Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00820 and MPMX19_00821 are separated by 17 nucleotides MPMX19_00821 and MPMX19_00822 are separated by 76 nucleotides
MPMX19_00820: MPMX19_00820 - Multicopper oxidase MmcO, at 847,283 to 848,896
_00820
MPMX19_00821: MPMX19_00821 - Protein SlyX, at 848,914 to 849,141
_00821
MPMX19_00822: MPMX19_00822 - Divalent metal cation transporter MntH, at 849,218 to 850,513
_00822
Position (kb) 848
849
850 Strain fitness (log2 ratio) -2
-1
0
1
2 at 848.044 kb on - strand, within MPMX19_00820 at 848.044 kb on - strand, within MPMX19_00820 at 848.044 kb on - strand, within MPMX19_00820 at 848.102 kb on + strand, within MPMX19_00820 at 848.102 kb on + strand, within MPMX19_00820 at 848.102 kb on + strand, within MPMX19_00820 at 848.102 kb on + strand, within MPMX19_00820 at 848.102 kb on + strand, within MPMX19_00820 at 848.111 kb on + strand, within MPMX19_00820 at 848.111 kb on + strand, within MPMX19_00820 at 848.111 kb on + strand, within MPMX19_00820 at 848.111 kb on + strand, within MPMX19_00820 at 848.112 kb on - strand, within MPMX19_00820 at 848.112 kb on - strand, within MPMX19_00820 at 848.112 kb on - strand, within MPMX19_00820 at 848.112 kb on - strand, within MPMX19_00820 at 848.112 kb on - strand, within MPMX19_00820 at 848.112 kb on - strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.573 kb on + strand, within MPMX19_00820 at 848.574 kb on - strand, within MPMX19_00820 at 848.574 kb on - strand, within MPMX19_00820 at 848.574 kb on - strand, within MPMX19_00820 at 848.574 kb on - strand, within MPMX19_00820 at 848.574 kb on - strand, within MPMX19_00820 at 848.574 kb on - strand, within MPMX19_00820 at 848.574 kb on - strand, within MPMX19_00820 at 848.574 kb on - strand, within MPMX19_00820 at 848.574 kb on - strand, within MPMX19_00820 at 848.586 kb on + strand, within MPMX19_00820 at 848.586 kb on + strand, within MPMX19_00820 at 848.586 kb on + strand, within MPMX19_00820 at 848.587 kb on - strand, within MPMX19_00820 at 848.587 kb on - strand, within MPMX19_00820 at 848.722 kb on - strand, within MPMX19_00820 at 848.880 kb on - strand at 848.880 kb on - strand at 848.880 kb on - strand at 848.880 kb on - strand at 848.880 kb on - strand at 848.918 kb on + strand at 848.918 kb on + strand at 848.919 kb on - strand at 848.919 kb on - strand at 848.919 kb on - strand at 848.919 kb on - strand at 848.919 kb on - strand at 848.919 kb on - strand at 848.919 kb on - strand at 848.919 kb on - strand at 848.960 kb on + strand, within MPMX19_00821 at 848.960 kb on + strand, within MPMX19_00821 at 848.960 kb on + strand, within MPMX19_00821 at 848.960 kb on + strand, within MPMX19_00821 at 848.960 kb on + strand, within MPMX19_00821 at 848.960 kb on + strand, within MPMX19_00821 at 848.961 kb on - strand, within MPMX19_00821 at 848.961 kb on - strand, within MPMX19_00821 at 849.071 kb on + strand, within MPMX19_00821 at 849.071 kb on + strand, within MPMX19_00821 at 849.072 kb on - strand, within MPMX19_00821 at 849.072 kb on - strand, within MPMX19_00821 at 849.072 kb on - strand, within MPMX19_00821 at 849.141 kb on + strand at 849.141 kb on + strand at 849.141 kb on + strand at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.894 kb on + strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822 at 849.895 kb on - strand, within MPMX19_00822
