Experiment: MPec2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_15585 and BNILDI_15590 are separated by 2 nucleotides BNILDI_15590 and BNILDI_15595 are separated by 2 nucleotides BNILDI_15595 and BNILDI_15600 are separated by 17 nucleotides
BNILDI_15585: BNILDI_15585 - maltose ABC transporter substrate-binding protein, at 3,133,096 to 3,134,328
_15585
BNILDI_15590: BNILDI_15590 - sugar ABC transporter permease, at 3,134,331 to 3,135,620
_15590
BNILDI_15595: BNILDI_15595 - maltose ABC transporter permease, at 3,135,623 to 3,136,456
_15595
BNILDI_15600: BNILDI_15600 - alpha-glycosidase, at 3,136,474 to 3,138,273
_15600
Position (kb) 3134
3135
3136 Strain fitness (log2 ratio) -1
0
1 at 3133.671 kb on + strand, within BNILDI_15585 at 3133.858 kb on - strand, within BNILDI_15585 at 3133.947 kb on - strand, within BNILDI_15585 at 3133.947 kb on - strand, within BNILDI_15585 at 3135.303 kb on - strand, within BNILDI_15590 at 3136.182 kb on + strand, within BNILDI_15595 at 3136.183 kb on - strand, within BNILDI_15595 at 3136.344 kb on - strand, within BNILDI_15595 at 3136.550 kb on + strand at 3136.587 kb on + strand at 3136.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MPec2 remove 3,133,671 + BNILDI_15585 0.47 -0.0 3,133,858 - BNILDI_15585 0.62 +0.9 3,133,947 - BNILDI_15585 0.69 +0.1 3,133,947 - BNILDI_15585 0.69 +0.4 3,135,303 - BNILDI_15590 0.75 -0.3 3,136,182 + BNILDI_15595 0.67 -0.9 3,136,183 - BNILDI_15595 0.67 +0.9 3,136,344 - BNILDI_15595 0.86 +0.1 3,136,550 + +0.1 3,136,587 + +0.5 3,136,588 - -0.6
Or see this region's nucleotide sequence