Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03269

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03268 and MPMX19_03269 are separated by 182 nucleotidesMPMX19_03269 and MPMX19_03270 are separated by 63 nucleotides MPMX19_03268: MPMX19_03268 - HTH-type transcriptional regulator DegA, at 611,670 to 612,731 _03268 MPMX19_03269: MPMX19_03269 - hypothetical protein, at 612,914 to 614,197 _03269 MPMX19_03270: MPMX19_03270 - Lactose transport system permease protein LacF, at 614,261 to 615,292 _03270 Position (kb) 612 613 614 615Strain fitness (log2 ratio) -2 -1 0 1 2at 611.929 kb on + strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 612.005 kb on - strand, within MPMX19_03268at 612.232 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.359 kb on - strand, within MPMX19_03268at 612.359 kb on - strand, within MPMX19_03268at 612.409 kb on + strand, within MPMX19_03268at 612.410 kb on - strand, within MPMX19_03268at 612.410 kb on - strand, within MPMX19_03268at 612.410 kb on - strand, within MPMX19_03268at 613.010 kb on + strandat 613.011 kb on - strandat 613.199 kb on + strand, within MPMX19_03269at 613.199 kb on + strand, within MPMX19_03269at 613.200 kb on - strand, within MPMX19_03269at 613.239 kb on - strand, within MPMX19_03269at 613.310 kb on + strand, within MPMX19_03269at 613.310 kb on + strand, within MPMX19_03269at 613.310 kb on + strand, within MPMX19_03269at 613.310 kb on + strand, within MPMX19_03269at 613.311 kb on - strand, within MPMX19_03269at 613.311 kb on - strand, within MPMX19_03269at 613.349 kb on + strand, within MPMX19_03269at 613.694 kb on + strand, within MPMX19_03269at 613.694 kb on + strand, within MPMX19_03269at 613.694 kb on + strand, within MPMX19_03269at 613.694 kb on + strand, within MPMX19_03269at 613.695 kb on - strand, within MPMX19_03269at 613.871 kb on + strand, within MPMX19_03269at 613.871 kb on + strand, within MPMX19_03269at 613.872 kb on - strand, within MPMX19_03269at 613.872 kb on - strand, within MPMX19_03269at 613.904 kb on + strand, within MPMX19_03269at 613.904 kb on + strand, within MPMX19_03269at 613.904 kb on + strand, within MPMX19_03269at 613.904 kb on + strand, within MPMX19_03269at 613.904 kb on + strand, within MPMX19_03269at 613.904 kb on + strand, within MPMX19_03269at 613.905 kb on - strand, within MPMX19_03269at 613.905 kb on - strand, within MPMX19_03269at 613.905 kb on - strand, within MPMX19_03269at 613.905 kb on - strand, within MPMX19_03269at 613.905 kb on - strand, within MPMX19_03269at 613.905 kb on - strand, within MPMX19_03269at 613.905 kb on - strand, within MPMX19_03269at 613.961 kb on + strand, within MPMX19_03269at 613.961 kb on + strand, within MPMX19_03269at 613.962 kb on - strand, within MPMX19_03269at 613.962 kb on - strand, within MPMX19_03269at 613.962 kb on - strand, within MPMX19_03269at 