Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00143 and MPMX19_00144 are separated by 1 nucleotides MPMX19_00144 and MPMX19_00145 are separated by 72 nucleotides MPMX19_00145 and MPMX19_00146 overlap by 4 nucleotides MPMX19_00146 and MPMX19_00147 are separated by 68 nucleotides
MPMX19_00143: MPMX19_00143 - Tyrosine recombinase XerC, at 155,253 to 156,251
_00143
MPMX19_00144: MPMX19_00144 - hypothetical protein, at 156,253 to 156,759
_00144
MPMX19_00145: MPMX19_00145 - DNA adenine methyltransferase YhdJ, at 156,832 to 157,623
_00145
MPMX19_00146: MPMX19_00146 - hypothetical protein, at 157,620 to 157,883
_00146
MPMX19_00147: MPMX19_00147 - hypothetical protein, at 157,952 to 158,698
_00147
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 155.842 kb on - strand, within MPMX19_00143 at 155.842 kb on - strand, within MPMX19_00143 at 155.842 kb on - strand, within MPMX19_00143 at 155.842 kb on - strand, within MPMX19_00143 at 155.842 kb on - strand, within MPMX19_00143 at 155.842 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.034 kb on - strand, within MPMX19_00143 at 156.193 kb on - strand at 156.193 kb on - strand at 156.193 kb on - strand at 156.193 kb on - strand at 156.400 kb on + strand, within MPMX19_00144 at 156.400 kb on + strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.401 kb on - strand, within MPMX19_00144 at 156.464 kb on - strand, within MPMX19_00144 at 156.784 kb on + strand at 156.946 kb on + strand, within MPMX19_00145 at 156.947 kb on - strand, within MPMX19_00145 at 156.985 kb on + strand, within MPMX19_00145 at 156.986 kb on - strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.567 kb on + strand at 157.568 kb on - strand at 157.881 kb on + strand at 157.881 kb on + strand at 157.882 kb on - strand at 157.990 kb on - strand at 158.009 kb on + strand at 158.009 kb on + strand at 158.010 kb on - strand at 158.010 kb on - strand at 158.010 kb on - strand at 158.030 kb on + strand, within MPMX19_00147 at 158.123 kb on + strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.225 kb on + strand, within MPMX19_00147 at 158.226 kb on - strand, within MPMX19_00147 at 158.226 kb on - strand, within MPMX19_00147 at 158.226 kb on - strand, within MPMX19_00147 at 158.352 kb on - strand, within MPMX19_00147 at 158.420 kb on + strand, within MPMX19_00147 at 158.420 kb on + strand, within MPMX19_00147 at 158.420 kb on + strand, within MPMX19_00147 at 158.421 kb on - strand, within MPMX19_00147 at 158.421 kb on - strand, within MPMX19_00147 at 158.421 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.582 kb on + strand, within MPMX19_00147 at 158.583 kb on - strand, within MPMX19_00147 at 158.583 kb on - strand, within MPMX19_00147 at 158.583 kb on - strand, within MPMX19_00147
