Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03313 and MPMX19_03314 are separated by 92 nucleotides MPMX19_03314 and MPMX19_03315 are separated by 147 nucleotides MPMX19_03315 and MPMX19_03316 are separated by 39 nucleotides
MPMX19_03313: MPMX19_03313 - Ureidoglycolate lyase, at 660,966 to 661,811
_03313
MPMX19_03314: MPMX19_03314 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 661,904 to 662,647
_03314
MPMX19_03315: MPMX19_03315 - Transcriptional regulator KdgR, at 662,795 to 663,610
_03315
MPMX19_03316: MPMX19_03316 - hypothetical protein, at 663,650 to 664,879
_03316
Position (kb) 662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 661.811 kb on + strand at 661.811 kb on + strand at 661.811 kb on + strand at 661.812 kb on - strand at 661.812 kb on - strand at 661.812 kb on - strand at 661.812 kb on - strand at 661.909 kb on + strand at 661.910 kb on - strand at 661.910 kb on - strand at 661.977 kb on + strand at 661.978 kb on - strand at 661.978 kb on - strand at 662.038 kb on + strand, within MPMX19_03314 at 662.061 kb on + strand, within MPMX19_03314 at 662.062 kb on - strand, within MPMX19_03314 at 662.151 kb on + strand, within MPMX19_03314 at 662.151 kb on + strand, within MPMX19_03314 at 662.151 kb on + strand, within MPMX19_03314 at 662.151 kb on + strand, within MPMX19_03314 at 662.151 kb on + strand, within MPMX19_03314 at 662.152 kb on - strand, within MPMX19_03314 at 662.152 kb on - strand, within MPMX19_03314 at 662.152 kb on - strand, within MPMX19_03314 at 662.205 kb on + strand, within MPMX19_03314 at 662.205 kb on + strand, within MPMX19_03314 at 662.316 kb on + strand, within MPMX19_03314 at 662.317 kb on - strand, within MPMX19_03314 at 662.317 kb on - strand, within MPMX19_03314 at 662.394 kb on + strand, within MPMX19_03314 at 662.394 kb on + strand, within MPMX19_03314 at 662.395 kb on - strand, within MPMX19_03314 at 662.395 kb on - strand, within MPMX19_03314 at 662.395 kb on - strand, within MPMX19_03314 at 662.821 kb on + strand at 662.822 kb on - strand at 662.892 kb on + strand, within MPMX19_03315 at 662.892 kb on + strand, within MPMX19_03315 at 663.075 kb on + strand, within MPMX19_03315 at 663.075 kb on + strand, within MPMX19_03315 at 663.075 kb on + strand, within MPMX19_03315 at 663.075 kb on + strand, within MPMX19_03315 at 663.076 kb on - strand, within MPMX19_03315 at 663.076 kb on - strand, within MPMX19_03315 at 663.076 kb on - strand, within MPMX19_03315 at 663.076 kb on - strand, within MPMX19_03315 at 663.076 kb on - strand, within MPMX19_03315 at 663.249 kb on + strand, within MPMX19_03315 at 663.249 kb on + strand, within MPMX19_03315 at 663.250 kb on - strand, within MPMX19_03315 at 663.250 kb on - strand, within MPMX19_03315 at 663.386 kb on - strand, within MPMX19_03315 at 663.386 kb on - strand, within MPMX19_03315 at 663.386 kb on - strand, within MPMX19_03315 at 663.387 kb on + strand, within MPMX19_03315 at 663.387 kb on + strand, within MPMX19_03315 at 663.388 kb on - strand, within MPMX19_03315 at 663.388 kb on - strand, within MPMX19_03315 at 663.388 kb on - strand, within MPMX19_03315 at 663.647 kb on + strand at 663.652 kb on - strand at 663.807 kb on + strand, within MPMX19_03316 at 663.807 kb on + strand, within MPMX19_03316 at 663.808 kb on - strand, within MPMX19_03316 at 663.822 kb on + strand, within MPMX19_03316 at 663.823 kb on - strand, within MPMX19_03316 at 663.939 kb on + strand, within MPMX19_03316 at 663.940 kb on - strand, within MPMX19_03316 at 663.940 kb on - strand, within MPMX19_03316 at 663.940 kb on - strand, within MPMX19_03316 at 663.940 kb on - strand, within MPMX19_03316 at 663.978 kb on + strand, within MPMX19_03316 