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 848,044 - MPMX19_00820 0.47 -0.5 848,044 - MPMX19_00820 0.47 +1.1 848,044 - MPMX19_00820 0.47 -1.1 848,102 + MPMX19_00820 0.51 +0.3 848,102 + MPMX19_00820 0.51 -0.4 848,102 + MPMX19_00820 0.51 +1.0 848,102 + MPMX19_00820 0.51 +1.5 848,102 + MPMX19_00820 0.51 -0.6 848,111 + MPMX19_00820 0.51 +2.3 848,111 + MPMX19_00820 0.51 -0.1 848,111 + MPMX19_00820 0.51 -1.1 848,111 + MPMX19_00820 0.51 -0.3 848,112 - MPMX19_00820 0.51 +0.5 848,112 - MPMX19_00820 0.51 -0.3 848,112 - MPMX19_00820 0.51 -1.7 848,112 - MPMX19_00820 0.51 -1.1 848,112 - MPMX19_00820 0.51 +0.2 848,112 - MPMX19_00820 0.51 -1.1 848,573 + MPMX19_00820 0.80 -0.3 848,573 + MPMX19_00820 0.80 -1.9 848,573 + MPMX19_00820 0.80 -0.9 848,573 + MPMX19_00820 0.80 +0.9 848,573 + MPMX19_00820 0.80 +0.3 848,573 + MPMX19_00820 0.80 +0.1 848,573 + MPMX19_00820 0.80 -0.7 848,573 + MPMX19_00820 0.80 -1.2 848,573 + MPMX19_00820 0.80 -0.5 848,573 + MPMX19_00820 0.80 -1.9 848,573 + MPMX19_00820 0.80 +1.8 848,574 - MPMX19_00820 0.80 -0.6 848,574 - MPMX19_00820 0.80 -1.3 848,574 - MPMX19_00820 0.80 +0.8 848,574 - MPMX19_00820 0.80 +2.5 848,574 - MPMX19_00820 0.80 +0.2 848,574 - MPMX19_00820 0.80 -0.3 848,574 - MPMX19_00820 0.80 -0.6 848,574 - MPMX19_00820 0.80 -0.9 848,574 - MPMX19_00820 0.80 +0.0 848,586 + MPMX19_00820 0.81 -0.3 848,586 + MPMX19_00820 0.81 +0.2 848,586 + MPMX19_00820 0.81 +0.9 848,587 - MPMX19_00820 0.81 +0.7 848,587 - MPMX19_00820 0.81 -1.4 848,722 - MPMX19_00820 0.89 -0.1 848,880 - -0.8 848,880 - +0.5 848,880 - +0.9 848,880 - +0.5 848,880 - +0.7 848,918 + -0.0 848,918 + -0.1 848,919 - +0.2 848,919 - +0.9 848,919 - +0.1 848,919 - -1.0 848,919 - -1.2 848,919 - +0.6 848,919 - -1.7 848,919 - -0.8 848,960 + MPMX19_00821 0.20 -1.1 848,960 + MPMX19_00821 0.20 -0.9 848,960 + MPMX19_00821 0.20 -0.1 848,960 + MPMX19_00821 0.20 -0.2 848,960 + MPMX19_00821 0.20 -1.9 848,960 + MPMX19_00821 0.20 -0.2 848,961 - MPMX19_00821 0.21 -1.1 848,961 - MPMX19_00821 0.21 -0.9 849,071 + MPMX19_00821 0.69 -1.3 849,071 + MPMX19_00821 0.69 +0.4 849,072 - MPMX19_00821 0.69 -2.2 849,072 - MPMX19_00821 0.69 -1.6 849,072 - MPMX19_00821 0.69 -0.4 849,141 + +1.0 849,141 + -0.3 849,141 + -2.3 849,894 + MPMX19_00822 0.52 -0.7 849,894 + MPMX19_00822 0.52 +1.8 849,894 + MPMX19_00822 0.52 +0.9 849,894 + MPMX19_00822 0.52 +0.5 849,894 + MPMX19_00822 0.52 -1.1 849,894 + MPMX19_00822 0.52 +0.9 849,894 + MPMX19_00822 0.52 -0.5 849,894 + MPMX19_00822 0.52 -0.7 849,894 + MPMX19_00822 0.52 +0.1 849,894 + MPMX19_00822 0.52 -0.8 849,894 + MPMX19_00822 0.52 +0.9 849,894 + MPMX19_00822 0.52 -0.2 849,894 + MPMX19_00822 0.52 -0.4 849,894 + MPMX19_00822 0.52 +0.2 849,894 + MPMX19_00822 0.52 -2.0 849,894 + MPMX19_00822 0.52 +1.0 849,894 + MPMX19_00822 0.52 -0.5 849,894 + MPMX19_00822 0.52 +1.2 849,894 + MPMX19_00822 0.52 -0.3 849,895 - MPMX19_00822 0.52 +0.5 849,895 - MPMX19_00822 0.52 +0.8 849,895 - MPMX19_00822 0.52 +1.0 849,895 - MPMX19_00822 0.52 -0.9 849,895 - MPMX19_00822 0.52 -0.2 849,895 - MPMX19_00822 0.52 -1.3 849,895 - MPMX19_00822 0.52 -0.1 849,895 - MPMX19_00822 0.52 +0.1 849,895 - MPMX19_00822 0.52 +0.6 849,895 - MPMX19_00822 0.52 -1.9 849,895 - MPMX19_00822 0.52 +0.6 849,895 - MPMX19_00822 0.52 +0.2 849,895 - MPMX19_00822 0.52 -1.0 849,895 - MPMX19_00822 0.52 -0.4 849,895 - MPMX19_00822 0.52 +1.0 849,895 - MPMX19_00822 0.52 -0.5 849,895 - MPMX19_00822 0.52 -0.9 849,895 - MPMX19_00822 0.52 +0.5 849,895 - MPMX19_00822 0.52 +0.6
Or see this region's nucleotide sequence