Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04439

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04438 and MPMX19_04439 are separated by 293 nucleotidesMPMX19_04439 and MPMX19_04440 are separated by 40 nucleotides MPMX19_04438: MPMX19_04438 - hypothetical protein, at 804,420 to 805,109 _04438 MPMX19_04439: MPMX19_04439 - Pca regulon regulatory protein, at 805,403 to 806,236 _04439 MPMX19_04440: MPMX19_04440 - hypothetical protein, at 806,277 to 807,992 _04440 Position (kb) 805 806 807Strain fitness (log2 ratio) -2 -1 0 1 2at 804.451 kb on + strandat 804.451 kb on + strandat 804.451 kb on + strandat 804.451 kb on + strandat 804.451 kb on + strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.452 kb on - strandat 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.602 kb on + strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.603 kb on - strand, within MPMX19_04438at 804.694 kb on + strand, within MPMX19_04438at 804.694 kb on + strand, within MPMX19_04438at 804.728 kb on + strand, within MPMX19_04438at 804.728 kb on + strand, within MPMX19_04438at 804.728 kb on + strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.729 kb on - strand, within MPMX19_04438at 804.730 kb on + strand, within MPMX19_04438at 804.730 kb on + strand, within MPMX19_04438at 804.730 kb on + strand, within MPMX19_04438at 804.730 kb on + strand, within MPMX19_04438at 804.730 kb on + strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 804.731 kb on - strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.006 kb on + strand, within MPMX19_04438at 805.007 kb on - strand, within MPMX19_04438at 805.007 kb on - strand, within MPMX19_04438at 805.045 kb on + strandat 805.046 kb on + strandat 805.046 kb on - strandat 805.046 kb on - strandat 805.046 kb on - strandat 805.206 kb on + strandat 805.206 kb on + strandat 805.206 kb on + strandat 805.206 kb on + strandat 805.207 kb on - strandat 805.207 kb on - strandat 805.245 kb on + strandat 805.312 kb on + strandat 805.312 kb on + strandat 805.313 kb on - strandat 805.385 kb on + strandat 805.385 kb on + strandat 805.385 kb on + strandat 805.385 kb on + strandat 805.386 kb on - strandat 805.386 kb on - strandat 805.386 kb on - strandat 805.628 kb on + strand, within MPMX19_04439at 805.628 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.802 kb on + strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.803 kb on - strand, within MPMX19_04439at 805.804 kb on + strand, within MPMX19_04439at 805.804 kb on + strand, within MPMX19_04439at 805.804 kb on + strand, within MPMX19_04439at 805.805 kb on - strand, within MPMX19_04439at 805.805 kb on - strand, within MPMX19_04439at 805.871 kb on + strand, within MPMX19_04439at 805.871 kb on + strand, within MPMX19_04439at 805.872 kb on - strand, within MPMX19_04439at 805.931 kb on + strand, within MPMX19_04439at 805.931 kb on + strand, within MPMX19_04439at 805.931 kb on + strand, within MPMX19_04439at 805.931 kb on + strand, within MPMX19_04439at 805.932 kb on - strand, within MPMX19_04439at 805.932 kb on - strand, within MPMX19_04439at 806.953 kb on + strand, within MPMX19_04440at 806.953 kb on + strand, within MPMX19_04440at 806.953 kb on + strand, within MPMX19_04440at 806.954 kb on - strand, within MPMX19_04440at 806.954 kb on - strand, within MPMX19_04440at 806.954 kb on - strand, within MPMX19_04440at 806.954 kb on - strand, within MPMX19_04440at 806.954 kb on - strand, within MPMX19_04440at 806.954 kb on - strand, within MPMX19_04440at 806.954 kb on - strand, within MPMX19_04440at 806.954 kb on - strand, within MPMX19_04440at 807.001 kb on + strand, within MPMX19_04440at 807.052 kb on + strand, within MPMX19_04440at 807.052 kb on + strand, within MPMX19_04440at 807.052 kb on + strand, within MPMX19_04440at 807.052 kb on + strand, within MPMX19_04440at 807.052 kb on + strand, within MPMX19_04440at 807.053 kb on - strand, within MPMX19_04440at 807.053 kb on - strand, within MPMX19_04440at 807.053 kb on - strand, within MPMX19_04440at 807.053 kb on - strand, within MPMX19_04440at 807.053 kb on - strand, within MPMX19_04440at 807.053 kb on - strand, within MPMX19_04440at 807.053 kb on - strand, within MPMX19_04440at 807.053 kb on - strand, within MPMX19_04440at 807.081 kb on + strand, within MPMX19_04440

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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804,451 + +0.5
804,451 + +1.0
804,451 + +0.1
804,451 + +0.2
804,451 + -1.5
804,452 - +1.3
804,452 - -1.2
804,452 - -2.6
804,452 - +0.5
804,452 - -1.2
804,452 - -1.1
804,452 - +0.4
804,452 - -0.3
804,602 + MPMX19_04438 0.26 +0.5
804,602 + MPMX19_04438 0.26 -0.9
804,602 + MPMX19_04438 0.26 -1.9
804,602 + MPMX19_04438 0.26 -0.6
804,602 + MPMX19_04438 0.26 -0.3
804,602 + MPMX19_04438 0.26 +0.0
804,602 + MPMX19_04438 0.26 -0.6
804,603 - MPMX19_04438 0.27 -1.7
804,603 - MPMX19_04438 0.27 +1.7
804,603 - MPMX19_04438 0.27 +0.2
804,603 - MPMX19_04438 0.27 -0.1
804,603 - MPMX19_04438 0.27 +1.3
804,603 - MPMX19_04438 0.27 +0.6
804,603 - MPMX19_04438 0.27 +1.2
804,603 - MPMX19_04438 0.27 +0.8
804,603 - MPMX19_04438 0.27 -0.4
804,694 + MPMX19_04438 0.40 +0.7
804,694 + MPMX19_04438 0.40 -1.5
804,728 + MPMX19_04438 0.45 -0.1
804,728 + MPMX19_04438 0.45 -0.2
804,728 + MPMX19_04438 0.45 +0.4
804,729 - MPMX19_04438 0.45 -1.2
804,729 - MPMX19_04438 0.45 -1.4
804,729 - MPMX19_04438 0.45 -1.3
804,729 - MPMX19_04438 0.45 -0.5
804,729 - MPMX19_04438 0.45 -1.0
804,729 - MPMX19_04438 0.45 +1.2
804,729 - MPMX19_04438 0.45 -0.2
804,729 - MPMX19_04438 0.45 -0.7
804,729 - MPMX19_04438 0.45 -0.6
804,729 - MPMX19_04438 0.45 +1.2
804,730 + MPMX19_04438 0.45 +0.7
804,730 + MPMX19_04438 0.45 -0.0
804,730 + MPMX19_04438 0.45 +2.3
804,730 + MPMX19_04438 0.45 -1.0
804,730 + MPMX19_04438 0.45 -0.8
804,731 - MPMX19_04438 0.45 -0.4
804,731 - MPMX19_04438 0.45 -0.1
804,731 - MPMX19_04438 0.45 -1.0
804,731 - MPMX19_04438 0.45 +0.3
804,731 - MPMX19_04438 0.45 -0.3
804,731 - MPMX19_04438 0.45 -0.6
805,006 + MPMX19_04438 0.85 +1.3
805,006 + MPMX19_04438 0.85 +1.0
805,006 + MPMX19_04438 0.85 +1.7
805,006 + MPMX19_04438 0.85 -1.2
805,006 + MPMX19_04438 0.85 -1.3
