Strain Fitness in Escherichia coli ECRC62 around BNILDI_04170

Experiment: MPec2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntadeQ and adeD are separated by 174 nucleotidesadeD and uhpT_E350Q are separated by 44 nucleotides BNILDI_04165: adeQ - adenine permease AdeQ, at 824,793 to 826,127 adeQ BNILDI_04170: adeD - adenine deaminase, at 826,302 to 828,068 adeD BNILDI_04175: uhpT_E350Q - hexose phosphate transporter UhpT, at 828,113 to 829,504 _E350Q Position (kb) 826 827 828 829Strain fitness (log2 ratio) -2 -1 0 1 2 3at 825.546 kb on - strand, within adeQat 825.878 kb on + strand, within adeQat 825.994 kb on + strandat 825.995 kb on - strandat 826.401 kb on - strandat 826.560 kb on - strand, within adeDat 826.799 kb on + strand, within adeDat 826.876 kb on + strand, within adeDat 826.877 kb on - strand, within adeDat 826.881 kb on - strand, within adeDat 826.971 kb on - strand, within adeDat 826.977 kb on + strand, within adeDat 826.978 kb on - strand, within adeDat 826.979 kb on + strand, within adeDat 826.980 kb on - strand, within adeDat 826.983 kb on - strand, within adeDat 826.983 kb on - strand, within adeDat 827.013 kb on + strand, within adeDat 827.013 kb on + strand, within adeDat 827.041 kb on + strand, within adeDat 827.302 kb on + strand, within adeDat 827.372 kb on - strand, within adeDat 827.452 kb on - strand, within adeDat 827.618 kb on + strand, within adeDat 827.729 kb on + strand, within adeDat 827.729 kb on + strand, within adeDat 827.733 kb on - strand, within adeDat 827.815 kb on + strand, within adeDat 828.019 kb on + strandat 828.108 kb on + strandat 828.109 kb on - strandat 828.196 kb on + strandat 828.196 kb on + strandat 828.290 kb on + strand, within uhpT_E350Qat 828.291 kb on - strand, within uhpT_E350Qat 828.291 kb on - strand, within uhpT_E350Qat 828.334 kb on + strand, within uhpT_E350Qat 828.335 kb on - strand, within uhpT_E350Qat 828.335 kb on - strand, within uhpT_E350Qat 828.369 kb on - strand, within uhpT_E350Qat 828.447 kb on + strand, within uhpT_E350Qat 828.447 kb on + strand, within uhpT_E350Qat 828.447 kb on + strand, within uhpT_E350Qat 828.448 kb on - strand, within uhpT_E350Qat 828.451 kb on + strand, within uhpT_E350Qat 828.451 kb on + strand, within uhpT_E350Qat 828.451 kb on + strand, within uhpT_E350Qat 828.451 kb on + strand, within uhpT_E350Qat 828.451 kb on + strand, within uhpT_E350Qat 828.452 kb on - strand, within uhpT_E350Qat 828.452 kb on - strand, within uhpT_E350Qat 828.452 kb on - strand, within uhpT_E350Qat 828.453 kb on + strand, within uhpT_E350Qat 828.453 kb on + strand, within uhpT_E350Qat 828.453 kb on + strand, within uhpT_E350Qat 828.453 kb on + strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.571 kb on + strand, within uhpT_E350Qat 828.654 kb on - strand, within uhpT_E350Qat 828.679 kb on + strand, within uhpT_E350Qat 828.680 kb on - strand, within uhpT_E350Qat 828.680 kb on - strand, within uhpT_E350Qat 828.680 kb on - strand, within uhpT_E350Qat 828.680 kb on - strand, within uhpT_E350Qat 828.683 kb on + strand, within uhpT_E350Qat 828.690 kb on + strand, within uhpT_E350Qat 828.690 kb on + strand, within uhpT_E350Qat 828.744 kb on + strand, within uhpT_E350Qat 828.744 kb on + strand, within uhpT_E350Qat 828.745 kb on - strand, within uhpT_E350Qat 828.779 kb on - strand, within uhpT_E350Qat 828.920 kb on - strand, within uhpT_E350Qat 829.040 kb on - strand, within uhpT_E350Q

