Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03506

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03505 and MPMX19_03506 are separated by 43 nucleotidesMPMX19_03506 and MPMX19_03507 overlap by 4 nucleotidesMPMX19_03507 and MPMX19_03508 overlap by 4 nucleotides MPMX19_03505: MPMX19_03505 - putative formate transporter 1, at 922,355 to 923,263 _03505 MPMX19_03506: MPMX19_03506 - Hydrogenase 3 maturation protease, at 923,307 to 923,765 _03506 MPMX19_03507: MPMX19_03507 - hypothetical protein, at 923,762 to 924,229 _03507 MPMX19_03508: MPMX19_03508 - Formate hydrogenlyase subunit 7, at 924,226 to 925,029 _03508 Position (kb) 923 924Strain fitness (log2 ratio) -2 -1 0 1 2at 922.333 kb on - strandat 922.333 kb on - strandat 922.333 kb on - strandat 922.333 kb on - strandat 922.437 kb on + strandat 922.438 kb on - strandat 922.438 kb on - strandat 922.438 kb on - strandat 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.585 kb on - strand, within MPMX19_03505at 922.585 kb on - strand, within MPMX19_03505at 922.585 kb on - strand, within MPMX19_03505at 922.602 kb on + strand, within MPMX19_03505at 922.602 kb on + strand, within MPMX19_03505at 922.602 kb on + strand, within MPMX19_03505at 922.603 kb on - strand, within MPMX19_03505at 922.698 kb on + strand, within MPMX19_03505at 922.709 kb on + strand, within MPMX19_03505at 922.846 kb on + strand, within MPMX19_03505at 922.846 kb on + strand, within MPMX19_03505at 922.847 kb on - strand, within MPMX19_03505at 922.847 kb on - strand, within MPMX19_03505at 922.847 kb on - strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 923.214 kb on + strandat 923.214 kb on + strandat 923.215 kb on - strandat 923.215 kb on - strandat 923.215 kb on - strandat 923.215 kb on - strandat 923.324 kb on - strandat 923.324 kb on - strandat 923.751 kb on + strandat 923.752 kb on - strandat 923.752 kb on - strandat 923.787 kb on + strandat 923.787 kb on + strandat 923.787 kb on + strandat 923.788 kb on - strandat 923.788 kb on - strandat 923.788 kb on - strandat 924.078 kb on + strand, within MPMX19_03507at 924.078 kb on + strand, within MPMX19_03507at 924.079 kb on - strand, within MPMX19_03507at 924.079 kb on - strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.082 kb on - strand, within MPMX19_03507at 924.082 kb on - strand, within MPMX19_03507at 924.082 kb on - strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.216 kb on - strandat 924.216 kb on - strandat 924.216 kb on - strandat 924.216 kb on - strandat 924.464 kb on + strand, within MPMX19_03508at 924.464 kb on + strand, within MPMX19_03508at 924.464 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.653 kb on + strand, within MPMX19_03508at 924.653 kb on + strand, within MPMX19_03508at 924.654 kb on - strand, within MPMX19_03508at 924.654 kb on - strand, within