Strain Fitness in Escherichia coli ECRC62 around BNILDI_20290

Experiment: MPec2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsA and cmk are separated by 110 nucleotidescmk and ycaL are separated by 172 nucleotides BNILDI_20285: rpsA - 30S ribosomal protein S1, at 4,078,005 to 4,079,678 rpsA BNILDI_20290: cmk - (d)CMP kinase, at 4,079,789 to 4,080,472 cmk BNILDI_20295: ycaL - metallopeptidase YcaL, at 4,080,645 to 4,081,409 ycaL Position (kb) 4079 4080 4081Strain fitness (log2 ratio) -2 -1 0 1 2at 4080.485 kb on - strandat 4080.522 kb on - strandat 4080.646 kb on + strandat 4080.646 kb on + strandat 4080.647 kb on - strandat 4080.650 kb on + strandat 4080.651 kb on - strandat 4080.858 kb on - strand, within ycaLat 4080.860 kb on + strand, within ycaLat 4081.064 kb on - strand, within ycaLat 4081.115 kb on + strand, within ycaLat 4081.117 kb on + strand, within ycaLat 4081.117 kb on + strand, within ycaLat 4081.117 kb on + strand, within ycaLat 4081.118 kb on - strand, within ycaLat 4081.126 kb on + strand, within ycaLat 4081.126 kb on + strand, within ycaLat 4081.127 kb on - strand, within ycaLat 4081.127 kb on - strand, within ycaLat 4081.127 kb on - strand, within ycaLat 4081.127 kb on - strand, within ycaLat 4081.148 kb on + strand, within ycaLat 4081.279 kb on - strand, within ycaLat 4081.292 kb on + strand, within ycaLat 4081.293 kb on - strand, within ycaLat 4081.303 kb on - strand, within ycaLat 4081.433 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MPec2
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4,080,485 - -1.0
4,080,522 - -0.1
4,080,646 + -0.5
4,080,646 + +2.5
4,080,647 - +0.7
4,080,650 + -0.5
4,080,651 - -1.8
4,080,858 - ycaL BNILDI_20295 0.28 +1.9
4,080,860 + ycaL BNILDI_20295 0.28 -0.6
4,081,064 - ycaL BNILDI_20295 0.55 -0.4
4,081,115 + ycaL BNILDI_20295 0.61 +0.9
4,081,117 + ycaL BNILDI_20295 0.62 +0.3
4,081,117 + ycaL BNILDI_20295 0.62 +0.8
4,081,117 + ycaL BNILDI_20295 0.62 -0.9
4,081,118 - ycaL BNILDI_20295 0.62 -0.6
4,081,126 + ycaL BNILDI_20295 0.63 +0.9
4,081,126 + ycaL BNILDI_20295 0.63 -0.3
4,081,127 - ycaL BNILDI_20295 0.63 -0.9
4,081,127 - ycaL BNILDI_20295 0.63 +0.4
4,081,127 - ycaL BNILDI_20295 0.63 -0.5
4,081,127 - ycaL BNILDI_20295 0.63 +0.4
4,081,148 + ycaL BNILDI_20295 0.66 +0.1
4,081,279 - ycaL BNILDI_20295 0.83 +0.0
4,081,292 + ycaL BNILDI_20295 0.85 -0.4
4,081,293 - ycaL BNILDI_20295 0.85 +0.3
4,081,303 - ycaL BNILDI_20295 0.86 +0.4
4,081,433 + +0.8

Or see this region's nucleotide sequence