Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04329 and MPMX19_04330 are separated by 192 nucleotides MPMX19_04330 and MPMX19_04331 are separated by 36 nucleotides MPMX19_04331 and MPMX19_04332 are separated by 130 nucleotides MPMX19_04332 and MPMX19_04333 are separated by 85 nucleotides
MPMX19_04329: MPMX19_04329 - Deoxyguanosinetriphosphate triphosphohydrolase-like protein, at 693,739 to 694,938
_04329
MPMX19_04330: MPMX19_04330 - Iron-sulfur cluster insertion protein ErpA, at 695,131 to 695,487
_04330
MPMX19_04331: MPMX19_04331 - Exodeoxyribonuclease, at 695,524 to 696,297
_04331
MPMX19_04332: MPMX19_04332 - hypothetical protein, at 696,428 to 697,000
_04332
MPMX19_04333: MPMX19_04333 - tRNA-Ser, at 697,086 to 697,175
_04333
Position (kb) 695
696
697 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 694.740 kb on - strand, within MPMX19_04329 at 694.743 kb on - strand, within MPMX19_04329 at 694.743 kb on - strand, within MPMX19_04329 at 694.743 kb on - strand, within MPMX19_04329 at 694.758 kb on - strand, within MPMX19_04329 at 694.758 kb on - strand, within MPMX19_04329 at 694.758 kb on - strand, within MPMX19_04329 at 694.951 kb on - strand at 694.990 kb on - strand at 694.990 kb on - strand at 694.990 kb on - strand at 694.990 kb on - strand at 694.990 kb on - strand at 694.990 kb on - strand at 694.990 kb on - strand at 694.990 kb on - strand at 694.990 kb on - strand at 694.990 kb on - strand at 695.060 kb on + strand at 695.060 kb on + strand at 695.060 kb on + strand at 695.060 kb on + strand at 695.060 kb on + strand at 695.060 kb on + strand at 695.060 kb on + strand at 695.060 kb on + strand at 695.060 kb on + strand at 695.061 kb on - strand at 695.061 kb on - strand at 695.061 kb on - strand at 695.061 kb on - strand at 695.061 kb on - strand at 695.061 kb on - strand at 695.061 kb on - strand at 695.087 kb on + strand at 695.087 kb on + strand at 695.087 kb on + strand at 695.087 kb on + strand at 695.087 kb on + strand at 695.087 kb on + strand at 695.087 kb on + strand at 695.087 kb on + strand at 695.087 kb on + strand at 695.088 kb on - strand at 695.088 kb on - strand at 695.677 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.707 kb on + strand, within MPMX19_04331 at 695.708 kb on - strand, within MPMX19_04331 at 695.708 kb on - strand, within MPMX19_04331 at 695.708 kb on - strand, within MPMX19_04331 at 695.708 kb on - strand, within MPMX19_04331 at 695.708 kb on - strand, within MPMX19_04331 at 695.708 kb on - strand, within MPMX19_04331 at 695.708 kb on - strand, within MPMX19_04331 at 695.708 kb on - strand, within MPMX19_04331 at 695.708 kb on - strand, within MPMX19_04331 at 695.794 kb on + strand, within MPMX19_04331 at 695.794 kb on + strand, within MPMX19_04331 at 695.794 kb on + strand, within MPMX19_04331 at 695.794 kb on + strand, within MPMX19_04331 at 695.794 kb on + strand, within MPMX19_04331 at 695.795 kb on - strand, within MPMX19_04331 at 695.795 kb on - strand, within MPMX19_04331 at 695.795 kb on - strand, within MPMX19_04331 at 695.836 kb on + strand, within MPMX19_04331 at 695.836 kb on + strand, within MPMX19_04331 at 695.836 kb on + strand, within MPMX19_04331 at 695.836 kb on + strand, within MPMX19_04331 at 695.836 kb on + strand, within MPMX19_04331 at 695.836 kb on + strand, within MPMX19_04331 at 695.836 kb on + strand, within MPMX19_04331 at 695.837 kb on - strand, within MPMX19_04331 at 695.837 kb on - strand, within MPMX19_04331 at 695.878 kb on + strand, within MPMX19_04331 at 695.878 kb on + strand, within MPMX19_04331 at 695.878 kb on + strand, within MPMX19_04331 at 695.878 kb on + strand, within MPMX19_04331 at 695.878 kb on + strand, within MPMX19_04331 at 695.879 kb on - strand, within MPMX19_04331 at 695.879 kb on - strand, within MPMX19_04331 at 695.879 kb on - strand, within MPMX19_04331 at 695.879 kb on - strand, within MPMX19_04331 at 695.905 kb on + strand, within MPMX19_04331 at 695.905 kb on + strand, within MPMX19_04331 at 695.905 kb on + strand, within MPMX19_04331 at 695.905 kb on + strand, within MPMX19_04331 at 695.905 kb on + strand, within MPMX19_04331 at 695.905 kb on + strand, within MPMX19_04331 at 695.905 kb on + strand, within MPMX19_04331 at 695.905 kb on + strand, within MPMX19_04331 at 695.906 kb on - strand, within MPMX19_04331 at 695.906 kb on - strand, within MPMX19_04331 at 695.906 kb on - strand, within MPMX19_04331 at 695.906 kb on - strand, within MPMX19_04331 at 695.906 kb on - strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.962 kb on + strand, within MPMX19_04331 at 695.963 kb on - strand, within MPMX19_04331 at 695.963 kb on - strand, within MPMX19_04331 at 695.963 kb on - strand, within MPMX19_04331 at 695.963 kb on - strand, within MPMX19_04331 at 695.963 kb on - strand, within MPMX19_04331 at 695.963 kb on - strand, within MPMX19_04331 at 695.963 kb on - strand, within MPMX19_04331 at 696.085 kb on + strand, within MPMX19_04331 at 696.085 kb on + strand, within MPMX19_04331 at 696.086 kb on - strand, within MPMX19_04331 at 696.115 kb on + strand, within MPMX19_04331 at 696.115 kb on + strand, within MPMX19_04331 at 696.115 kb on + strand, within MPMX19_04331 at 696.115 kb on + strand, within MPMX19_04331 at 696.115 kb on + strand, within MPMX19_04331 at 696.116 kb on - strand, within MPMX19_04331 at 696.116 kb on - strand, within MPMX19_04331 at 696.116 kb on - strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.117 kb on + strand, within MPMX19_04331 at 696.118 kb on - strand, within MPMX19_04331 at 696.118 kb on - strand, within MPMX19_04331 at 696.118 kb on - strand, within MPMX19_04331 at 696.118 kb on - strand, within MPMX19_04331 at 696.118 kb on - strand, within MPMX19_04331 at 696.118 kb on - strand, within MPMX19_04331 at 696.130 kb on + strand, within MPMX19_04331 at 696.334 kb on - strand at 696.362 kb on + strand at 696.362 kb on + strand at 696.362 kb on + strand at 696.362 kb on + strand at 696.363 kb on - strand at 696.363 kb on - strand at 696.363 kb on - strand at 696.363 kb on - strand at 696.418 kb on + strand at 696.419 kb on - strand at 696.419 kb on - strand at 696.419 kb on - strand at 696.419 kb on - strand at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.722 