MPMX19_03508at 924.654 kb on - strand, within MPMX19_03508at 924.654 kb on - strand, within MPMX19_03508at 924.678 kb on + strand, within MPMX19_03508at 924.679 kb on - strand, within MPMX19_03508at 924.695 kb on + strand, within MPMX19_03508at 924.695 kb on + strand, within MPMX19_03508at 924.696 kb on - strand, within MPMX19_03508at 924.731 kb on + strand, within MPMX19_03508at 924.731 kb on + strand, within MPMX19_03508at 924.732 kb on - strand, within MPMX19_03508

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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922,333 - -1.3
922,333 - -1.2
922,333 - -0.8
922,333 - -2.1
922,437 + +0.1
922,438 - -0.8
922,438 - -1.0
922,438 - -0.4
922,449 + MPMX19_03505 0.10 +2.4
922,449 + MPMX19_03505 0.10 -0.6
922,449 + MPMX19_03505 0.10 -0.7
922,449 + MPMX19_03505 0.10 +0.1
922,449 + MPMX19_03505 0.10 -1.8
922,449 + MPMX19_03505 0.10 -0.2
922,450 - MPMX19_03505 0.10 +0.5
922,450 - MPMX19_03505 0.10 -0.4
922,450 - MPMX19_03505 0.10 -0.5
922,450 - MPMX19_03505 0.10 +0.1
922,450 - MPMX19_03505 0.10 -1.9
922,450 - MPMX19_03505 0.10 +0.8
922,450 - MPMX19_03505 0.10 -1.6
922,450 - MPMX19_03505 0.10 +0.9
922,450 - MPMX19_03505 0.10 +1.3
922,450 - MPMX19_03505 0.10 -0.9
922,450 - MPMX19_03505 0.10 -0.5
922,450 - MPMX19_03505 0.10 -0.5
922,584 + MPMX19_03505 0.25 +0.7
922,584 + MPMX19_03505 0.25 +0.1
922,584 + MPMX19_03505 0.25 -0.2
922,584 + MPMX19_03505 0.25 -0.7
922,584 + MPMX19_03505 0.25 -1.3
922,584 + MPMX19_03505 0.25 -1.7
922,584 + MPMX19_03505 0.25 -1.9
922,584 + MPMX19_03505 0.25 -0.3
922,585 - MPMX19_03505 0.25 +0.4
922,585 - MPMX19_03505 0.25 -0.7
922,585 - MPMX19_03505 0.25 -0.3
922,602 + MPMX19_03505 0.27 -0.2
922,602 + MPMX19_03505 0.27 -1.1
922,602 + MPMX19_03505 0.27 +0.1
922,603 - MPMX19_03505 0.27 -1.5
922,698 + MPMX19_03505 0.38 -0.7
922,709 + MPMX19_03505 0.39 -1.0
922,846 + MPMX19_03505 0.54 +0.9
922,846 + MPMX19_03505 0.54 +0.7
922,847 - MPMX19_03505 0.54 +0.5
922,847 - MPMX19_03505 0.54 -0.9
922,847 - MPMX19_03505 0.54 +1.0
922,848 + MPMX19_03505 0.54 -0.2
922,848 + MPMX19_03505 0.54 +0.5
922,848 + MPMX19_03505 0.54 -0.1
922,848 + MPMX19_03505 0.54 +0.3
922,848 + MPMX19_03505 0.54 +0.8
922,848 + MPMX19_03505 0.54 -1.8
922,848 + MPMX19_03505 0.54 -0.2
922,848 + MPMX19_03505 0.54 +0.8
922,848 + MPMX19_03505 0.54 -1.3
922,848 + MPMX19_03505 0.54 -0.8
922,848 + MPMX19_03505 0.54 -0.7
922,848 + MPMX19_03505 0.54 -0.5
922,848 + MPMX19_03505 0.54 +0.5
922,848 + MPMX19_03505 0.54 +0.4
922,848 + MPMX19_03505 0.54 -2.1
922,848 + MPMX19_03505 0.54 -1.1
922,848 + MPMX19_03505 0.54 +0.8
922,849 - MPMX19_03505 0.54 -0.9
922,849 - MPMX19_03505 0.54 +1.1
922,849 - MPMX19_03505 0.54 +0.3
922,849 - MPMX19_03505 0.54 -1.5
922,849 - MPMX19_03505 0.54 +0.1
922,849 - MPMX19_03505 0.54 -1.2
922,849 - MPMX19_03505 0.54 -0.2
