Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03452

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03451 and MPMX19_03452 are separated by 34 nucleotidesMPMX19_03452 and MPMX19_03453 overlap by 1 nucleotides MPMX19_03451: MPMX19_03451 - hypothetical protein, at 846,888 to 849,251 _03451 MPMX19_03452: MPMX19_03452 - Putative aliphatic sulfonates transport permease protein SsuC, at 849,286 to 850,029 _03452 MPMX19_03453: MPMX19_03453 - Putative aliphatic sulfonates-binding protein, at 850,029 to 851,048 _03453 Position (kb) 849 850 851Strain fitness (log2 ratio) -2 -1 0 1 2at 848.365 kb on + strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.369 kb on - strand, within MPMX19_03451at 848.369 kb on - strand, within MPMX19_03451at 848.369 kb on - strand, within MPMX19_03451at 848.369 kb on - strand, within MPMX19_03451at 848.369 kb on - strand, within MPMX19_03451at 848.494 kb on + strand, within MPMX19_03451at 848.494 kb on + strand, within MPMX19_03451at 848.495 kb on - strand, within MPMX19_03451at 848.495 kb on - strand, within MPMX19_03451at 848.495 kb on - strand, within MPMX19_03451at 848.495 kb on - strand, within MPMX19_03451at 848.861 kb on - strand, within MPMX19_03451at 848.861 kb on - strand, within MPMX19_03451at 848.896 kb on + strand, within MPMX19_03451at 848.986 kb on + strand, within MPMX19_03451at 848.986 kb on + strand, within MPMX19_03451at 848.986 kb on + strand, within MPMX19_03451at 848.986 kb on + strand, within MPMX19_03451at 848.986 kb on + strand, within MPMX19_03451at 848.987 kb on - strand, within MPMX19_03451at 848.987 kb on - strand, within MPMX19_03451at 848.987 kb on - strand, within MPMX19_03451at 848.987 kb on - strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.280 kb on - strandat 849.280 kb on - strandat 849.540 kb on - strand, within MPMX19_03452at 849.540 kb on - strand, within MPMX19_03452at 849.540 kb on - strand, within MPMX19_03452at 849.540 kb on - strand, within MPMX19_03452at 849.837 kb on + strand, within MPMX19_03452at 849.837 kb on + strand, within MPMX19_03452at 849.837 kb on + strand, within MPMX19_03452at 849.838 kb on - strand, within MPMX19_03452at 849.838 kb on - strand, within MPMX19_03452at 849.948 kb on - strand, within MPMX19_03452at 849.948 kb on - strand, within MPMX19_03452at 849.948 kb on - strand, within MPMX19_03452at 850.013 kb on + strandat 850.052 kb on - strandat 850.052 kb on - strandat 850.052 kb on - strandat 850.052 kb on - strandat 850.052 kb on - strandat 850.052 kb on - strandat 850.221 kb on - strand, within MPMX19_03453at 850.353 kb on - strand, within MPMX19_03453at 850.388 kb on - strand, within MPMX19_03453at 850.388 kb on - strand, within MPMX19_03453at 850.388 kb on - strand, within MPMX19_03453at 850.709 kb on - strand, within MPMX19_03453at 850.709 kb on - strand, within MPMX19_03453at 850.760 kb on - strand, within MPMX19_03453at 850.760 kb on - strand, within MPMX19_03453at 850.779 kb on - strand, within MPMX19_03453at 850.779 kb on - strand, within MPMX19_03453at 850.874 kb on - strand, within MPMX19_03453at 850.874 kb on - strand, within MPMX19_03453at 850.874 kb on - strand, within MPMX19_03453at 850.874 kb on - strand, within MPMX19_03453at 851.008 kb on + strandat 851.008 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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848,365 + MPMX19_03451 0.62 -0.3
848,365 + MPMX19_03451 0.62 -1.1
848,365 + MPMX19_03451 0.62 +1.1
848,365 + MPMX19_03451 0.62 -0.6
