Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04490 and MPMX19_04491 are separated by 16 nucleotides MPMX19_04491 and MPMX19_04492 are separated by 233 nucleotides MPMX19_04492 and MPMX19_04493 are separated by 215 nucleotides
MPMX19_04490: MPMX19_04490 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 856,745 to 857,542
_04490
MPMX19_04491: MPMX19_04491 - Sensor histidine kinase RcsC, at 857,559 to 860,075
_04491
MPMX19_04492: MPMX19_04492 - hypothetical protein, at 860,309 to 860,551
_04492
MPMX19_04493: MPMX19_04493 - PCP degradation transcriptional activation protein, at 860,767 to 861,780
_04493
Position (kb) 857
858
859
860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 856.621 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.923 kb on - strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.546 kb on + strand at 857.546 kb on + strand at 857.546 kb on + strand at 857.546 kb on + strand at 857.547 kb on - strand at 857.560 kb on + strand at 857.561 kb on - strand at 857.671 kb on + strand at 857.672 kb on - strand at 857.672 kb on - strand at 857.672 kb on - strand at 858.064 kb on + strand, within MPMX19_04491 at 858.064 kb on + strand, within MPMX19_04491 at 858.065 kb on - strand, within MPMX19_04491 at 858.874 kb on + strand, within MPMX19_04491 at 858.874 kb on + strand, within MPMX19_04491 at 858.874 kb on + strand, within MPMX19_04491 at 858.874 kb on + strand, within MPMX19_04491 at 858.874 kb on + strand, within MPMX19_04491 at 858.875 kb on - strand, within MPMX19_04491 at 858.875 kb on - strand, within MPMX19_04491 at 858.875 kb on - strand, within MPMX19_04491 at 858.875 kb on - strand, within MPMX19_04491 at 858.875 kb on - strand, within MPMX19_04491 at 858.877 kb on + strand, within MPMX19_04491 at 858.877 kb on + strand, within MPMX19_04491 at 858.877 kb on + strand, within MPMX19_04491 at 858.877 kb on + strand, within MPMX19_04491 at 858.878 kb on - strand, within MPMX19_04491 at 858.878 kb on - strand, within MPMX19_04491 at 858.878 kb on - strand, within MPMX19_04491 at 858.878 kb on - strand, within MPMX19_04491 at 858.878 kb on - strand, within MPMX19_04491 at 858.905 kb on - strand, within MPMX19_04491 at 858.905 kb on - strand, within MPMX19_04491 at 858.916 kb on + strand, within MPMX19_04491 at 858.916 kb on + strand, within MPMX19_04491 at 858.917 kb on - strand, within MPMX19_04491 at 858.917 kb on - strand, within MPMX19_04491 at 859.460 kb on - strand, within MPMX19_04491 at 859.460 kb on - strand, within MPMX19_04491 at 859.711 kb on + strand, within MPMX19_04491 at 859.712 kb on - strand, within MPMX19_04491 at 859.712 kb on - strand, within MPMX19_04491 at 859.712 kb on - strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.198 kb on + strand at 860.198 kb on + strand at 860.198 kb on + strand at 860.199 kb on - strand at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.528 kb on + strand at 860.528 kb on + strand at 860.529 kb on - strand at 860.529 kb on - strand at 860.529 kb on - strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.611 kb on - strand at 860.611 kb on - strand at 860.676 kb on + strand at 860.676 kb on + strand at 860.676 kb on + strand at 860.