at 663.978 kb on + strand, within MPMX19_03316 at 663.978 kb on + strand, within MPMX19_03316 at 663.979 kb on - strand, within MPMX19_03316 at 663.979 kb on - strand, within MPMX19_03316 at 663.979 kb on - strand, within MPMX19_03316 at 664.101 kb on + strand, within MPMX19_03316 at 664.101 kb on + strand, within MPMX19_03316 at 664.101 kb on + strand, within MPMX19_03316 at 664.101 kb on + strand, within MPMX19_03316 at 664.102 kb on - strand, within MPMX19_03316 at 664.203 kb on + strand, within MPMX19_03316 at 664.204 kb on - strand, within MPMX19_03316 at 664.218 kb on + strand, within MPMX19_03316 at 664.218 kb on + strand, within MPMX19_03316 at 664.218 kb on + strand, within MPMX19_03316 at 664.218 kb on + strand, within MPMX19_03316 at 664.218 kb on + strand, within MPMX19_03316 at 664.219 kb on - strand, within MPMX19_03316 at 664.546 kb on - strand, within MPMX19_03316
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 661,811 + +0.7 661,811 + +0.3 661,811 + -0.6 661,812 - -0.6 661,812 - -0.9 661,812 - -0.8 661,812 - +0.0 661,909 + -1.0 661,910 - +0.5 661,910 - -0.5 661,977 + -1.3 661,978 - -0.9 661,978 - +1.1 662,038 + MPMX19_03314 0.18 -1.0 662,061 + MPMX19_03314 0.21 -0.3 662,062 - MPMX19_03314 0.21 -1.1 662,151 + MPMX19_03314 0.33 -1.3 662,151 + MPMX19_03314 0.33 -0.0 662,151 + MPMX19_03314 0.33 -1.1 662,151 + MPMX19_03314 0.33 +1.5 662,151 + MPMX19_03314 0.33 +3.1 662,152 - MPMX19_03314 0.33 -0.5 662,152 - MPMX19_03314 0.33 -1.9 662,152 - MPMX19_03314 0.33 -0.3 662,205 + MPMX19_03314 0.40 -2.5 662,205 + MPMX19_03314 0.40 +1.0 662,316 + MPMX19_03314 0.55 -0.5 662,317 - MPMX19_03314 0.56 -0.1 662,317 - MPMX19_03314 0.56 -0.4 662,394 + MPMX19_03314 0.66 -0.8 662,394 + MPMX19_03314 0.66 +0.0 662,395 - MPMX19_03314 0.66 -0.7 662,395 - MPMX19_03314 0.66 -0.1 662,395 - MPMX19_03314 0.66 +1.3 662,821 + -1.0 662,822 - +0.5 662,892 + MPMX19_03315 0.12 -1.3 662,892 + MPMX19_03315 0.12 -0.3 663,075 + MPMX19_03315 0.34 -0.6 663,075 + MPMX19_03315 0.34 -1.0 663,075 + MPMX19_03315 0.34 +0.2 663,075 + MPMX19_03315 0.34 -1.5 663,076 - MPMX19_03315 0.34 -1.1 663,076 - MPMX19_03315 0.34 -1.0 663,076 - MPMX19_03315 0.34 +0.2 663,076 - MPMX19_03315 0.34 -1.6 663,076 - MPMX19_03315 0.34 -1.2 663,249 + MPMX19_03315 0.56 -0.9 663,249 + MPMX19_03315 0.56 +0.2 663,250 - MPMX19_03315 0.56 -0.6 663,250 - MPMX19_03315 0.56 -0.8 663,386 - MPMX19_03315 0.72 -0.8 663,386 - MPMX19_03315 0.72 -0.2 663,386 - MPMX19_03315 0.72 -1.1 663,387 + MPMX19_03315 0.73 +0.3 663,387 + MPMX19_03315 0.73 +0.5 663,388 - MPMX19_03315 0.73 +0.1 663,388 - MPMX19_03315 0.73 +0.1 663,388 - MPMX19_03315 0.73 -0.2 663,647 + -0.3 663,652 - +1.0 663,807 + MPMX19_03316 0.13 +0.5 663,807 + MPMX19_03316 0.13 -0.5 663,808 - MPMX19_03316 0.13 +0.2 663,822 + MPMX19_03316 0.14 +0.4 663,823 - MPMX19_03316 0.14 -1.6 663,939 + MPMX19_03316 0.23 -2.3 663,940 - MPMX19_03316 0.24 -1.3 663,940 - MPMX19_03316 0.24 +0.5 663,940 - MPMX19_03316 0.24 -0.6 663,940 - MPMX19_03316 0.24 -0.1 663,978 + MPMX19_03316 0.27 -0.9 663,978 + MPMX19_03316 0.27 +0.4 663,978 + MPMX19_03316 0.27 -0.3 663,979 - MPMX19_03316 0.27 -0.3 663,979 - MPMX19_03316 0.27 -0.5 663,979 - MPMX19_03316 0.27 +2.1 664,101 + MPMX19_03316 0.37 -0.5 664,101 + MPMX19_03316 0.37 -0.3 664,101 + MPMX19_03316 0.37 -0.6 664,101 + MPMX19_03316 0.37 +0.0 664,102 - MPMX19_03316 0.37 -1.1 664,203 + MPMX19_03316 0.45 +1.0 664,204 - MPMX19_03316 0.45 -1.3 664,218 + MPMX19_03316 0.46 -1.2 664,218 + MPMX19_03316 0.46 -1.2 664,218 + MPMX19_03316 0.46 -1.5 664,218 + MPMX19_03316 0.46 +1.2 664,218 + MPMX19_03316 0.46 +0.0 664,219 - MPMX19_03316 0.46 -0.5 664,546 - MPMX19_03316 0.73 -2.2
Or see this region's nucleotide sequence