Experiment: Bas68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ddpB and ddpC overlap by 4 nucleotides ddpC and ddpD overlap by 4 nucleotides ddpD and ddpF overlap by 8 nucleotides ddpF and BNILDI_17470 are separated by 36 nucleotides
BNILDI_17450: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 3,511,292 to 3,512,314
ddpB
BNILDI_17455: ddpC - D,D-dipeptide ABC transporter permease, at 3,512,311 to 3,513,207
ddpC
BNILDI_17460: ddpD - putative D,D-dipeptide transport ATP-binding protein DdpD, at 3,513,204 to 3,514,190
ddpD
BNILDI_17465: ddpF - putative D,D-dipeptide transport ATP-binding protein DdpF, at 3,514,183 to 3,515,109
ddpF
BNILDI_17470: BNILDI_17470 - LysR family transcriptional regulator, at 3,515,146 to 3,516,036
_17470
Position (kb) 3513
3514
3515 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3512.237 kb on + strand at 3512.237 kb on + strand at 3512.237 kb on + strand at 3512.238 kb on - strand at 3512.238 kb on - strand at 3512.270 kb on + strand at 3512.270 kb on + strand at 3512.270 kb on + strand at 3512.271 kb on - strand at 3512.318 kb on + strand at 3512.340 kb on - strand at 3512.432 kb on + strand, within ddpC at 3512.433 kb on - strand, within ddpC at 3512.433 kb on - strand, within ddpC at 3512.436 kb on - strand, within ddpC at 3512.441 kb on + strand, within ddpC at 3512.612 kb on + strand, within ddpC at 3512.715 kb on + strand, within ddpC at 3512.716 kb on - strand, within ddpC at 3512.716 kb on - strand, within ddpC at 3512.716 kb on - strand, within ddpC at 3512.716 kb on - strand, within ddpC at 3512.777 kb on + strand, within ddpC at 3512.778 kb on - strand, within ddpC at 3512.803 kb on - strand, within ddpC at 3512.822 kb on - strand, within ddpC at 3512.850 kb on - strand, within ddpC at 3512.856 kb on - strand, within ddpC at 3512.865 kb on + strand, within ddpC at 3512.865 kb on + strand, within ddpC at 3512.866 kb on - strand, within ddpC at 3512.866 kb on - strand, within ddpC at 3512.866 kb on - strand, within ddpC at 3512.866 kb on - strand, within ddpC at 3512.866 kb on - strand, within ddpC at 3512.866 kb on - strand, within ddpC at 3512.869 kb on + strand, within ddpC at 3512.870 kb on - strand, within ddpC at 3512.925 kb on + strand, within ddpC at 3512.934 kb on + strand, within ddpC at 3513.076 kb on + strand, within ddpC at 3513.076 kb on + strand, within ddpC at 3513.076 kb on + strand, within ddpC at 3513.076 kb on + strand, within ddpC at 3513.076 kb on + strand, within ddpC at 3513.077 kb on - strand, within ddpC at 3513.077 kb on - strand, within ddpC at 3513.077 kb on - strand, within ddpC at 3513.077 kb on - strand, within ddpC at 3513.162 kb on + strand at 3513.258 kb on - strand at 3513.345 kb on - strand, within ddpD at 3513.393 kb on + strand, within