Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02871 and MPMX19_02872 are separated by 216 nucleotides MPMX19_02872 and MPMX19_02873 are separated by 163 nucleotides
MPMX19_02871: MPMX19_02871 - HTH-type transcriptional activator RhaR, at 121,114 to 122,070
_02871
MPMX19_02872: MPMX19_02872 - Sigma factor SigB regulation protein RsbQ, at 122,287 to 123,093
_02872
MPMX19_02873: MPMX19_02873 - Acetyl esterase, at 123,257 to 124,261
_02873
Position (kb) 122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 121.352 kb on + strand, within MPMX19_02871 at 121.536 kb on - strand, within MPMX19_02871 at 121.536 kb on - strand, within MPMX19_02871 at 121.583 kb on + strand, within MPMX19_02871 at 121.583 kb on + strand, within MPMX19_02871 at 121.583 kb on + strand, within MPMX19_02871 at 121.583 kb on + strand, within MPMX19_02871 at 121.583 kb on + strand, within MPMX19_02871 at 121.584 kb on - strand, within MPMX19_02871 at 121.584 kb on - strand, within MPMX19_02871 at 121.744 kb on + strand, within MPMX19_02871 at 121.744 kb on + strand, within MPMX19_02871 at 121.744 kb on + strand, within MPMX19_02871 at 121.745 kb on - strand, within MPMX19_02871 at 121.745 kb on - strand, within MPMX19_02871 at 121.745 kb on - strand, within MPMX19_02871 at 121.803 kb on - strand, within MPMX19_02871 at 122.033 kb on + strand at 122.033 kb on + strand at 122.033 kb on + strand at 122.033 kb on + strand at 122.034 kb on - strand at 122.141 kb on + strand at 122.141 kb on + strand at 122.142 kb on - strand at 122.142 kb on - strand at 122.168 kb on + strand at 122.168 kb on + strand at 122.169 kb on - strand at 122.195 kb on + strand at 122.210 kb on + strand at 122.211 kb on - strand at 122.211 kb on - strand at 122.223 kb on - strand at 122.249 kb on + strand at 122.260 kb on + strand at 122.279 kb on + strand at 122.280 kb on - strand at 122.280 kb on - strand at 122.280 kb on - strand at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.633 kb on + strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.634 kb on - strand, within MPMX19_02872 at 122.703 kb on + strand, within MPMX19_02872 at 122.711 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.864 kb on + strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.865 kb on - strand, within MPMX19_02872 at 122.882 kb on + strand, within MPMX19_02872 at 122.882 kb on + strand, within MPMX19_02872 at 122.882 kb on + strand, within MPMX19_02872 at 122.882 kb on + strand, within MPMX19_02872 at 122.882 kb on + strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.883 kb on - strand, within MPMX19_02872 at 122.897 kb on + strand, within MPMX19_02872 at 122.897 kb on + strand, within MPMX19_02872 at 122.897 kb on + strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.898 kb on - strand, within MPMX19_02872 at 122.952 kb on - strand, within MPMX19_02872 at 123.133 kb on - strand at 123.133 kb on - strand at 123.549 kb on + strand, within MPMX19_02873 at 123.549 kb on + strand, within MPMX19_02873 at 123.549 kb on + strand, within MPMX19_02873 at 123.549 kb on + strand, within MPMX19_02873 at 123.549 kb on + strand, within MPMX19_02873 at 123.549 kb on + strand, within MPMX19_02873 at 123.549 kb on + strand, within MPMX19_02873 at 123.550 kb on - strand, within MPMX19_02873 at 123.550 kb on - strand, within MPMX19_02873 at 123.550 kb on - strand, within MPMX19_02873 at 123.550 kb on - strand, within MPMX19_02873 at 123.550 kb on - strand, within MPMX19_02873 at 123.550 kb on - strand, within MPMX19_02873 at 123.562 kb on - strand, within MPMX19_02873 at 123.651 kb on + strand, within MPMX19_02873 at 123.652 kb on - strand, within MPMX19_02873 at 123.862 kb on - strand, within MPMX19_02873 at 123.963 kb on + strand, within MPMX19_02873 at 123.963 kb on + strand, within MPMX19_02873 at 123.963 kb on + strand, within MPMX19_02873 at 123.963 kb on + strand, within MPMX19_02873 at 123.963 kb on + strand, within MPMX19_02873 at 123.964 kb on - strand, within MPMX19_02873 at 123.964 kb on - strand, within MPMX19_02873 at 123.964 kb on - strand, within MPMX19_02873 at 123.964 kb on - strand, within MPMX19_02873
