Strain Fitness in Escherichia coli ECRC62 around BNILDI_14110

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdusC and yohP are separated by 372 nucleotidesyohP and mdtQ are separated by 223 nucleotides BNILDI_14105: dusC - tRNA dihydrouridine(16) synthase DusC, at 2,842,743 to 2,843,690 dusC BNILDI_14110: yohP - protein YohP, at 2,844,063 to 2,844,146 yohP BNILDI_14115: mdtQ - multidrug resistance outer membrane protein MdtQ, at 2,844,370 to 2,845,806 mdtQ Position (kb) 2844 2845Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2843.101 kb on - strand, within dusCat 2843.101 kb on - strand, within dusCat 2843.429 kb on + strand, within dusCat 2843.458 kb on - strand, within dusCat 2843.458 kb on - strand, within dusCat 2843.562 kb on - strand, within dusCat 2843.593 kb on - strand, within dusCat 2843.698 kb on + strandat 2843.736 kb on + strandat 2844.117 kb on - strand, within yohPat 2844.123 kb on + strand, within yohPat 2844.250 kb on - strandat 2844.268 kb on + strandat 2844.292 kb on + strandat 2844.292 kb on + strandat 2844.417 kb on - strandat 2844.583 kb on - strand, within mdtQat 2844.594 kb on - strand, within mdtQat 2844.639 kb on - strand, within mdtQat 2844.639 kb on - strand, within mdtQat 2844.880 kb on - strand, within mdtQat 2844.992 kb on + strand, within mdtQat 2845.015 kb on - strand, within mdtQat 2845.034 kb on + strand, within mdtQat 2845.034 kb on + strand, within mdtQat 2845.035 kb on - strand, within mdtQat 2845.035 kb on - strand, within mdtQat 2845.035 kb on - strand, within mdtQat 2845.035 kb on - strand, within mdtQat 2845.050 kb on + strand, within mdtQat 2845.051 kb on - strand, within mdtQat 2845.084 kb on - strand, within mdtQat 2845.138 kb on - strand, within mdtQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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2,843,101 - dusC BNILDI_14105 0.38 -0.5
2,843,101 - dusC BNILDI_14105 0.38 +1.7
2,843,429 + dusC BNILDI_14105 0.72 +1.3
2,843,458 - dusC BNILDI_14105 0.75 +0.5
2,843,458 - dusC BNILDI_14105 0.75 +0.1
2,843,562 - dusC BNILDI_14105 0.86 +0.2
2,843,593 - dusC BNILDI_14105 0.90 +0.0
2,843,698 + +1.7
2,843,736 + +0.5
2,844,117 - yohP BNILDI_14110 0.64 -1.4
2,844,123 + yohP BNILDI_14110 0.71 +0.1
2,844,250 - -0.2
2,844,268 + -3.2
2,844,292 + -0.0
2,844,292 + -1.1
2,844,417 - +0.4
2,844,583 - mdtQ BNILDI_14115 0.15 +0.4
2,844,594 - mdtQ BNILDI_14115 0.16 +0.1
2,844,639 - mdtQ BNILDI_14115 0.19 -0.5
2,844,639 - mdtQ BNILDI_14115 0.19 +2.3
2,844,880 - mdtQ BNILDI_14115 0.35 +0.7
2,844,992 + mdtQ BNILDI_14115 0.43 -0.4
2,845,015 - mdtQ BNILDI_14115 0.45 -0.4
2,845,034 + mdtQ BNILDI_14115 0.46 -1.4
2,845,034 + mdtQ BNILDI_14115 0.46 -0.2
2,845,035 - mdtQ BNILDI_14115 0.46 -0.6
2,845,035 - mdtQ BNILDI_14115 0.46 +0.3
2,845,035 - mdtQ BNILDI_14115 0.46 +0.1
2,845,035 - mdtQ BNILDI_14115 0.46 +0.5
2,845,050 + mdtQ BNILDI_14115 0.47 +0.1
2,845,051 - mdtQ BNILDI_14115 0.47 -0.3
2,845,084 - mdtQ BNILDI_14115 0.50 -0.5
2,845,138 - mdtQ BNILDI_14115 0.53 +0.9

Or see this region's nucleotide sequence