Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00503 and MPMX19_00504 are separated by 8 nucleotides MPMX19_00504 and MPMX19_00505 are separated by 343 nucleotides
MPMX19_00503: MPMX19_00503 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 505,462 to 507,777
_00503
MPMX19_00504: MPMX19_00504 - ATP-dependent Clp protease adapter protein ClpS, at 507,786 to 508,112
_00504
MPMX19_00505: MPMX19_00505 - hypothetical protein, at 508,456 to 508,935
_00505
Position (kb) 507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.795 kb on + strand, within MPMX19_00503 at 506.795 kb on + strand, within MPMX19_00503 at 506.796 kb on - strand, within MPMX19_00503 at 507.131 kb on + strand, within MPMX19_00503 at 507.131 kb on + strand, within MPMX19_00503 at 507.132 kb on - strand, within MPMX19_00503 at 507.371 kb on + strand, within MPMX19_00503 at 507.371 kb on + strand, within MPMX19_00503 at 507.371 kb on + strand, within MPMX19_00503 at 507.372 kb on - strand, within MPMX19_00503 at 507.372 kb on - strand, within MPMX19_00503 at 507.372 kb on - strand, within MPMX19_00503 at 507.597 kb on - strand at 507.707 kb on + strand at 507.707 kb on + strand at 507.708 kb on - strand at 507.787 kb on + strand at 507.787 kb on + strand at 507.788 kb on - strand at 507.799 kb on - strand at 507.874 kb on + strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.875 kb on - strand, within MPMX19_00504 at 507.997 kb on + strand, within MPMX19_00504 at 507.997 kb on + strand, within MPMX19_00504 at 507.998 kb on - strand, within MPMX19_00504 at 507.998 kb on - strand, within MPMX19_00504 at 508.024 kb on + strand, within MPMX19_00504 at 508.024 kb on + strand, within MPMX19_00504 at 508.025 kb on - strand, within MPMX19_00504 at 508.025 kb on - strand, within MPMX19_00504 at 508.025 kb on - strand, within MPMX19_00504 at 508.076 kb on + strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.077 kb on - strand, within MPMX19_00504 at 508.157 kb on + strand at 508.157 kb on + strand at 508.157 kb on + strand at 508.157 kb on + strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.158 kb on - strand at 508.244 kb on + strand at 508.251 kb on + strand at 508.251 kb on + strand at 508.251 kb on + strand at 508.251 kb on + strand at 508.252 kb on - strand at 508.252 kb on - strand at 508.252 kb on - strand at 508.254 kb on + strand at 508.254 kb on + strand at 508.254 kb on + strand at 508.255 kb on - strand at 508.298 kb on + strand at 508.299 kb on - strand at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.604 kb on + strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.605 kb on - strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.802 kb on + strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.803 kb on - strand, within MPMX19_00505 at 508.939 kb on + strand at 508.939 kb on + strand at 508.939 kb on + strand at 508.939 kb on + strand at 508.940 kb on - strand at 508.940 kb on - strand at 508.940 kb on - strand at 508.940 kb on - strand at 508.940 kb on - strand at 508.940 kb on - strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.957 kb on + strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.958 kb on - strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.959 kb on + strand at 508.960 kb on - strand at 509.049 kb on + strand at 509.066 kb on + strand at 509.