Experiment: MPec2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhbS and ubiT overlap by 7 nucleotides ubiT and ubiU are separated by 208 nucleotides ubiU and rlhA are separated by 8 nucleotides
BNILDI_01545: yhbS - Uncharacterized N-acetyltransferase YhbS, at 303,372 to 303,875
yhbS
BNILDI_01550: ubiT - Ubiquinone biosynthesis accessory factor UbiT, at 303,869 to 304,393
ubiT
BNILDI_01555: ubiU - Ubiquinone biosynthesis protein UbiU, at 304,602 to 305,597
ubiU
BNILDI_01560: rlhA - U32 family peptidase, at 305,606 to 306,484
rlhA
Position (kb) 304
305
306 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 303.628 kb on + strand, within yhbS at 303.628 kb on + strand, within yhbS at 303.710 kb on - strand, within yhbS at 303.822 kb on + strand, within yhbS at 303.822 kb on + strand, within yhbS at 303.822 kb on + strand, within yhbS at 303.822 kb on + strand, within yhbS at 303.822 kb on + strand, within yhbS at 303.823 kb on - strand, within yhbS at 303.870 kb on + strand at 303.870 kb on + strand at 303.870 kb on + strand at 303.871 kb on - strand at 304.124 kb on - strand, within ubiT at 304.124 kb on - strand, within ubiT at 304.216 kb on + strand, within ubiT at 304.216 kb on + strand, within ubiT at 304.217 kb on - strand, within ubiT at 304.283 kb on + strand, within ubiT at 304.283 kb on + strand, within ubiT at 304.284 kb on - strand, within ubiT at 304.451 kb on - strand at 304.458 kb on + strand at 304.459 kb on - strand at 304.459 kb on - strand at 304.488 kb on + strand at 304.506 kb on - strand at 304.514 kb on + strand at 304.514 kb on + strand at 304.545 kb on - strand at 304.674 kb on + strand at 304.675 kb on - strand at 304.684 kb on + strand at 304.694 kb on + strand at 304.987 kb on - strand, within ubiU at 305.075 kb on - strand, within ubiU at 305.130 kb on + strand, within ubiU at 305.384 kb on - strand, within ubiU at 305.439 kb on + strand, within ubiU at 305.440 kb on - strand, within ubiU at 305.586 kb on - strand at 305.666 kb on + strand at 305.703 kb on - strand, within rlhA at 305.856 kb on - strand, within rlhA at 305.908 kb on + strand, within rlhA at 305.909 kb on - strand, within rlhA at 305.909 kb on - strand, within rlhA at 305.960 kb on + strand, within rlhA at 306.013 kb on + strand, within rlhA at 306.013 kb on + strand, within rlhA at 306.014 kb on - strand, within rlhA at 306.056 kb on - strand, within rlhA at 306.056 kb on - strand, within rlhA at 306.120 kb on + strand, within rlhA at 306.121 kb on - strand, within rlhA at 306.121 kb on - strand, within rlhA at 306.132 kb on - strand, within rlhA at 306.199 kb on + strand, within rlhA at 306.199 kb on + strand, within rlhA at 306.199 kb on + strand, within rlhA at 306.199 kb on + strand, within rlhA at 306.199 kb on + strand, within rlhA at 306.200 kb on - strand, within rlhA at 306.200 kb on - strand, within rlhA at 306.200 kb on - strand, within rlhA at 306.439 kb on + strand at 306.482 kb on + strand at 306.482 kb on + strand at 306.487 kb on - strand at 306.501 kb on + strand at 306.502 kb on - strand at 306.550 kb on - strand at 306.550 kb on - strand at 306.550 kb on - strand at 306.554 kb on - strand at 306.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MPec2 remove 303,628 + yhbS BNILDI_01545 0.51 +0.1 303,628 + yhbS BNILDI_01545 0.51 +0.5 303,710 - yhbS BNILDI_01545 0.67 -0.3 303,822 + yhbS BNILDI_01545 0.89 +0.8 303,822 + yhbS BNILDI_01545 0.89 -0.2 303,822 + yhbS BNILDI_01545 0.89 -0.4 303,822 + yhbS BNILDI_01545 0.89 -0.0 303,822 + yhbS BNILDI_01545 0.89 +0.3 303,823 - yhbS BNILDI_01545 0.89 -0.2 303,870 + -0.2 303,870 + -0.6 303,870 + +0.5 303,871 - +0.5 304,124 - ubiT BNILDI_01550 0.49 -1.0 304,124 - ubiT BNILDI_01550 0.49 +1.5 304,216 + ubiT BNILDI_01550 0.66 +0.1 304,216 + ubiT BNILDI_01550 0.66 +0.2 304,217 - ubiT BNILDI_01550 0.66 -0.8 304,283 + ubiT BNILDI_01550 0.79 -2.0 304,283 + ubiT BNILDI_01550 0.79 +0.7 304,284 - ubiT BNILDI_01550 0.79 -0.5 304,451 - -0.5 304,458 + +0.1 304,459 - -0.0 304,459 - +0.3 304,488 + +0.7 304,506 - +0.6 304,514 + +0.3 304,514 + -1.5 304,545 - -0.4 304,674 + +1.1 304,675 - +1.1 304,684 + +0.3 304,694 + -0.5 304,987 - ubiU BNILDI_01555 0.39 +0.5 305,075 - ubiU BNILDI_01555 0.47 +0.9 305,130 + ubiU BNILDI_01555 0.53 -0.7 305,384 - ubiU BNILDI_01555 0.79 +2.1 305,439 + ubiU BNILDI_01555 0.84 -0.8 305,440 - ubiU BNILDI_01555 0.84 -1.1 305,586 - +0.9 305,666 + -0.3 305,703 - rlhA BNILDI_01560 0.11 +0.3 305,856 - rlhA BNILDI_01560 0.28 +0.4 305,908 + rlhA BNILDI_01560 0.34 +0.1 305,909 - rlhA BNILDI_01560 0.34 +1.3 305,909 - rlhA BNILDI_01560 0.34 -0.3 305,960 + rlhA BNILDI_01560 0.40 -0.0 306,013 + rlhA BNILDI_01560 0.46 +1.1 306,013 + rlhA BNILDI_01560 0.46 +1.0 306,014 - rlhA BNILDI_01560 0.46 +0.5 306,056 - rlhA BNILDI_01560 0.51 -0.4 306,056 - rlhA BNILDI_01560 0.51 -0.1 306,120 + rlhA BNILDI_01560 0.58 -0.2 306,121 - rlhA BNILDI_01560 0.59 +0.3 306,121 - rlhA BNILDI_01560 0.59 -1.5 306,132 - rlhA BNILDI_01560 0.60 +0.0 306,199 + rlhA BNILDI_01560 0.67 +0.3 306,199 + rlhA BNILDI_01560 0.67 -0.9 306,199 + rlhA BNILDI_01560 0.67 +1.3 306,199 + rlhA BNILDI_01560 0.67 -0.9 306,199 + rlhA BNILDI_01560 0.67 -1.0 306,200 - rlhA BNILDI_01560 0.68 +4.1 306,200 - rlhA BNILDI_01560 0.68 -0.8 306,200 - rlhA BNILDI_01560 0.68 +0.5 306,439 + +1.0 306,482 + -0.2 306,482 + -0.5 306,487 - +0.1 306,501 + +0.5 306,502 - -0.4 306,550 - +0.3 306,550 - +0.7 306,550 - +1.3 306,554 - -0.8 306,554 - -0.4
Or see this region's nucleotide sequence