613.962 kb on - strand, within MPMX19_03269at 613.962 kb on - strand, within MPMX19_03269at 613.962 kb on - strand, within MPMX19_03269at 614.039 kb on + strand, within MPMX19_03269at 614.138 kb on + strandat 614.138 kb on + strandat 614.139 kb on - strandat 614.139 kb on - strandat 614.139 kb on - strandat 614.269 kb on + strandat 614.269 kb on + strandat 614.270 kb on - strandat 614.414 kb on + strand, within MPMX19_03270at 614.414 kb on + strand, within MPMX19_03270at 614.414 kb on + strand, within MPMX19_03270at 614.414 kb on + strand, within MPMX19_03270at 614.415 kb on - strand, within MPMX19_03270at 614.415 kb on - strand, within MPMX19_03270at 614.415 kb on - strand, within MPMX19_03270at 614.415 kb on - strand, within MPMX19_03270at 614.531 kb on + strand, within MPMX19_03270at 614.531 kb on + strand, within MPMX19_03270at 614.531 kb on + strand, within MPMX19_03270at 614.532 kb on - strand, within MPMX19_03270at 614.532 kb on - strand, within MPMX19_03270at 614.532 kb on - strand, within MPMX19_03270at 614.532 kb on - strand, within MPMX19_03270at 614.532 kb on - strand, within MPMX19_03270at 614.549 kb on + strand, within MPMX19_03270at 614.549 kb on + strand, within MPMX19_03270at 614.550 kb on - strand, within MPMX19_03270at 614.550 kb on - strand, within MPMX19_03270at 614.576 kb on + strand, within MPMX19_03270at 614.576 kb on + strand, within MPMX19_03270at 614.576 kb on + strand, within MPMX19_03270at 614.576 kb on + strand, within MPMX19_03270at 614.576 kb on + strand, within MPMX19_03270at 614.577 kb on - strand, within MPMX19_03270at 614.577 kb on - strand, within MPMX19_03270at 614.577 kb on - strand, within MPMX19_03270at 614.577 kb on - strand, within MPMX19_03270at 614.738 kb on + strand, within MPMX19_03270at 614.738 kb on + strand, within MPMX19_03270at 614.739 kb on - strand, within MPMX19_03270at 614.739 kb on - strand, within MPMX19_03270at 614.739 kb on - strand, within MPMX19_03270at 614.739 kb on - strand, within MPMX19_03270at 614.924 kb on + strand, within MPMX19_03270at 614.924 kb on + strand, within MPMX19_03270at 614.924 kb on + strand, within MPMX19_03270at 614.924 kb on + strand, within MPMX19_03270at 614.924 kb on + strand, within MPMX19_03270at 614.925 kb on - strand, within MPMX19_03270at 614.925 kb on - strand, within MPMX19_03270at 614.925 kb on - strand, within MPMX19_03270at 614.972 kb on + strand, within MPMX19_03270at 614.972 kb on + strand, within MPMX19_03270at 614.973 kb on - strand, within MPMX19_03270at 614.973 kb on - strand, within MPMX19_03270at 614.973 kb on - strand, within MPMX19_03270at 614.973 kb on - strand, within MPMX19_03270at 614.973 kb on - strand, within MPMX19_03270at 615.158 kb on + strand, within MPMX19_03270at 615.158 kb on + strand, within MPMX19_03270at 615.158 kb on + strand, within MPMX19_03270at 615.158 kb on + strand, within MPMX19_03270at 615.158 kb on + strand, within MPMX19_03270at 615.158 kb on + strand, within MPMX19_03270at 615.158 kb on + strand, within MPMX19_03270at 615.158 kb on + strand, within MPMX19_03270at 615.158 kb on + strand, within MPMX19_03270at 615.159 kb on - strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.164 kb on + strand, within MPMX19_03270at 615.165 kb on - strand, within MPMX19_03270at 615.165 kb on - strand, within MPMX19_03270at 615.165 kb on - strand, within MPMX19_03270at 615.165 kb on - strand, within MPMX19_03270at 615.165 kb on - strand, within MPMX19_03270at 615.165 kb on - strand, within MPMX19_03270at 615.165 kb on - strand, within MPMX19_03270at 615.165 kb on - strand, within MPMX19_03270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
remove
611,929 + MPMX19_03268 0.24 -1.4
611,930 - MPMX19_03268 0.24 -0.5
611,930 - MPMX19_03268 0.24 +0.5
611,930 - MPMX19_03268 0.24 +1.5
611,930 - MPMX19_03268 0.24 -0.5
612,005 - MPMX19_03268 0.32 -0.2
612,232 + MPMX19_03268 0.53 -0.5
612,358 + MPMX19_03268 0.65 -2.0
612,358 + MPMX19_03268 0.65 +0.5
612,358 + MPMX19_03268 0.65 -0.0
612,358 + MPMX19_03268 0.65 +0.3
612,359 - MPMX19_03268 0.65 -0.8
612,359 - MPMX19_03268 0.65 +0.9
612,409 + MPMX19_03268 0.70 -0.3
612,410 - MPMX19_03268 0.70 +1.3
612,410 - MPMX19_03268 0.70 -0.8
612,410 - MPMX19_03268 0.70 -0.6
613,010 + -0.5
613,011 - -1.5
613,199 + MPMX19_03269 0.22 +2.0
613,199 + MPMX19_03269 0.22 -1.3
613,200 - MPMX19_03269 0.22 -0.8
613,239 - MPMX19_03269 0.25 +0.2
613,310 + MPMX19_03269 0.31 -0.8
613,310 + MPMX19_03269 0.31 +0.0
613,310 + MPMX19_03269 0.31 -0.8
613,310 + MPMX19_03269 0.31 +0.3
613,311 - MPMX19_03269 0.31 -0.3
613,311 - MPMX19_03269 0.31 -2.5
613,349 + MPMX19_03269 0.34 +0.2
613,694 + MPMX19_03269 0.61 +0.4
613,694 + MPMX19_03269 0.61 +0.5
613,694 + MPMX19_03269 0.61 +0.5
613,694 + MPMX19_03269 0.61 -1.6
613,695 - MPMX19_03269 0.61 -1.1
613,871 + MPMX19_03269 0.75 +0.2
613,871 + MPMX19_03269 0.75 +0.4
613,872 - MPMX19_03269 0.75 -0.8
613,872 - MPMX19_03269 0.75 -0.9
613,904 + MPMX19_03269 0.77 +0.7
613,904 + MPMX19_03269 0.77 +0.3
613,904 + MPMX19_03269 0.77 +1.3
613,904 + MPMX19_03269 0.77 +0.2
613,904 + MPMX19_03269 0.77 +0.1
613,904 + MPMX19_03269 0.77 -1.0
613,905 - MPMX19_03269 0.77 +0.7
613,905 - MPMX19_03269 0.77 -0.3
613,905 - MPMX19_03269 0.77 -0.6
613,905 - MPMX19_03269 0.77 -1.6
613,905 - MPMX19_03269 0.77 +0.4
613,905 - MPMX19_03269 0.77 +1.2
613,905 - MPMX19_03269 0.77 +1.3
613,961 + MPMX19_03269 0.82 -0.0
613,961 + MPMX19_03269 0.82 -0.0
613,962 - MPMX19_03269 0.82 +0.7
613,962 - MPMX19_03269 0.82 +0.2
613,962 - MPMX19_03269 0.82 +0.4
613,962 - MPMX19_03269 0.82 -1.6
613,962 - MPMX19_03269 0.82 +1.4
613,962 - MPMX19_03269 0.82 -0.2
614,039 + MPMX19_03269 0.88 +0.2
614,138 + +1.4
614,138 + +1.0
614,139 - -0.3
614,139 - +0.1