kb on + strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.723 kb on - strand, within MPMX19_04332 at 696.833 kb on + strand, within MPMX19_04332 at 697.183 kb on + strand at 697.184 kb on - strand at 697.184 kb on - strand at 697.184 kb on - strand at 697.184 kb on - strand at 697.184 kb on - strand at 697.258 kb on + strand at 697.258 kb on + strand at 697.259 kb on - strand at 697.259 kb on - strand at 697.259 kb on - strand at 697.259 kb on - strand at 697.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 694,740 - MPMX19_04329 0.83 -1.9 694,743 - MPMX19_04329 0.84 -1.1 694,743 - MPMX19_04329 0.84 -0.3 694,743 - MPMX19_04329 0.84 -0.3 694,758 - MPMX19_04329 0.85 +1.7 694,758 - MPMX19_04329 0.85 +1.5 694,758 - MPMX19_04329 0.85 +1.2 694,951 - +1.1 694,990 - -2.1 694,990 - +1.0 694,990 - -0.9 694,990 - -0.5 694,990 - +0.1 694,990 - -0.5 694,990 - +0.1 694,990 - -1.8 694,990 - -1.4 694,990 - -1.3 695,060 + -2.1 695,060 + +0.8 695,060 + -3.6 695,060 + +0.1 695,060 + +0.1 695,060 + -1.3 695,060 + -0.8 695,060 + -2.2 695,060 + -0.8 695,061 - +0.2 695,061 - +1.4 695,061 - -0.2 695,061 - -2.4 695,061 - -0.6 695,061 - +0.7 695,061 - +1.7 695,087 + -1.3 695,087 + +0.1 695,087 + -0.9 695,087 + -0.2 695,087 + -1.0 695,087 + -2.7 695,087 + -1.2 695,087 + -0.3 695,087 + +0.7 695,088 - -0.9 695,088 - +0.7 695,677 + MPMX19_04331 0.20 -0.4 695,707 + MPMX19_04331 0.24 -0.9 695,707 + MPMX19_04331 0.24 +0.1 695,707 + MPMX19_04331 0.24 -1.9 695,707 + MPMX19_04331 0.24 -0.9 695,707 + MPMX19_04331 0.24 -2.7 695,707 + MPMX19_04331 0.24 +0.6 695,707 + MPMX19_04331 0.24 +0.1 695,707 + MPMX19_04331 0.24 +0.7 695,707 + MPMX19_04331 0.24 -2.0 695,707 + MPMX19_04331 0.24 -1.4 695,707 + MPMX19_04331 0.24 -2.1 695,707 + MPMX19_04331 0.24 -1.0 695,708 - MPMX19_04331 0.24 -0.9 695,708 - MPMX19_04331 0.24 -0.6 695,708 - MPMX19_04331 0.24 -0.8 695,708 - MPMX19_04331 0.24 +0.1 695,708 - MPMX19_04331 0.24 -0.7 695,708 - MPMX19_04331 0.24 -0.5 695,708 - MPMX19_04331 0.24 -0.7 695,708 - MPMX19_04331 0.24 -2.3 695,708 - MPMX19_04331 0.24 -1.1 695,794 + MPMX19_04331 0.35 +0.7 695,794 + MPMX19_04331 0.35 -1.1 695,794 + MPMX19_04331 0.35 -0.2 695,794 + MPMX19_04331 0.35 -1.6 695,794 + MPMX19_04331 0.35 -0.6 695,795 - MPMX19_04331 0.35 +0.1 695,795 - MPMX19_04331 0.35 -1.6 695,795 - MPMX19_04331 0.35 -1.1 695,836 + MPMX19_04331 0.40 -0.0 695,836 + MPMX19_04331 0.40 +0.4 695,836 + MPMX19_04331 0.40 -0.1 695,836 + MPMX19_04331 0.40 -0.6 695,836 + MPMX19_04331 0.40 -0.9 695,836 + MPMX19_04331 0.40 -2.5 695,836 + MPMX19_04331 0.40 -0.4 695,837 - MPMX19_04331 0.40 +0.7 695,837 - MPMX19_04331 0.40 -0.1 695,878 + MPMX19_04331 0.46 -0.5 695,878 + MPMX19_04331 0.46 +0.4 695,878 + MPMX19_04331 0.46 -0.6 695,878 + MPMX19_04331 0.46 +1.1 695,878 + MPMX19_04331 0.46 -0.1 695,879 - MPMX19_04331 0.46 -0.6 695,879 - MPMX19_04331 0.46 -0.7 695,879 - MPMX19_04331 0.46 -1.0 695,879 - MPMX19_04331 0.46 -1.8 695,905 + MPMX19_04331 0.49 -0.5 695,905 + MPMX19_04331 0.49 -2.4 695,905 + MPMX19_04331 0.49 -0.0 695,905 + MPMX19_04331 0.49 -2.8 695,905 + MPMX19_04331 0.49 -0.5 695,905 + MPMX19_04331 0.49 +0.2 695,905 + MPMX19_04331 0.49 +0.3 695,905 + MPMX19_04331 0.49 -1.9 695,906 - MPMX19_04331 0.49 +1.1 695,906 - MPMX19_04331 0.49 +0.2 695,906 - MPMX19_04331 0.49 +0.2 695,906 - MPMX19_04331 0.49 -0.5 695,906 - MPMX19_04331 0.49 +1.3 695,962 + MPMX19_04331 0.57 -0.6 695,962 + MPMX19_04331 0.57 -0.3 695,962 + MPMX19_04331 0.57 -1.5 695,962 + MPMX19_04331 0.57 +0.2 695,962 + MPMX19_04331 0.57 -0.6 695,962 + MPMX19_04331 0.57 -1.0 695,962 + MPMX19_04331 0.57 -0.8 695,962 + MPMX19_04331 0.57 -1.9 695,962 + MPMX19_04331 0.57 -0.6 695,962 + MPMX19_04331 0.57 -0.6 695,962 + MPMX19_04331 0.57 +0.8 695,962 + MPMX19_04331 0.57 +0.8 695,963 - MPMX19_04331 0.57 -0.1 695,963 - MPMX19_04331 0.57 +0.9 695,963 - MPMX19_04331 0.57 +0.0 695,963 - MPMX19_04331 0.57 -0.3 695,963 - MPMX19_04331 0.57 -0.3 695,963 - MPMX19_04331 0.57 +0.2 695,963 - MPMX19_04331 0.57 +0.5 696,085 + MPMX19_04331 0.72 -1.4 696,085 + MPMX19_04331 0.72 -1.1 696,086 - MPMX19_04331 0.73 +0.1 696,115 + MPMX19_04331 0.76 -1.0 696,115 + MPMX19_04331 0.76 +0.2 696,115 + MPMX19_04331 0.76 -1.6 696,115 + MPMX19_04331 0.76 -1.5 696,115 + MPMX19_04331 0.76 -0.5 696,116 - MPMX19_04331 0.76 -0.8 696,116 - MPMX19_04331 0.76 -0.3 696,116 - MPMX19_04331 0.76 +0.4 696,117 + MPMX19_04331 0.77 -1.3 696,117 + MPMX19_04331 0.77 +0.8 696,117 + MPMX19_04331 0.77 -1.6 696,117 + MPMX19_04331 0.77 -0.1 696,117 + MPMX19_04331 0.77 +0.1 696,117 + MPMX19_04331 0.77 -1.2 696,117 + MPMX19_04331 0.77 -0.9 696,117 + MPMX19_04331 0.77 -1.2 696,117 + MPMX19_04331 0.77 -0.2 696,117 + MPMX19_04331 0.77 +0.0 696,117 + MPMX19_04331 0.77 -1.6 696,117 + MPMX19_04331 0.77 -0.6 696,118 - MPMX19_04331 0.77 +0.2 696,118 - MPMX19_04331 0.77 -1.6 696,118 - MPMX19_04331 0.77 -0.3 696,118 - MPMX19_04331 0.77 -0.1 696,118 - MPMX19_04331 0.77 -1.1 696,118 - MPMX19_04331 0.77 +0.1 696,130 + MPMX19_04331 0.78 +0.9 696,334 - +0.5 696,362 + -0.5 696,362 + +0.5 696,362 + -0.8 696,362 + -0.9 696,363 - +0.7 696,363 - -0.1 696,363 - +0.7 696,363 - -1.1 696,418 + +1.3 696,419 - -0.6 696,419 - -1.1 696,419 - -0.3 696,419 - +0.9 696,722 + MPMX19_04332 0.51 +0.4 696,722 + MPMX19_04332 0.51 +0.3 696,722 + MPMX19_04332 0.51 +0.7 696,722 + MPMX19_04332 0.51 +0.5 696,722 + MPMX19_04332 0.51 -1.0 696,722 + MPMX19_04332 0.51 -1.3 696,722 + MPMX19_04332 0.51 +0.2 696,722 + MPMX19_04332 0.51 +0.4 696,722 + MPMX19_04332 0.51 -0.6 696,722 + MPMX19_04332 0.51 +0.0 696,722 + MPMX19_04332 0.51 -0.6 696,722 + MPMX19_04332 0.51 -0.3 696,723 - MPMX19_04332 0.51 +1.2 696,723 - MPMX19_04332 0.51 -2.2 696,723 - MPMX19_04332 0.51 -0.1 696,723 - MPMX19_04332 0.51 +0.8 696,723 - MPMX19_04332 0.51 +0.4 696,723 - MPMX19_04332 0.51 -0.1 696,723 - MPMX19_04332 0.51 +1.5 696,723 - MPMX19_04332 0.51 -0.9 696,723 - MPMX19_04332 0.51 +1.7 696,723 - MPMX19_04332 0.51 -0.0 696,723 - MPMX19_04332 0.51 +1.4 696,833 + MPMX19_04332 0.71 -1.5 697,183 + -1.6 697,184 - -0.9 697,184 - -0.2 697,184 - +0.6 697,184 - +1.7 697,184 - +0.8 697,258 + +0.7 697,258 + -0.3 697,259 - -1.8 697,259 - -0.6 697,259 - +1.7 697,259 - -0.4 697,297 - +0.3
Or see this region's nucleotide sequence