922,849 - MPMX19_03505 0.54 +0.3
922,849 - MPMX19_03505 0.54 +0.1
922,849 - MPMX19_03505 0.54 +0.2
922,849 - MPMX19_03505 0.54 +1.0
922,849 - MPMX19_03505 0.54 -2.6
922,849 - MPMX19_03505 0.54 +0.7
922,849 - MPMX19_03505 0.54 -0.6
922,849 - MPMX19_03505 0.54 -1.8
922,849 - MPMX19_03505 0.54 -0.2
922,849 - MPMX19_03505 0.54 +0.6
922,849 - MPMX19_03505 0.54 -1.3
922,849 - MPMX19_03505 0.54 -0.5
922,849 - MPMX19_03505 0.54 +0.3
922,849 - MPMX19_03505 0.54 +0.2
922,849 - MPMX19_03505 0.54 +0.4
922,849 - MPMX19_03505 0.54 -0.5
922,849 - MPMX19_03505 0.54 -1.2
923,214 + +1.3
923,214 + -0.1
923,215 - -0.5
923,215 - +0.4
923,215 - +0.0
923,215 - +0.4
923,324 - +0.7
923,324 - -0.8
923,751 + -1.5
923,752 - -0.1
923,752 - +0.8
923,787 + -1.0
923,787 + -1.4
923,787 + -1.9
923,788 - +0.7
923,788 - -0.7
923,788 - -0.3
924,078 + MPMX19_03507 0.68 +0.1
924,078 + MPMX19_03507 0.68 +0.5
924,079 - MPMX19_03507 0.68 -0.9
924,079 - MPMX19_03507 0.68 -0.1
924,081 + MPMX19_03507 0.68 -0.1
924,081 + MPMX19_03507 0.68 -0.5
924,081 + MPMX19_03507 0.68 -0.3
924,081 + MPMX19_03507 0.68 +0.1
924,082 - MPMX19_03507 0.68 +0.1
924,082 - MPMX19_03507 0.68 -1.7
924,082 - MPMX19_03507 0.68 -0.2
924,147 + MPMX19_03507 0.82 -1.1
924,147 + MPMX19_03507 0.82 -1.9
924,147 + MPMX19_03507 0.82 -1.2
924,147 + MPMX19_03507 0.82 -0.7
924,147 + MPMX19_03507 0.82 +0.7
924,147 + MPMX19_03507 0.82 -1.1
924,148 - MPMX19_03507 0.82 -0.2
924,148 - MPMX19_03507 0.82 +0.3
924,148 - MPMX19_03507 0.82 -1.4
924,148 - MPMX19_03507 0.82 +0.1
924,216 - -0.9
924,216 - -0.7
924,216 - +0.1
924,216 - -0.4
924,464 + MPMX19_03508 0.30 -0.3
924,464 + MPMX19_03508 0.30 -0.6
924,464 + MPMX19_03508 0.30 +0.1
924,608 + MPMX19_03508 0.48 +0.3
924,608 + MPMX19_03508 0.48 -0.4
924,608 + MPMX19_03508 0.48 +1.5
924,608 + MPMX19_03508 0.48 +0.6
924,608 + MPMX19_03508 0.48 +0.0
924,608 + MPMX19_03508 0.48 -1.1
924,608 + MPMX19_03508 0.48 +0.7
924,609 - MPMX19_03508 0.48 -1.1
924,609 - MPMX19_03508 0.48 -0.1
924,609 - MPMX19_03508 0.48 +0.3
924,609 - MPMX19_03508 0.48 -0.8
924,609 - MPMX19_03508 0.48 -0.6
924,609 - MPMX19_03508 0.48 -0.4
924,609 - MPMX19_03508 0.48 -0.6
924,609 - MPMX19_03508 0.48 -0.6
924,609 - MPMX19_03508 0.48 -0.1
924,609 - MPMX19_03508 0.48 -1.6
924,609 - MPMX19_03508 0.48 -0.3
924,609 - MPMX19_03508 0.48 +0.3
924,609 - MPMX19_03508 0.48 +1.2
924,653 + MPMX19_03508 0.53 +0.0
924,653 + MPMX19_03508 0.53 +0.4
924,654 - MPMX19_03508 0.53 +1.8
924,654 - MPMX19_03508 0.53 -0.6
924,654 - MPMX19_03508 0.53 +1.1
924,654 - MPMX19_03508 0.53 -1.3
924,678 + MPMX19_03508 0.56 -0.5
924,679 - MPMX19_03508 0.56 -0.5
924,695 + MPMX19_03508 0.58 +0.3
924,695 + MPMX19_03508 0.58 -0.3
924,696 - MPMX19_03508 0.58 -1.1
924,731 + MPMX19_03508 0.63 +0.5
924,731 + MPMX19_03508 0.63 +0.2
924,732 - MPMX19_03508 0.63 -2.5

Or see this region's nucleotide sequence