614,139 - -0.3
614,269 + +0.5
614,269 + -0.0
614,270 - -0.4
614,414 + MPMX19_03270 0.15 +0.7
614,414 + MPMX19_03270 0.15 -0.2
614,414 + MPMX19_03270 0.15 +1.0
614,414 + MPMX19_03270 0.15 +0.5
614,415 - MPMX19_03270 0.15 -0.6
614,415 - MPMX19_03270 0.15 -0.9
614,415 - MPMX19_03270 0.15 +0.4
614,415 - MPMX19_03270 0.15 -0.4
614,531 + MPMX19_03270 0.26 -0.0
614,531 + MPMX19_03270 0.26 -0.8
614,531 + MPMX19_03270 0.26 +0.2
614,532 - MPMX19_03270 0.26 +0.8
614,532 - MPMX19_03270 0.26 +1.1
614,532 - MPMX19_03270 0.26 -1.1
614,532 - MPMX19_03270 0.26 +0.1
614,532 - MPMX19_03270 0.26 -0.5
614,549 + MPMX19_03270 0.28 -1.1
614,549 + MPMX19_03270 0.28 +0.7
614,550 - MPMX19_03270 0.28 +1.1
614,550 - MPMX19_03270 0.28 -1.1
614,576 + MPMX19_03270 0.31 +0.2
614,576 + MPMX19_03270 0.31 -0.8
614,576 + MPMX19_03270 0.31 +0.9
614,576 + MPMX19_03270 0.31 +0.7
614,576 + MPMX19_03270 0.31 -0.3
614,577 - MPMX19_03270 0.31 -1.5
614,577 - MPMX19_03270 0.31 -0.4
614,577 - MPMX19_03270 0.31 -1.0
614,577 - MPMX19_03270 0.31 -0.3
614,738 + MPMX19_03270 0.46 -0.0
614,738 + MPMX19_03270 0.46 -0.0
614,739 - MPMX19_03270 0.46 +0.2
614,739 - MPMX19_03270 0.46 +0.1
614,739 - MPMX19_03270 0.46 +0.2
614,739 - MPMX19_03270 0.46 -0.0
614,924 + MPMX19_03270 0.64 -1.8
614,924 + MPMX19_03270 0.64 -0.2
614,924 + MPMX19_03270 0.64 +0.2
614,924 + MPMX19_03270 0.64 +1.2
614,924 + MPMX19_03270 0.64 +0.2
614,925 - MPMX19_03270 0.64 +0.7
614,925 - MPMX19_03270 0.64 -1.4
614,925 - MPMX19_03270 0.64 -0.6
614,972 + MPMX19_03270 0.69 +0.1
614,972 + MPMX19_03270 0.69 -0.9
614,973 - MPMX19_03270 0.69 +0.2
614,973 - MPMX19_03270 0.69 -0.7
614,973 - MPMX19_03270 0.69 -0.3
614,973 - MPMX19_03270 0.69 +0.5
614,973 - MPMX19_03270 0.69 -1.0
615,158 + MPMX19_03270 0.87 -2.7
615,158 + MPMX19_03270 0.87 +0.2
615,158 + MPMX19_03270 0.87 -0.7
615,158 + MPMX19_03270 0.87 +0.2
615,158 + MPMX19_03270 0.87 +0.1
615,158 + MPMX19_03270 0.87 -2.5
615,158 + MPMX19_03270 0.87 -0.5
615,158 + MPMX19_03270 0.87 -0.4
615,158 + MPMX19_03270 0.87 +0.2
615,159 - MPMX19_03270 0.87 +0.0
615,164 + MPMX19_03270 0.88 -1.5
615,164 + MPMX19_03270 0.88 -0.5
615,164 + MPMX19_03270 0.88 -1.6
615,164 + MPMX19_03270 0.88 +1.2
615,164 + MPMX19_03270 0.88 +0.8
615,164 + MPMX19_03270 0.88 -0.7
615,164 + MPMX19_03270 0.88 -0.1
615,164 + MPMX19_03270 0.88 -0.2
615,164 + MPMX19_03270 0.88 -0.7
615,164 + MPMX19_03270 0.88 +0.4
615,164 + MPMX19_03270 0.88 +0.6
615,164 + MPMX19_03270 0.88 -1.5
615,164 + MPMX19_03270 0.88 -1.3
615,164 + MPMX19_03270 0.88 -1.0
615,164 + MPMX19_03270 0.88 +0.5
615,165 - MPMX19_03270 0.88 -1.0
615,165 - MPMX19_03270 0.88 -0.6
615,165 - MPMX19_03270 0.88 -0.5
615,165 - MPMX19_03270 0.88 -1.3
615,165 - MPMX19_03270 0.88 +0.1
615,165 - MPMX19_03270 0.88 +0.3
615,165 - MPMX19_03270 0.88 -0.5
615,165 - MPMX19_03270 0.88 -1.7

Or see this region's nucleotide sequence