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 155,842 - MPMX19_00143 0.59 +0.0 155,842 - MPMX19_00143 0.59 -1.2 155,842 - MPMX19_00143 0.59 -1.0 155,842 - MPMX19_00143 0.59 -1.3 155,842 - MPMX19_00143 0.59 +1.6 155,842 - MPMX19_00143 0.59 -0.2 156,034 - MPMX19_00143 0.78 -1.0 156,034 - MPMX19_00143 0.78 +0.1 156,034 - MPMX19_00143 0.78 -0.1 156,034 - MPMX19_00143 0.78 +1.3 156,034 - MPMX19_00143 0.78 -0.8 156,034 - MPMX19_00143 0.78 -1.5 156,034 - MPMX19_00143 0.78 -1.0 156,034 - MPMX19_00143 0.78 -0.5 156,193 - -0.4 156,193 - -0.9 156,193 - -0.9 156,193 - -0.7 156,400 + MPMX19_00144 0.29 -1.5 156,400 + MPMX19_00144 0.29 -1.7 156,401 - MPMX19_00144 0.29 -2.1 156,401 - MPMX19_00144 0.29 -0.4 156,401 - MPMX19_00144 0.29 -1.1 156,401 - MPMX19_00144 0.29 -0.5 156,401 - MPMX19_00144 0.29 -0.7 156,401 - MPMX19_00144 0.29 -0.6 156,401 - MPMX19_00144 0.29 +0.2 156,464 - MPMX19_00144 0.42 +0.7 156,784 + -0.5 156,946 + MPMX19_00145 0.14 -0.8 156,947 - MPMX19_00145 0.15 -0.7 156,985 + MPMX19_00145 0.19 -0.4 156,986 - MPMX19_00145 0.19 +0.3 157,276 + MPMX19_00145 0.56 -0.8 157,276 + MPMX19_00145 0.56 -2.2 157,276 + MPMX19_00145 0.56 -0.6 157,276 + MPMX19_00145 0.56 +0.7 157,276 + MPMX19_00145 0.56 -0.8 157,276 + MPMX19_00145 0.56 -0.8 157,276 + MPMX19_00145 0.56 -0.3 157,276 + MPMX19_00145 0.56 -0.8 157,276 + MPMX19_00145 0.56 -2.8 157,276 + MPMX19_00145 0.56 -0.0 157,276 + MPMX19_00145 0.56 -0.4 157,276 + MPMX19_00145 0.56 +0.4 157,276 + MPMX19_00145 0.56 -2.0 157,276 + MPMX19_00145 0.56 -0.7 157,277 - MPMX19_00145 0.56 -0.4 157,277 - MPMX19_00145 0.56 -1.8 157,277 - MPMX19_00145 0.56 -1.1 157,277 - MPMX19_00145 0.56 -0.3 157,277 - MPMX19_00145 0.56 -1.4 157,277 - MPMX19_00145 0.56 -0.5 157,277 - MPMX19_00145 0.56 -0.4 157,277 - MPMX19_00145 0.56 -0.8 157,277 - MPMX19_00145 0.56 +0.4 157,277 - MPMX19_00145 0.56 -0.6 157,277 - MPMX19_00145 0.56 -0.4 157,277 - MPMX19_00145 0.56 +0.6 157,277 - MPMX19_00145 0.56 -0.1 157,277 - MPMX19_00145 0.56 -0.2 157,277 - MPMX19_00145 0.56 -0.8 157,567 + +0.7 157,568 - -0.4 157,881 + +1.0 157,881 + -1.5 157,882 - -1.5 157,990 - -3.1 158,009 + -1.2 158,009 + +1.6 158,010 - -0.8 158,010 - -1.4 158,010 - -0.5 158,030 + MPMX19_00147 0.10 -0.7 158,123 + MPMX19_00147 0.23 -0.4 158,124 - MPMX19_00147 0.23 -1.5 158,124 - MPMX19_00147 0.23 -0.4 158,124 - MPMX19_00147 0.23 -0.2 158,124 - MPMX19_00147 0.23 -0.5 158,225 + MPMX19_00147 0.37 -1.7 158,226 - MPMX19_00147 0.37 -0.5 158,226 - MPMX19_00147 0.37 -1.5 158,226 - MPMX19_00147 0.37 -0.0 158,352 - MPMX19_00147 0.54 -0.2 158,420 + MPMX19_00147 0.63 +0.6 158,420 + MPMX19_00147 0.63 -0.7 158,420 + MPMX19_00147 0.63 -0.9 158,421 - MPMX19_00147 0.63 +1.1 158,421 - MPMX19_00147 0.63 -1.5 158,421 - MPMX19_00147 0.63 -0.1 158,478 - MPMX19_00147 0.70 +0.9 158,478 - MPMX19_00147 0.70 +0.6 158,478 - MPMX19_00147 0.70 +0.2 158,478 - MPMX19_00147 0.70 +0.6 158,478 - MPMX19_00147 0.70 -1.5 158,478 - MPMX19_00147 0.70 +0.6 158,526 - MPMX19_00147 0.77 -2.0 158,526 - MPMX19_00147 0.77 -0.5 158,526 - MPMX19_00147 0.77 -0.4 158,526 - MPMX19_00147 0.77 -0.8 158,526 - MPMX19_00147 0.77 -0.5 158,526 - MPMX19_00147 0.77 -0.7 158,526 - MPMX19_00147 0.77 -2.3 158,526 - MPMX19_00147 0.77 -0.5 158,526 - MPMX19_00147 0.77 -1.1 158,526 - MPMX19_00147 0.77 -1.8 158,526 - MPMX19_00147 0.77 -0.8 158,526 - MPMX19_00147 0.77 -1.2 158,526 - MPMX19_00147 0.77 -0.2 158,526 - MPMX19_00147 0.77 -2.0 158,526 - MPMX19_00147 0.77 +0.8 158,582 + MPMX19_00147 0.84 -1.5 158,583 - MPMX19_00147 0.84 +0.4 158,583 - MPMX19_00147 0.84 +0.2 158,583 - MPMX19_00147 0.84 +0.2
Or see this region's nucleotide sequence