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 506,795 + MPMX19_00503 0.58 -1.5 506,795 + MPMX19_00503 0.58 -1.8 506,796 - MPMX19_00503 0.58 -1.8 507,131 + MPMX19_00503 0.72 +1.3 507,131 + MPMX19_00503 0.72 -1.1 507,132 - MPMX19_00503 0.72 -1.8 507,371 + MPMX19_00503 0.82 +0.5 507,371 + MPMX19_00503 0.82 -3.1 507,371 + MPMX19_00503 0.82 -2.2 507,372 - MPMX19_00503 0.82 -0.5 507,372 - MPMX19_00503 0.82 -0.8 507,372 - MPMX19_00503 0.82 +1.4 507,597 - -2.3 507,707 + -1.9 507,707 + -1.7 507,708 - +1.2 507,787 + -1.9 507,787 + -1.8 507,788 - +0.9 507,799 - +0.3 507,874 + MPMX19_00504 0.27 -0.4 507,875 - MPMX19_00504 0.27 -0.2 507,875 - MPMX19_00504 0.27 +1.7 507,875 - MPMX19_00504 0.27 +0.3 507,875 - MPMX19_00504 0.27 +0.9 507,997 + MPMX19_00504 0.65 -1.6 507,997 + MPMX19_00504 0.65 -1.2 507,998 - MPMX19_00504 0.65 -1.5 507,998 - MPMX19_00504 0.65 -2.1 508,024 + MPMX19_00504 0.73 -2.6 508,024 + MPMX19_00504 0.73 -1.1 508,025 - MPMX19_00504 0.73 -0.5 508,025 - MPMX19_00504 0.73 -0.5 508,025 - MPMX19_00504 0.73 +1.1 508,076 + MPMX19_00504 0.89 -2.2 508,077 - MPMX19_00504 0.89 -1.3 508,077 - MPMX19_00504 0.89 -1.4 508,077 - MPMX19_00504 0.89 -0.3 508,077 - MPMX19_00504 0.89 -1.8 508,077 - MPMX19_00504 0.89 -0.8 508,077 - MPMX19_00504 0.89 -0.8 508,077 - MPMX19_00504 0.89 -0.7 508,157 + -0.3 508,157 + -1.9 508,157 + -1.1 508,157 + -0.5 508,158 - +1.0 508,158 - -0.3 508,158 - +0.5 508,158 - -0.6 508,158 - -1.2 508,158 - +1.1 508,158 - +0.9 508,158 - -0.8 508,158 - -0.7 508,158 - -2.2 508,244 + +0.4 508,251 + +0.5 508,251 + +0.4 508,251 + +0.6 508,251 + +0.5 508,252 - -0.2 508,252 - -1.8 508,252 - -0.8 508,254 + -0.6 508,254 + -0.2 508,254 + -0.3 508,255 - +0.7 508,298 + -0.5 508,299 - -0.1 508,604 + MPMX19_00505 0.31 -0.3 508,604 + MPMX19_00505 0.31 +0.4 508,604 + MPMX19_00505 0.31 +0.2 508,604 + MPMX19_00505 0.31 +0.6 508,604 + MPMX19_00505 0.31 +0.9 508,604 + MPMX19_00505 0.31 -0.8 508,604 + MPMX19_00505 0.31 -0.4 508,604 + MPMX19_00505 0.31 +0.7 508,604 + MPMX19_00505 0.31 -1.1 508,605 - MPMX19_00505 0.31 -0.6 508,605 - MPMX19_00505 0.31 -2.3 508,605 - MPMX19_00505 0.31 -0.3 508,605 - MPMX19_00505 0.31 -1.1 508,605 - MPMX19_00505 0.31 -0.6 508,605 - MPMX19_00505 0.31 -0.4 508,605 - MPMX19_00505 0.31 -0.4 508,605 - MPMX19_00505 0.31 +0.2 508,605 - MPMX19_00505 0.31 +0.1 508,605 - MPMX19_00505 0.31 -0.6 508,605 - MPMX19_00505 0.31 -1.1 508,802 + MPMX19_00505 0.72 -1.9 508,802 + MPMX19_00505 0.72 +0.6 508,802 + MPMX19_00505 0.72 -1.1 508,802 + MPMX19_00505 0.72 -0.1 508,802 + MPMX19_00505 0.72 -1.1 508,802 + MPMX19_00505 0.72 +0.3 508,802 + MPMX19_00505 0.72 +0.4 508,802 + MPMX19_00505 0.72 -2.8 508,802 + MPMX19_00505 0.72 -0.4 508,802 + MPMX19_00505 0.72 +1.5 508,802 + MPMX19_00505 0.72 -0.6 508,802 + MPMX19_00505 0.72 -0.7 508,802 + MPMX19_00505 0.72 -1.8 508,802 + MPMX19_00505 0.72 +0.2 508,802 + MPMX19_00505 0.72 -1.0 508,802 + MPMX19_00505 0.72 -0.8 508,802 + MPMX19_00505 0.72 -0.8 508,803 - MPMX19_00505 0.72 -0.6 508,803 - MPMX19_00505 0.72 +0.2 508,803 - MPMX19_00505 0.72 -0.6 508,803 - MPMX19_00505 0.72 +1.1 508,803 - MPMX19_00505 0.72 -0.5 508,803 - MPMX19_00505 0.72 +0.1 508,803 - MPMX19_00505 0.72 +0.0 508,803 - MPMX19_00505 0.72 -1.8 508,803 - MPMX19_00505 0.72 +0.5 508,803 - MPMX19_00505 0.72 -0.3 508,939 + -1.1 508,939 + -1.8 508,939 + -0.5 508,939 + -1.5 508,940 - -3.2 508,940 - -0.5 508,940 - -0.7 508,940 - +0.8 508,940 - -0.5 508,940 - +0.5 508,957 + +0.0 508,957 + +0.4 508,957 + +0.1 508,957 + -1.1 508,957 + +0.6 508,957 + +0.4 508,957 + +0.1 508,957 + +1.2 508,957 + +0.2 508,957 + +0.5 508,957 + +0.6 508,957 + -2.1 508,957 + -0.6 508,957 + -0.3 508,957 + -0.0 508,957 + +1.4 508,957 + +0.3 508,957 + -0.9 508,957 + -0.5 508,957 + -1.0 508,957 + -1.5 508,957 + +0.4 508,957 + +0.5 508,957 + -0.8 508,958 - +0.2 508,958 - -0.1 508,958 - -1.9 508,958 - -0.5 508,958 - -1.8 508,958 - +0.4 508,958 - -0.1 508,958 - -0.8 508,958 - -0.6 508,958 - -1.9 508,958 - +0.6 508,958 - -0.1 508,958 - -1.0 508,958 - +0.4 508,958 - +0.7 508,958 - +0.5 508,958 - -1.3 508,958 - -0.1 508,958 - -1.5 508,958 - +0.2 508,958 - -1.1 508,958 - +2.1 508,959 + -0.5 508,959 + +0.1 508,959 + -0.6 508,959 + +0.2 508,960 - -0.9 509,049 + -1.0 509,066 + -0.5 509,077 + -0.6
Or see this region's nucleotide sequence