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 121,352 + MPMX19_02871 0.25 -1.3 121,536 - MPMX19_02871 0.44 -0.6 121,536 - MPMX19_02871 0.44 +0.5 121,583 + MPMX19_02871 0.49 -0.9 121,583 + MPMX19_02871 0.49 +0.0 121,583 + MPMX19_02871 0.49 +0.9 121,583 + MPMX19_02871 0.49 +0.0 121,583 + MPMX19_02871 0.49 -0.2 121,584 - MPMX19_02871 0.49 +0.8 121,584 - MPMX19_02871 0.49 -1.3 121,744 + MPMX19_02871 0.66 +0.6 121,744 + MPMX19_02871 0.66 -0.4 121,744 + MPMX19_02871 0.66 +0.9 121,745 - MPMX19_02871 0.66 +0.1 121,745 - MPMX19_02871 0.66 +0.5 121,745 - MPMX19_02871 0.66 +0.0 121,803 - MPMX19_02871 0.72 -0.3 122,033 + -0.4 122,033 + -0.6 122,033 + -0.3 122,033 + +1.1 122,034 - -0.1 122,141 + +1.1 122,141 + -0.3 122,142 - -0.4 122,142 - -0.2 122,168 + +0.6 122,168 + -0.7 122,169 - -0.9 122,195 + +0.4 122,210 + -1.9 122,211 - -0.5 122,211 - +0.6 122,223 - +0.5 122,249 + -0.2 122,260 + -1.7 122,279 + -0.5 122,280 - -0.0 122,280 - +0.2 122,280 - -1.3 122,633 + MPMX19_02872 0.43 +0.2 122,633 + MPMX19_02872 0.43 -0.1 122,633 + MPMX19_02872 0.43 +0.4 122,633 + MPMX19_02872 0.43 -0.1 122,633 + MPMX19_02872 0.43 -0.4 122,633 + MPMX19_02872 0.43 +0.8 122,633 + MPMX19_02872 0.43 -2.6 122,633 + MPMX19_02872 0.43 +0.2 122,633 + MPMX19_02872 0.43 +0.0 122,633 + MPMX19_02872 0.43 -0.4 122,633 + MPMX19_02872 0.43 +0.6 122,633 + MPMX19_02872 0.43 -0.7 122,633 + MPMX19_02872 0.43 -0.8 122,634 - MPMX19_02872 0.43 -0.1 122,634 - MPMX19_02872 0.43 +1.2 122,634 - MPMX19_02872 0.43 -0.5 122,634 - MPMX19_02872 0.43 +0.0 122,634 - MPMX19_02872 0.43 -0.5 122,634 - MPMX19_02872 0.43 +0.6 122,634 - MPMX19_02872 0.43 +0.3 122,634 - MPMX19_02872 0.43 -1.2 122,634 - MPMX19_02872 0.43 -0.8 122,634 - MPMX19_02872 0.43 +0.6 122,634 - MPMX19_02872 0.43 +0.6 122,634 - MPMX19_02872 0.43 -0.4 122,703 + MPMX19_02872 0.52 -0.7 122,711 + MPMX19_02872 0.53 +0.0 122,864 + MPMX19_02872 0.71 +0.6 122,864 + MPMX19_02872 0.71 -0.7 122,864 + MPMX19_02872 0.71 +0.7 122,864 + MPMX19_02872 0.71 +0.9 122,864 + MPMX19_02872 0.71 -0.7 122,864 + MPMX19_02872 0.71 -0.1 122,864 + MPMX19_02872 0.71 -0.9 122,865 - MPMX19_02872 0.72 +1.6 122,865 - MPMX19_02872 0.72 -1.1 122,865 - MPMX19_02872 0.72 +1.2 122,865 - MPMX19_02872 0.72 +1.0 122,865 - MPMX19_02872 0.72 -1.0 122,865 - MPMX19_02872 0.72 -0.8 122,865 - MPMX19_02872 0.72 +0.0 122,882 + MPMX19_02872 0.74 -0.5 122,882 + MPMX19_02872 0.74 -2.0 122,882 + MPMX19_02872 0.74 +0.3 122,882 + MPMX19_02872 0.74 -0.2 122,882 + MPMX19_02872 0.74 -0.1 122,883 - MPMX19_02872 0.74 +1.0 122,883 - MPMX19_02872 0.74 -0.1 122,883 - MPMX19_02872 0.74 -0.6 122,883 - MPMX19_02872 0.74 +0.4 122,883 - MPMX19_02872 0.74 +1.3 122,883 - MPMX19_02872 0.74 -0.5 122,897 + MPMX19_02872 0.76 -0.4 122,897 + MPMX19_02872 0.76 -1.9 122,897 + MPMX19_02872 0.76 -2.0 122,898 - MPMX19_02872 0.76 -0.5 122,898 - MPMX19_02872 0.76 -1.2 122,898 - MPMX19_02872 0.76 +0.1 122,898 - MPMX19_02872 0.76 +0.5 122,898 - MPMX19_02872 0.76 -0.8 122,898 - MPMX19_02872 0.76 -0.9 122,898 - MPMX19_02872 0.76 -2.9 122,898 - MPMX19_02872 0.76 -1.2 122,952 - MPMX19_02872 0.82 -2.2 123,133 - -1.2 123,133 - -1.1 123,549 + MPMX19_02873 0.29 -0.4 123,549 + MPMX19_02873 0.29 -2.0 123,549 + MPMX19_02873 0.29 +0.2 123,549 + MPMX19_02873 0.29 -1.5 123,549 + MPMX19_02873 0.29 -0.3 123,549 + MPMX19_02873 0.29 +0.4 123,549 + MPMX19_02873 0.29 -0.2 123,550 - MPMX19_02873 0.29 +0.0 123,550 - MPMX19_02873 0.29 -0.3 123,550 - MPMX19_02873 0.29 +0.9 123,550 - MPMX19_02873 0.29 +0.2 123,550 - MPMX19_02873 0.29 -0.3 123,550 - MPMX19_02873 0.29 +0.2 123,562 - MPMX19_02873 0.30 -0.1 123,651 + MPMX19_02873 0.39 +0.0 123,652 - MPMX19_02873 0.39 +0.5 123,862 - MPMX19_02873 0.60 -1.0 123,963 + MPMX19_02873 0.70 -0.4 123,963 + MPMX19_02873 0.70 +0.0 123,963 + MPMX19_02873 0.70 -1.9 123,963 + MPMX19_02873 0.70 -1.4 123,963 + MPMX19_02873 0.70 -0.1 123,964 - MPMX19_02873 0.70 -0.5 123,964 - MPMX19_02873 0.70 -0.1 123,964 - MPMX19_02873 0.70 -1.7 123,964 - MPMX19_02873 0.70 +0.5
Or see this region's nucleotide sequence