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 856,621 + +0.9 856,710 + +0.3 856,710 + +0.6 856,710 + -0.1 856,710 + -0.8 856,711 - +1.2 856,711 - +1.0 856,711 - +0.1 856,711 - -0.2 856,711 - +0.5 856,796 + -2.0 856,796 + +0.7 856,796 + +0.4 856,796 + +2.1 856,796 + +0.8 856,797 - -1.2 856,797 - +0.5 856,797 - -1.6 856,797 - +0.4 856,797 - +0.2 856,797 - -0.1 856,797 - +1.2 856,797 - -0.3 856,923 - MPMX19_04490 0.22 +0.1 857,249 + MPMX19_04490 0.63 +0.7 857,249 + MPMX19_04490 0.63 -1.5 857,249 + MPMX19_04490 0.63 -1.9 857,249 + MPMX19_04490 0.63 -1.1 857,249 + MPMX19_04490 0.63 -1.3 857,249 + MPMX19_04490 0.63 +1.1 857,249 + MPMX19_04490 0.63 -0.6 857,249 + MPMX19_04490 0.63 -0.8 857,249 + MPMX19_04490 0.63 +0.6 857,250 - MPMX19_04490 0.63 -0.5 857,250 - MPMX19_04490 0.63 -0.9 857,250 - MPMX19_04490 0.63 -1.8 857,250 - MPMX19_04490 0.63 +0.2 857,250 - MPMX19_04490 0.63 -0.5 857,250 - MPMX19_04490 0.63 -3.5 857,250 - MPMX19_04490 0.63 -0.7 857,250 - MPMX19_04490 0.63 -0.3 857,250 - MPMX19_04490 0.63 -0.1 857,250 - MPMX19_04490 0.63 -1.8 857,250 - MPMX19_04490 0.63 -1.5 857,435 + MPMX19_04490 0.86 -2.1 857,435 + MPMX19_04490 0.86 +0.1 857,435 + MPMX19_04490 0.86 +0.3 857,435 + MPMX19_04490 0.86 +0.2 857,436 - MPMX19_04490 0.87 +0.1 857,436 - MPMX19_04490 0.87 -0.8 857,436 - MPMX19_04490 0.87 -1.1 857,546 + +1.1 857,546 + -0.2 857,546 + -0.2 857,546 + -0.1 857,547 - -0.3 857,560 + -0.2 857,561 - -0.4 857,671 + -1.9 857,672 - +0.2 857,672 - -1.1 857,672 - -0.6 858,064 + MPMX19_04491 0.20 -0.6 858,064 + MPMX19_04491 0.20 +0.5 858,065 - MPMX19_04491 0.20 -0.4 858,874 + MPMX19_04491 0.52 -0.3 858,874 + MPMX19_04491 0.52 -1.5 858,874 + MPMX19_04491 0.52 -0.3 858,874 + MPMX19_04491 0.52 -1.5 858,874 + MPMX19_04491 0.52 -0.1 858,875 - MPMX19_04491 0.52 -1.0 858,875 - MPMX19_04491 0.52 -1.6 858,875 - MPMX19_04491 0.52 -0.3 858,875 - MPMX19_04491 0.52 +1.9 858,875 - MPMX19_04491 0.52 -1.5 858,877 + MPMX19_04491 0.52 -1.3 858,877 + MPMX19_04491 0.52 +0.4 858,877 + MPMX19_04491 0.52 -0.8 858,877 + MPMX19_04491 0.52 -2.2 858,878 - MPMX19_04491 0.52 -1.3 858,878 - MPMX19_04491 0.52 -0.1 858,878 - MPMX19_04491 0.52 -0.8 858,878 - MPMX19_04491 0.52 -0.9 858,878 - MPMX19_04491 0.52 +0.4 858,905 - MPMX19_04491 0.53 +0.0 858,905 - MPMX19_04491 0.53 +0.8 858,916 + MPMX19_04491 0.54 +0.6 858,916 + MPMX19_04491 0.54 -2.6 858,917 - MPMX19_04491 0.54 +0.5 858,917 - MPMX19_04491 0.54 -0.1 859,460 - MPMX19_04491 0.76 -2.1 859,460 - MPMX19_04491 0.76 -0.3 859,711 + MPMX19_04491 0.85 -0.3 859,712 - MPMX19_04491 0.86 -0.6 859,712 - MPMX19_04491 0.86 +0.5 859,712 - MPMX19_04491 0.86 -0.4 859,782 + MPMX19_04491 0.88 -0.0 859,782 + MPMX19_04491 0.88 +0.9 859,782 + MPMX19_04491 0.88 +0.5 859,783 - MPMX19_04491 0.88 +1.0 859,783 - MPMX19_04491 0.88 +0.2 859,783 - MPMX19_04491 0.88 -1.1 859,783 - MPMX19_04491 0.88 -0.5 859,903 + +0.5 859,903 + +0.6 859,903 + +0.1 859,903 + +0.1 859,903 + +0.6 859,903 + -0.8 859,903 + -1.5 859,904 - +0.3 859,904 - +0.0 859,904 - +0.4 859,904 - -1.1 859,904 - -0.1 859,904 - -0.6 859,904 - +0.9 859,915 + +1.4 859,915 + +0.4 859,915 + -1.8 859,915 + +0.8 859,915 + -0.1 859,916 - +0.7 859,916 - +0.2 859,916 - -1.6 859,916 - +0.7 859,916 - -0.4 859,916 - -0.5 860,196 + -0.6 860,196 + -0.8 860,196 + +0.8 860,196 + -1.6 860,196 + +0.1 860,197 - +0.6 860,197 - +0.2 860,197 - -0.3 860,197 - +1.0 860,197 - -0.6 860,197 - +0.7 860,198 + -0.1 860,198 + +0.6 860,198 + -0.0 860,199 - +0.5 860,349 + MPMX19_04492 0.16 -0.6 860,349 + MPMX19_04492 0.16 +0.3 860,349 + MPMX19_04492 0.16 +0.7 860,349 + MPMX19_04492 0.16 -0.6 860,349 + MPMX19_04492 0.16 -0.3 860,350 - MPMX19_04492 0.17 +1.4 860,350 - MPMX19_04492 0.17 -1.3 860,350 - MPMX19_04492 0.17 -0.8 860,528 + +0.8 860,528 + -0.3 860,529 - -0.1 860,529 - +1.0 860,529 - -1.3 860,558 + +0.4 860,558 + +0.5 860,558 + +0.1 860,558 + +1.0 860,610 + -1.3 860,610 + -0.2 860,610 + -0.3 860,610 + -0.2 860,610 + +0.0 860,610 + +0.4 860,610 + +0.9 860,611 - -0.3 860,611 - -0.3 860,676 + -1.9 860,676 + +1.0 860,676 + -1.6 860,677 - -0.3
Or see this region's nucleotide sequence