805,006 + MPMX19_04438 0.85 -0.6
805,006 + MPMX19_04438 0.85 -0.2
805,007 - MPMX19_04438 0.85 +1.7
805,007 - MPMX19_04438 0.85 +0.1
805,045 + -1.5
805,046 + +0.2
805,046 - -1.3
805,046 - -1.5
805,046 - -0.1
805,206 + +1.2
805,206 + +0.4
805,206 + -0.1
805,206 + -1.0
805,207 - +0.9
805,207 - -1.6
805,245 + -0.3
805,312 + -0.1
805,312 + -1.5
805,313 - -2.1
805,385 + -1.3
805,385 + -1.2
805,385 + -0.3
805,385 + -0.7
805,386 - -1.5
805,386 - -1.0
805,386 - -0.1
805,628 + MPMX19_04439 0.27 +0.3
805,628 + MPMX19_04439 0.27 -0.4
805,802 + MPMX19_04439 0.48 -0.9
805,802 + MPMX19_04439 0.48 +0.7
805,802 + MPMX19_04439 0.48 -1.1
805,802 + MPMX19_04439 0.48 -2.0
805,802 + MPMX19_04439 0.48 -1.0
805,802 + MPMX19_04439 0.48 -0.8
805,802 + MPMX19_04439 0.48 -0.8
805,802 + MPMX19_04439 0.48 -0.3
805,802 + MPMX19_04439 0.48 +0.7
805,802 + MPMX19_04439 0.48 +0.1
805,802 + MPMX19_04439 0.48 +1.2
805,802 + MPMX19_04439 0.48 +0.6
805,802 + MPMX19_04439 0.48 -0.2
805,802 + MPMX19_04439 0.48 -0.1
805,802 + MPMX19_04439 0.48 +1.5
805,802 + MPMX19_04439 0.48 -0.4
805,802 + MPMX19_04439 0.48 +1.7
805,803 - MPMX19_04439 0.48 -1.5
805,803 - MPMX19_04439 0.48 +0.7
805,803 - MPMX19_04439 0.48 +0.9
805,803 - MPMX19_04439 0.48 -0.9
805,803 - MPMX19_04439 0.48 +0.1
805,803 - MPMX19_04439 0.48 -0.9
805,803 - MPMX19_04439 0.48 -0.1
805,803 - MPMX19_04439 0.48 -1.1
805,803 - MPMX19_04439 0.48 +0.9
805,803 - MPMX19_04439 0.48 +0.3
805,803 - MPMX19_04439 0.48 -0.1
805,803 - MPMX19_04439 0.48 +0.4
805,803 - MPMX19_04439 0.48 -0.4
805,803 - MPMX19_04439 0.48 -0.9
805,803 - MPMX19_04439 0.48 +0.1
805,803 - MPMX19_04439 0.48 +0.4
805,803 - MPMX19_04439 0.48 -1.6
805,803 - MPMX19_04439 0.48 +0.3
805,804 + MPMX19_04439 0.48 -0.6
805,804 + MPMX19_04439 0.48 +0.2
805,804 + MPMX19_04439 0.48 +0.7
805,805 - MPMX19_04439 0.48 -0.3
805,805 - MPMX19_04439 0.48 +0.1
805,871 + MPMX19_04439 0.56 +1.4
805,871 + MPMX19_04439 0.56 -0.3
805,872 - MPMX19_04439 0.56 -0.1
805,931 + MPMX19_04439 0.63 -1.5
805,931 + MPMX19_04439 0.63 -0.6
805,931 + MPMX19_04439 0.63 -0.0
805,931 + MPMX19_04439 0.63 +1.7
805,932 - MPMX19_04439 0.63 -0.5
805,932 - MPMX19_04439 0.63 +0.7
806,953 + MPMX19_04440 0.39 +0.4
806,953 + MPMX19_04440 0.39 +0.8
806,953 + MPMX19_04440 0.39 +0.2
806,954 - MPMX19_04440 0.39 -0.3
806,954 - MPMX19_04440 0.39 -1.2
806,954 - MPMX19_04440 0.39 -1.3
806,954 - MPMX19_04440 0.39 +1.4
806,954 - MPMX19_04440 0.39 -0.0
806,954 - MPMX19_04440 0.39 -1.3
806,954 - MPMX19_04440 0.39 -0.1
806,954 - MPMX19_04440 0.39 -0.3
807,001 + MPMX19_04440 0.42 -0.1
807,052 + MPMX19_04440 0.45 -0.2
807,052 + MPMX19_04440 0.45 -0.1
807,052 + MPMX19_04440 0.45 +1.2
807,052 + MPMX19_04440 0.45 -0.1
807,052 + MPMX19_04440 0.45 +0.4
807,053 - MPMX19_04440 0.45 +1.5
807,053 - MPMX19_04440 0.45 -0.9
807,053 - MPMX19_04440 0.45 +1.4
807,053 - MPMX19_04440 0.45 +0.0
807,053 - MPMX19_04440 0.45 -0.8
807,053 - MPMX19_04440 0.45 +2.4
807,053 - MPMX19_04440 0.45 +2.3
807,053 - MPMX19_04440 0.45 +0.2
807,081 + MPMX19_04440 0.47 -1.3

Or see this region's nucleotide sequence