ddpD at 3513.401 kb on - strand, within ddpD at 3513.556 kb on + strand, within ddpD at 3513.557 kb on - strand, within ddpD at 3513.557 kb on - strand, within ddpD at 3513.577 kb on + strand, within ddpD at 3513.577 kb on + strand, within ddpD at 3513.578 kb on - strand, within ddpD at 3513.806 kb on + strand, within ddpD at 3513.807 kb on - strand, within ddpD at 3513.851 kb on + strand, within ddpD at 3513.886 kb on - strand, within ddpD at 3513.886 kb on - strand, within ddpD at 3513.894 kb on + strand, within ddpD at 3513.895 kb on - strand, within ddpD at 3513.895 kb on - strand, within ddpD at 3513.907 kb on + strand, within ddpD at 3513.957 kb on + strand, within ddpD at 3513.960 kb on - strand, within ddpD at 3513.998 kb on - strand, within ddpD at 3514.009 kb on + strand, within ddpD at 3514.010 kb on - strand, within ddpD at 3514.180 kb on + strand at 3514.251 kb on + strand at 3514.400 kb on - strand, within ddpF at 3514.400 kb on - strand, within ddpF at 3514.425 kb on + strand, within ddpF at 3514.512 kb on + strand, within ddpF at 3514.512 kb on + strand, within ddpF at 3514.512 kb on + strand, within ddpF at 3514.512 kb on + strand, within ddpF at 3514.513 kb on - strand, within ddpF at 3514.519 kb on - strand, within ddpF at 3514.769 kb on - strand, within ddpF at 3514.769 kb on - strand, within ddpF at 3514.769 kb on - strand, within ddpF at 3514.799 kb on + strand, within ddpF at 3514.807 kb on - strand, within ddpF at 3514.807 kb on - strand, within ddpF at 3514.894 kb on + strand, within ddpF at 3514.894 kb on + strand, within ddpF at 3514.894 kb on + strand, within ddpF at 3514.895 kb on - strand, within ddpF at 3514.895 kb on - strand, within ddpF at 3514.958 kb on + strand, within ddpF at 3514.962 kb on + strand, within ddpF at 3514.963 kb on - strand, within ddpF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas68 remove 3,512,237 + -0.2 3,512,237 + -1.1 3,512,237 + +1.3 3,512,238 - -0.5 3,512,238 - -0.0 3,512,270 + -2.0 3,512,270 + -0.2 3,512,270 + +0.2 3,512,271 - +0.6 3,512,318 + +0.0 3,512,340 - -0.0 3,512,432 + ddpC BNILDI_17455 0.13 +0.6 3,512,433 - ddpC BNILDI_17455 0.14 +0.5 3,512,433 - ddpC BNILDI_17455 0.14 -0.2 3,512,436 - ddpC BNILDI_17455 0.14 +0.8 3,512,441 + ddpC BNILDI_17455 0.14 +0.3 3,512,612 + ddpC BNILDI_17455 0.34 -0.2 3,512,715 + ddpC BNILDI_17455 0.45 +1.6 3,512,716 - ddpC BNILDI_17455 0.45 +0.1 3,512,716 - ddpC BNILDI_17455 0.45 -0.4 3,512,716 - ddpC BNILDI_17455 0.45 -0.3 3,512,716 - ddpC BNILDI_17455 0.45 -1.2 3,512,777 + ddpC BNILDI_17455 0.52 +0.8 3,512,778 - ddpC BNILDI_17455 0.52 +0.2 3,512,803 - ddpC BNILDI_17455 0.55 -0.4 3,512,822 - ddpC BNILDI_17455 0.57 +0.4 3,512,850 - ddpC BNILDI_17455 0.60 -1.0 3,512,856 - ddpC BNILDI_17455 0.61 -0.5 3,512,865 + ddpC