848,365 + MPMX19_03451 0.62 -0.8
848,365 + MPMX19_03451 0.62 +1.3
848,368 + MPMX19_03451 0.63 +0.5
848,368 + MPMX19_03451 0.63 +0.4
848,368 + MPMX19_03451 0.63 -1.2
848,368 + MPMX19_03451 0.63 -0.1
848,368 + MPMX19_03451 0.63 -0.3
848,368 + MPMX19_03451 0.63 -0.2
848,368 + MPMX19_03451 0.63 -0.8
848,368 + MPMX19_03451 0.63 -1.1
848,368 + MPMX19_03451 0.63 -0.3
848,368 + MPMX19_03451 0.63 +0.1
848,368 + MPMX19_03451 0.63 +0.7
848,368 + MPMX19_03451 0.63 +0.8
848,369 - MPMX19_03451 0.63 -2.6
848,369 - MPMX19_03451 0.63 -0.9
848,369 - MPMX19_03451 0.63 -0.9
848,369 - MPMX19_03451 0.63 -0.6
848,369 - MPMX19_03451 0.63 +0.3
848,494 + MPMX19_03451 0.68 -0.2
848,494 + MPMX19_03451 0.68 +0.5
848,495 - MPMX19_03451 0.68 +0.2
848,495 - MPMX19_03451 0.68 -0.8
848,495 - MPMX19_03451 0.68 -1.1
848,495 - MPMX19_03451 0.68 +0.7
848,861 - MPMX19_03451 0.83 +0.2
848,861 - MPMX19_03451 0.83 -1.1
848,896 + MPMX19_03451 0.85 -0.2
848,986 + MPMX19_03451 0.89 +0.5
848,986 + MPMX19_03451 0.89 -1.3
848,986 + MPMX19_03451 0.89 +0.6
848,986 + MPMX19_03451 0.89 +1.5
848,986 + MPMX19_03451 0.89 -1.1
848,987 - MPMX19_03451 0.89 -0.5
848,987 - MPMX19_03451 0.89 -0.5
848,987 - MPMX19_03451 0.89 +0.5
848,987 - MPMX19_03451 0.89 +1.0
849,001 + MPMX19_03451 0.89 -0.9
849,001 + MPMX19_03451 0.89 -0.7
849,001 + MPMX19_03451 0.89 -0.5
849,001 + MPMX19_03451 0.89 +0.0
849,001 + MPMX19_03451 0.89 +0.8
849,001 + MPMX19_03451 0.89 -0.5
849,001 + MPMX19_03451 0.89 +1.2
849,001 + MPMX19_03451 0.89 -1.5
849,001 + MPMX19_03451 0.89 -1.6
849,001 + MPMX19_03451 0.89 -0.5
849,001 + MPMX19_03451 0.89 +1.3
849,001 + MPMX19_03451 0.89 +0.9
849,001 + MPMX19_03451 0.89 +0.4
849,001 + MPMX19_03451 0.89 +0.4
849,001 + MPMX19_03451 0.89 -0.9
849,001 + MPMX19_03451 0.89 -0.8
849,001 + MPMX19_03451 0.89 +0.8
849,002 - MPMX19_03451 0.89 +0.2
849,002 - MPMX19_03451 0.89 +0.5
849,002 - MPMX19_03451 0.89 -0.2
849,002 - MPMX19_03451 0.89 +0.5
849,002 - MPMX19_03451 0.89 -0.5
849,002 - MPMX19_03451 0.89 -0.3
849,002 - MPMX19_03451 0.89 +0.4
849,002 - MPMX19_03451 0.89 -0.9
849,002 - MPMX19_03451 0.89 -0.5
849,002 - MPMX19_03451 0.89 +0.1
849,002 - MPMX19_03451 0.89 +0.2
849,002 - MPMX19_03451 0.89 -0.7
849,002 - MPMX19_03451 0.89 -0.3
849,002 - MPMX19_03451 0.89 +0.4
849,002 - MPMX19_03451 0.89 +0.9
849,002 - MPMX19_03451 0.89 -0.1
849,002 - MPMX19_03451 0.89 +0.9
849,002 - MPMX19_03451 0.89 -0.5
849,002 - MPMX19_03451 0.89 -0.5
849,280 - -0.3
849,280 - +0.5
849,540 - MPMX19_03452 0.34 -1.1
849,540 - MPMX19_03452 0.34 -2.2
849,540 - MPMX19_03452 0.34 +0.3
849,540 - MPMX19_03452 0.34 -2.1
849,837 + MPMX19_03452 0.74 -0.6
849,837 + MPMX19_03452 0.74 -1.9
849,837 + MPMX19_03452 0.74 -0.3
849,838 - MPMX19_03452 0.74 -0.4
849,838 - MPMX19_03452 0.74 +1.1
849,948 - MPMX19_03452 0.89 -0.3
849,948 - MPMX19_03452 0.89 -1.5
849,948 - MPMX19_03452 0.89 +0.3
850,013 + -0.3
850,052 - +0.3
850,052 - +0.1
850,052 - +0.1
850,052 - -0.3
850,052 - -1.0
850,052 - -1.0
850,221 - MPMX19_03453 0.19 +0.4
850,353 - MPMX19_03453 0.32 -1.3
850,388 - MPMX19_03453 0.35 +0.5
850,388 - MPMX19_03453 0.35 -1.1
850,388 - MPMX19_03453 0.35 -0.6
850,709 - MPMX19_03453 0.67 -1.6
850,709 - MPMX19_03453 0.67 -1.7
850,760 - MPMX19_03453 0.72 -0.3
850,760 - MPMX19_03453 0.72 -0.4
850,779 - MPMX19_03453 0.74 +1.3
850,779 - MPMX19_03453 0.74 +0.2
850,874 - MPMX19_03453 0.83 +0.4
850,874 - MPMX19_03453 0.83 -0.9
850,874 - MPMX19_03453 0.83 -0.7
850,874 - MPMX19_03453 0.83 -1.3
851,008 + -0.7
851,008 + +1.9

Or see this region's nucleotide sequence