Experiment: MPec2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmJ and gorA are separated by 71 nucleotides gorA and BNILDI_03225 are separated by 164 nucleotides BNILDI_03225 and arsR are separated by 307 nucleotides
BNILDI_03215: rlmJ - 23S rRNA (adenine(2030)-N(6))-methyltransferase, at 624,980 to 625,822
rlmJ
BNILDI_03220: gorA - glutathione-disulfide reductase, at 625,894 to 627,246
gorA
BNILDI_03225: BNILDI_03225 - hypothetical protein, at 627,411 to 627,584
_03225
BNILDI_03235: arsR - As(III)-sensing metalloregulatory transcriptional repressor ArsR, at 627,892 to 628,245
arsR
Position (kb) 625
626
627
628 Strain fitness (log2 ratio) -2
-1
0
1
2 at 624.911 kb on + strand at 624.911 kb on + strand at 624.912 kb on - strand at 624.944 kb on - strand at 625.036 kb on + strand at 625.037 kb on - strand at 625.078 kb on + strand, within rlmJ at 625.161 kb on - strand, within rlmJ at 625.299 kb on + strand, within rlmJ at 625.553 kb on + strand, within rlmJ at 625.801 kb on - strand at 625.843 kb on + strand at 625.844 kb on - strand at 625.844 kb on - strand at 625.847 kb on - strand at 625.858 kb on + strand at 625.858 kb on + strand at 625.906 kb on + strand at 625.912 kb on + strand at 625.912 kb on + strand at 625.912 kb on + strand at 625.913 kb on - strand at 625.913 kb on - strand at 625.966 kb on - strand at 626.085 kb on + strand, within gorA at 626.086 kb on - strand, within gorA at 626.089 kb on + strand, within gorA at 626.090 kb on - strand, within gorA at 626.125 kb on - strand, within gorA at 626.181 kb on + strand, within gorA at 626.181 kb on + strand, within gorA at 626.188 kb on + strand, within gorA at 626.212 kb on - strand, within gorA at 626.222 kb on + strand, within gorA at 626.222 kb on + strand, within gorA at 626.351 kb on - strand, within gorA at 626.487 kb on + strand, within gorA at 626.785 kb on - strand, within gorA at 626.789 kb on - strand, within gorA at 626.875 kb on - strand, within gorA at 626.943 kb on + strand, within gorA at 627.004 kb on + strand, within gorA at 627.005 kb on - strand, within gorA at 627.005 kb on - strand, within gorA at 627.007 kb on - strand, within gorA at 627.028 kb on + strand, within gorA at 627.028 kb on + strand, within gorA at 627.029 kb on - strand, within gorA at 627.029 kb on - strand, within gorA at 627.029 kb on - strand, within gorA at 627.195 kb on + strand at 627.195 kb on + strand at 627.260 kb on - strand at 627.265 kb on + strand at 627.266 kb on - strand at 627.266 kb on - strand at 627.266 kb on - strand at 627.284 kb on - strand at 627.287 kb on + strand at 627.288 kb on - strand at 627.348 kb on + strand at 627.349 kb on - strand at 627.349 kb on - strand at 627.375 kb on - strand at 627.455 kb on - strand, within BNILDI_03225 at 627.455 kb on - strand, within BNILDI_03225 at 627.589 kb on - strand at 627.606 kb on + strand at 627.606 kb on + strand at 627.606 kb on + strand at 627.793 kb on + strand at 627.794 kb on - strand at 627.891 kb on + strand at 627.892 kb on - strand at 627.959 kb on + strand, within arsR at 628.068 kb on - strand, within arsR at 628.089 kb on + strand, within arsR
Per-strain Table
Position Strand Gene LocusTag Fraction MPec2 remove 624,911 + +0.1 624,911 + +0.8 624,912 - +2.1 624,944 - +0.9 625,036 + +0.8 625,037 - +0.7 625,078 + rlmJ BNILDI_03215 0.12 +0.3 625,161 - rlmJ BNILDI_03215 0.21 -1.5 625,299 + rlmJ BNILDI_03215 0.38 -0.4 625,553 + rlmJ BNILDI_03215 0.68 -0.3 625,801 - -0.4 625,843 + +0.2 625,844 - -0.6 625,844 - -0.7 625,847 - -1.2 625,858 + -1.6 625,858 + -0.6 625,906 + +0.3 625,912 + +1.7 625,912 + +0.2 625,912 + -1.0 625,913 - -1.2 625,913 - -1.2 625,966 - -0.4 626,085 + gorA BNILDI_03220 0.14 +1.5 626,086 - gorA BNILDI_03220 0.14 -0.4 626,089 + gorA BNILDI_03220 0.14 +1.1 626,090 - gorA BNILDI_03220 0.14 +0.5 626,125 - gorA BNILDI_03220 0.17 -0.9 626,181 + gorA BNILDI_03220 0.21 -0.2 626,181 + gorA BNILDI_03220 0.21 -0.2 626,188 + gorA BNILDI_03220 0.22 +0.5 626,212 - gorA BNILDI_03220 0.24 +0.5 626,222 + gorA BNILDI_03220 0.24 -0.1 626,222 + gorA BNILDI_03220 0.24 +0.5 626,351 - gorA BNILDI_03220 0.34 -0.1 626,487 + gorA BNILDI_03220 0.44 -0.2 626,785 - gorA BNILDI_03220 0.66 -0.4 626,789 - gorA BNILDI_03220 0.66 -1.0 626,875 - gorA BNILDI_03220 0.73 -0.1 626,943 + gorA BNILDI_03220 0.78 +0.1 627,004 + gorA BNILDI_03220 0.82 -0.5 627,005 - gorA BNILDI_03220 0.82 -2.2 627,005 - gorA BNILDI_03220 0.82 +1.5 627,007 - gorA BNILDI_03220 0.82 +0.5 627,028 + gorA BNILDI_03220 0.84 -2.1 627,028 + gorA BNILDI_03220 0.84 +0.2 627,029 - gorA BNILDI_03220 0.84 -0.1 627,029 - gorA BNILDI_03220 0.84 +1.1 627,029 - gorA BNILDI_03220 0.84 -0.5 627,195 + +0.5 627,195 + -0.2 627,260 - +0.4 627,265 + -0.7 627,266 - -0.3 627,266 - +1.1 627,266 - +1.7 627,284 - -0.2 627,287 + -2.1 627,288 - -0.9 627,348 + +0.1 627,349 - +0.5 627,349 - -0.7 627,375 - +0.2 627,455 - BNILDI_03225 0.25 -0.2 627,455 - BNILDI_03225 0.25 -0.1 627,589 - +0.2 627,606 + -1.4 627,606 + -0.5 627,606 + -1.5 627,793 + -0.3 627,794 - -1.0 627,891 + -1.8 627,892 - -0.4 627,959 + arsR BNILDI_03235 0.19 +0.1 628,068 - arsR BNILDI_03235 0.50 +0.4 628,089 + arsR BNILDI_03235 0.56 +0.5
Or see this region's nucleotide sequence