0.68 +0.8 889,524 + MPMX19_04516 0.81 +0.1 889,524 + MPMX19_04516 0.81 -0.6 889,524 + MPMX19_04516 0.81 +0.1 889,524 + MPMX19_04516 0.81 +0.2 889,524 + MPMX19_04516 0.81 -0.5 889,524 + MPMX19_04516 0.81 -0.5 889,525 - MPMX19_04516 0.81 +0.5 889,525 - MPMX19_04516 0.81 -2.1 889,525 - MPMX19_04516 0.81 -0.1 889,545 + MPMX19_04516 0.82 -0.1 889,545 + MPMX19_04516 0.82 -0.5 889,545 + MPMX19_04516 0.82 +0.1 889,545 + MPMX19_04516 0.82 -1.1 889,545 + MPMX19_04516 0.82 -0.2 889,545 + MPMX19_04516 0.82 +1.2 889,545 + MPMX19_04516 0.82 -0.1 889,545 + MPMX19_04516 0.82 +0.2 889,545 + MPMX19_04516 0.82 +0.1 889,546 - MPMX19_04516 0.82 +1.3 889,546 - MPMX19_04516 0.82 +0.7 889,546 - MPMX19_04516 0.82 -0.5 889,546 - MPMX19_04516 0.82 +0.4 889,546 - MPMX19_04516 0.82 +0.7 889,546 - MPMX19_04516 0.82 -1.7 889,566 + MPMX19_04516 0.83 +0.2 889,566 + MPMX19_04516 0.83 -0.3 889,566 + MPMX19_04516 0.83 +0.5 889,566 + MPMX19_04516 0.83 +2.1 889,566 + MPMX19_04516 0.83 -0.9 889,566 + MPMX19_04516 0.83 +0.8 889,566 + MPMX19_04516 0.83 +0.7 889,567 - MPMX19_04516 0.83 +0.3 889,567 - MPMX19_04516 0.83 -1.0 889,567 - MPMX19_04516 0.83 -0.8 889,567 - MPMX19_04516 0.83 -1.5 889,567 - MPMX19_04516 0.83 -0.8 889,567 - MPMX19_04516 0.83 +0.2 889,567 - MPMX19_04516 0.83 -0.7 889,567 - MPMX19_04516 0.83 -0.7 889,567 - MPMX19_04516 0.83 +0.6 889,567 - MPMX19_04516 0.83 +0.1 889,567 - MPMX19_04516 0.83 -0.0 889,567 - MPMX19_04516 0.83 +0.3 889,567 - MPMX19_04516 0.83 +2.0 889,567 - MPMX19_04516 0.83 -0.4 889,567 - MPMX19_04516 0.83 -1.3 889,567 - MPMX19_04516 0.83 -2.3 889,596 + MPMX19_04516 0.85 +0.8 889,596 + MPMX19_04516 0.85 +1.1 889,596 + MPMX19_04516 0.85 -0.3 889,596 + MPMX19_04516 0.85 +0.3 889,596 + MPMX19_04516 0.85 -0.0 889,596 + MPMX19_04516 0.85 -0.0 889,597 - MPMX19_04516 0.85 -1.1 889,597 - MPMX19_04516 0.85 -1.0 889,597 - MPMX19_04516 0.85 +0.7 889,597 - MPMX19_04516 0.85 +0.6 889,597 - MPMX19_04516 0.85 -1.1 889,597 - MPMX19_04516 0.85 +0.5 889,714 - +0.1 889,714 - +0.9 889,993 + -1.1 889,993 + +0.7 889,993 + -1.1 889,993 + +0.1 889,993 + +0.8 889,993 + -0.9 889,993 + -0.4 889,993 + +1.1 889,993 + -0.8 889,993 + +0.7 889,993 + +1.0 889,993 + +0.1 889,993 + -1.8 889,993 + -1.8 889,993 + -0.2 889,994 - -0.7 889,994 - +0.6 889,994 - -1.1 889,994 - +0.5 889,994 - +0.7 889,994 - -0.4 889,994 - -0.3 889,994 - +0.7 889,994 - -2.6 889,994 - -0.2 889,994 - +0.3 889,994 - +0.5 889,996 + MPMX19_04517 0.10 -0.3 889,997 - MPMX19_04517 0.10 +0.3 890,365 + MPMX19_04517 0.45 -0.3 890,365 + MPMX19_04517 0.45 +0.5 890,365 + MPMX19_04517 0.45 +0.0 890,365 + MPMX19_04517 0.45 -1.5 890,365 + MPMX19_04517 0.45 -0.6 890,365 + MPMX19_04517 0.45 +0.4 890,365 + MPMX19_04517 0.45 +0.5 890,365 + MPMX19_04517 0.45 +0.9 890,365 + MPMX19_04517 0.45 +0.6 890,365 + MPMX19_04517 0.45 -2.5 890,365 + MPMX19_04517 0.45 -0.3 890,365 + MPMX19_04517 0.45 -0.1 890,365 + MPMX19_04517 0.45 +0.9 890,365 + MPMX19_04517 0.45 -0.5 890,365 + MPMX19_04517 0.45 -0.7 890,365 + MPMX19_04517 0.45 -1.1 890,366 - MPMX19_04517 0.45 +0.2 890,366 - MPMX19_04517 0.45 +0.4 890,366 - MPMX19_04517 0.45 +1.0 890,366 - MPMX19_04517 0.45 +1.2 890,366 - MPMX19_04517 0.45 -0.5 890,366 - MPMX19_04517 0.45 +0.2 890,366 - MPMX19_04517 0.45 -0.6 890,366 - MPMX19_04517 0.45 -0.1 890,366 - MPMX19_04517 0.45 +0.4 890,366 - MPMX19_04517 0.45 -2.0 890,366 - MPMX19_04517 0.45 +0.9 890,366 - MPMX19_04517 0.45 -0.3 890,366 - MPMX19_04517 0.45 +1.1 890,366 - MPMX19_04517 0.45 -0.2 890,366 - MPMX19_04517 0.45 +0.5 890,366 - MPMX19_04517 0.45 -0.6 890,366 - MPMX19_04517 0.45 -0.1 890,825 + MPMX19_04517 0.89 +0.3 890,825 + MPMX19_04517 0.89 +1.1 890,825 + MPMX19_04517 0.89 +0.0 890,825 + MPMX19_04517 0.89 -0.6 890,825 + MPMX19_04517 0.89 +1.4 890,825 + MPMX19_04517 0.89 -0.3 890,825 + MPMX19_04517 0.89 +0.3 890,825 + MPMX19_04517 0.89 +0.6 890,825 + MPMX19_04517 0.89 -0.4 890,826 - MPMX19_04517 0.89 +0.0 890,826 - MPMX19_04517 0.89 -0.5 890,826 - MPMX19_04517 0.89 -0.5 890,826 - MPMX19_04517 0.89 +0.2 890,826 - MPMX19_04517 0.89 -0.6 890,826 - MPMX19_04517 0.89 +0.0 890,826 - MPMX19_04517 0.89 -0.5 890,826 - MPMX19_04517 0.89 +1.3 890,826 - MPMX19_04517 0.89 -1.4 890,826 - MPMX19_04517 0.89 -2.7 890,827 + MPMX19_04517 0.89 +1.4 890,827 + MPMX19_04517 0.89 +0.9 890,828 - MPMX19_04517 0.90 +0.5 890,828 - MPMX19_04517 0.90 +0.5 891,363 + MPMX19_04518 0.35 -2.6 891,478 - MPMX19_04518 0.45 -0.5 891,723 + MPMX19_04518 0.65 -0.6 891,759 + MPMX19_04518 0.68 -1.2 891,759 + MPMX19_04518 0.68 -0.5 891,759 + MPMX19_04518 0.68 +1.1 891,759 + MPMX19_04518 0.68 +0.9 891,759 + MPMX19_04518 0.68 +1.2 891,760 - MPMX19_04518 0.68 +1.2 891,760 - MPMX19_04518 0.68 -0.3 891,760 - MPMX19_04518 0.68 +1.0 891,760 - MPMX19_04518 0.68 +0.1 891,760 - MPMX19_04518 0.68 +0.7 891,760 - MPMX19_04518 0.68 +0.6 891,760 - MPMX19_04518 0.68 -1.1 891,795 + MPMX19_04518 0.71 +1.1 891,795 + MPMX19_04518 0.71 +0.3 891,911 - MPMX19_04518 0.81 -0.8 891,911 - MPMX19_04518 0.81 -0.8
Or see this region's nucleotide sequence