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Per-strain Table

Position Strand Gene LocusTag Fraction MPec2
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825,546 - adeQ BNILDI_04165 0.56 -0.7
825,878 + adeQ BNILDI_04165 0.81 -0.4
825,994 + -0.1
825,995 - +1.2
826,401 - -0.8
826,560 - adeD BNILDI_04170 0.15 -0.8
826,799 + adeD BNILDI_04170 0.28 +0.8
826,876 + adeD BNILDI_04170 0.32 -0.3
826,877 - adeD BNILDI_04170 0.33 -0.1
826,881 - adeD BNILDI_04170 0.33 +1.4
826,971 - adeD BNILDI_04170 0.38 +0.0
826,977 + adeD BNILDI_04170 0.38 +0.8
826,978 - adeD BNILDI_04170 0.38 +0.4
826,979 + adeD BNILDI_04170 0.38 -2.0
826,980 - adeD BNILDI_04170 0.38 +0.6
826,983 - adeD BNILDI_04170 0.39 +1.9
826,983 - adeD BNILDI_04170 0.39 -0.8
827,013 + adeD BNILDI_04170 0.40 -0.2
827,013 + adeD BNILDI_04170 0.40 +1.2
827,041 + adeD BNILDI_04170 0.42 +0.9
827,302 + adeD BNILDI_04170 0.57 +0.1
827,372 - adeD BNILDI_04170 0.61 +1.9
827,452 - adeD BNILDI_04170 0.65 +2.2
827,618 + adeD BNILDI_04170 0.74 -0.0
827,729 + adeD BNILDI_04170 0.81 +1.3
827,729 + adeD BNILDI_04170 0.81 -0.2
827,733 - adeD BNILDI_04170 0.81 +0.4
827,815 + adeD BNILDI_04170 0.86 +0.5
828,019 + -0.5
828,108 + +2.8
828,109 - +0.2
828,196 + +1.2
828,196 + -0.8
828,290 + uhpT_E350Q BNILDI_04175 0.13 -1.1
828,291 - uhpT_E350Q BNILDI_04175 0.13 +1.7
828,291 - uhpT_E350Q BNILDI_04175 0.13 -0.5
828,334 + uhpT_E350Q BNILDI_04175 0.16 -0.2
828,335 - uhpT_E350Q BNILDI_04175 0.16 +0.9
828,335 - uhpT_E350Q BNILDI_04175 0.16 +2.2
828,369 - uhpT_E350Q BNILDI_04175 0.18 +0.3
828,447 + uhpT_E350Q BNILDI_04175 0.24 +2.2
828,447 + uhpT_E350Q BNILDI_04175 0.24 -0.3
828,447 + uhpT_E350Q BNILDI_04175 0.24 +1.8
828,448 - uhpT_E350Q BNILDI_04175 0.24 -0.5
828,451 + uhpT_E350Q BNILDI_04175 0.24 +0.6
828,451 + uhpT_E350Q BNILDI_04175 0.24 -0.6
828,451 + uhpT_E350Q BNILDI_04175 0.24 -0.2
828,451 + uhpT_E350Q BNILDI_04175 0.24 +0.4
828,451 + uhpT_E350Q BNILDI_04175 0.24 +2.2
828,452 - uhpT_E350Q BNILDI_04175 0.24 +2.6
828,452 - uhpT_E350Q BNILDI_04175 0.24 -0.0
828,452 - uhpT_E350Q BNILDI_04175 0.24 -0.4
828,453 + uhpT_E350Q BNILDI_04175 0.24 -1.5
828,453 + uhpT_E350Q BNILDI_04175 0.24 +1.2
828,453 + uhpT_E350Q BNILDI_04175 0.24 -0.8
828,453 + uhpT_E350Q BNILDI_04175 0.24 -0.4
828,454 - uhpT_E350Q BNILDI_04175 0.24 +0.2
828,454 - uhpT_E350Q BNILDI_04175 0.24 +2.2
828,454 - uhpT_E350Q BNILDI_04175 0.24 +0.6
828,454 - uhpT_E350Q BNILDI_04175 0.24 +0.2
828,454 - uhpT_E350Q BNILDI_04175 0.24 +0.4
828,454 - uhpT_E350Q BNILDI_04175 0.24 +1.3
828,571 + uhpT_E350Q BNILDI_04175 0.33 -0.8
828,654 - uhpT_E350Q BNILDI_04175 0.39 -0.0
828,679 + uhpT_E350Q BNILDI_04175 0.41 +1.2
828,680 - uhpT_E350Q BNILDI_04175 0.41 -0.3
828,680 - uhpT_E350Q BNILDI_04175 0.41 -0.2
828,680 - uhpT_E350Q BNILDI_04175 0.41 -1.1
828,680 - uhpT_E350Q BNILDI_04175 0.41 -0.3
828,683 + uhpT_E350Q BNILDI_04175 0.41 -0.5
828,690 + uhpT_E350Q BNILDI_04175 0.41 +1.3
828,690 + uhpT_E350Q BNILDI_04175 0.41 +2.2
828,744 + uhpT_E350Q BNILDI_04175 0.45 +0.2
828,744 + uhpT_E350Q BNILDI_04175 0.45 -0.3
828,745 - uhpT_E350Q BNILDI_04175 0.45 +0.1
828,779 - uhpT_E350Q BNILDI_04175 0.48 -0.6
828,920 - uhpT_E350Q BNILDI_04175 0.58 -0.3
829,040 - uhpT_E350Q BNILDI_04175 0.67 +0.5

Or see this region's nucleotide sequence