BNILDI_17455 0.62 -0.7 3,512,865 + ddpC BNILDI_17455 0.62 -0.4 3,512,866 - ddpC BNILDI_17455 0.62 -0.0 3,512,866 - ddpC BNILDI_17455 0.62 +0.3 3,512,866 - ddpC BNILDI_17455 0.62 +0.2 3,512,866 - ddpC BNILDI_17455 0.62 -0.8 3,512,866 - ddpC BNILDI_17455 0.62 -2.2 3,512,866 - ddpC BNILDI_17455 0.62 +1.6 3,512,869 + ddpC BNILDI_17455 0.62 -0.2 3,512,870 - ddpC BNILDI_17455 0.62 -0.3 3,512,925 + ddpC BNILDI_17455 0.68 -0.5 3,512,934 + ddpC BNILDI_17455 0.69 -0.7 3,513,076 + ddpC BNILDI_17455 0.85 -0.1 3,513,076 + ddpC BNILDI_17455 0.85 +0.6 3,513,076 + ddpC BNILDI_17455 0.85 -0.5 3,513,076 + ddpC BNILDI_17455 0.85 +0.2 3,513,076 + ddpC BNILDI_17455 0.85 -1.8 3,513,077 - ddpC BNILDI_17455 0.85 -0.4 3,513,077 - ddpC BNILDI_17455 0.85 -1.0 3,513,077 - ddpC BNILDI_17455 0.85 -0.1 3,513,077 - ddpC BNILDI_17455 0.85 +0.0 3,513,162 + -0.6 3,513,258 - -1.6 3,513,345 - ddpD BNILDI_17460 0.14 +1.2 3,513,393 + ddpD BNILDI_17460 0.19 -0.1 3,513,401 - ddpD BNILDI_17460 0.20 -1.4 3,513,556 + ddpD BNILDI_17460 0.36 +0.4 3,513,557 - ddpD BNILDI_17460 0.36 -0.7 3,513,557 - ddpD BNILDI_17460 0.36 +0.3 3,513,577 + ddpD BNILDI_17460 0.38 +0.3 3,513,577 + ddpD BNILDI_17460 0.38 +2.0 3,513,578 - ddpD BNILDI_17460 0.38 +0.3 3,513,806 + ddpD BNILDI_17460 0.61 -0.5 3,513,807 - ddpD BNILDI_17460 0.61 +0.4 3,513,851 + ddpD BNILDI_17460 0.66 +0.4 3,513,886 - ddpD BNILDI_17460 0.69 -0.4 3,513,886 - ddpD BNILDI_17460 0.69 +0.9 3,513,894 + ddpD BNILDI_17460 0.70 +0.4 3,513,895 - ddpD BNILDI_17460 0.70 -0.6 3,513,895 - ddpD BNILDI_17460 0.70 -2.3 3,513,907 + ddpD BNILDI_17460 0.71 -0.4 3,513,957 + ddpD BNILDI_17460 0.76 +0.2 3,513,960 - ddpD BNILDI_17460 0.77 -1.0 3,513,998 - ddpD BNILDI_17460 0.80 +0.3 3,514,009 + ddpD BNILDI_17460 0.82 +0.0 3,514,010 - ddpD BNILDI_17460 0.82 +0.0 3,514,180 + +0.6 3,514,251 + +1.6 3,514,400 - ddpF BNILDI_17465 0.23 +0.4 3,514,400 - ddpF BNILDI_17465 0.23 -0.6 3,514,425 + ddpF BNILDI_17465 0.26 -1.3 3,514,512 + ddpF BNILDI_17465 0.35 -0.2 3,514,512 + ddpF BNILDI_17465 0.35 -1.0 3,514,512 + ddpF BNILDI_17465 0.35 -1.2 3,514,512 + ddpF BNILDI_17465 0.35 +0.3 3,514,513 - ddpF BNILDI_17465 0.36 +0.1 3,514,519 - ddpF BNILDI_17465 0.36 +0.6 3,514,769 - ddpF BNILDI_17465 0.63 -1.2 3,514,769 - ddpF BNILDI_17465 0.63 -0.4 3,514,769 - ddpF BNILDI_17465 0.63 -0.1 3,514,799 + ddpF BNILDI_17465 0.66 +0.9 3,514,807 - ddpF BNILDI_17465 0.67 +1.3 3,514,807 - ddpF BNILDI_17465 0.67 -0.1 3,514,894 + ddpF BNILDI_17465 0.77 -1.6 3,514,894 + ddpF BNILDI_17465 0.77 -1.4 3,514,894 + ddpF BNILDI_17465 0.77 -0.3 3,514,895 - ddpF BNILDI_17465 0.77 +0.4 3,514,895 - ddpF BNILDI_17465 0.77 +0.2 3,514,958 + ddpF BNILDI_17465 0.84 -1.1 3,514,962 + ddpF BNILDI_17465 0.84 +0.4 3,514,963 - ddpF BNILDI_17465 0.84 -0.0
Or see this region's nucleotide sequence