Experiment: Bas68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yejO and Pro_trna are separated by 328 nucleotides Pro_trna and yejM are separated by 74 nucleotides yejM and yejL are separated by 19 nucleotides yejL and yejK are separated by 181 nucleotides
BNILDI_13820: yejO - Putative uncharacterized outer membrane protein YejO, at 2,778,411 to 2,780,726
yejO
BNILDI_13825: Pro_trna - tRNA-Pro(ggg), at 2,781,055 to 2,781,131
_trna
BNILDI_13830: yejM - LPS biosynthesis-modulating metalloenzyme YejM, at 2,781,206 to 2,782,966
yejM
BNILDI_13835: yejL - UPF0352 protein YejL, at 2,782,986 to 2,783,213
yejL
BNILDI_13840: yejK - nucleoid-associated protein YejK, at 2,783,395 to 2,784,402
yejK
Position (kb)
2781
2782
2783 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2780.364 kb on + strand, within yejO at 2780.364 kb on + strand, within yejO at 2780.364 kb on + strand, within yejO at 2780.364 kb on + strand, within yejO at 2780.364 kb on + strand, within yejO at 2780.364 kb on + strand, within yejO at 2780.364 kb on + strand, within yejO at 2780.364 kb on + strand, within yejO at 2780.364 kb on + strand, within yejO at 2780.365 kb on - strand, within yejO at 2780.365 kb on - strand, within yejO at 2780.365 kb on - strand, within yejO at 2780.365 kb on - strand, within yejO at 2780.365 kb on - strand, within yejO at 2780.366 kb on + strand, within yejO at 2780.367 kb on - strand, within yejO at 2780.409 kb on + strand, within yejO at 2780.409 kb on + strand, within yejO at 2780.410 kb on - strand, within yejO at 2780.410 kb on - strand, within yejO at 2780.410 kb on - strand, within yejO at 2780.493 kb on + strand, within yejO at 2780.499 kb on - strand at 2780.568 kb on + strand at 2780.607 kb on + strand at 2780.608 kb on - strand at 2780.608 kb on - strand at 2780.645 kb on + strand at 2780.680 kb on + strand at 2780.685 kb on + strand at 2780.685 kb on + strand at 2780.686 kb on - strand at 2780.887 kb on - strand at 2780.887 kb on - strand at 2781.000 kb on + strand at 2781.011 kb on - strand at 2781.011 kb on - strand at 2781.293 kb on + strand at 2781.294 kb on - strand at 2781.301 kb on - strand at 2781.313 kb on + strand at 2781.313 kb on + strand at 2781.313 kb on + strand at 2781.314 kb on - strand at 2781.365 kb on - strand at 2781.494 kb on - strand, within yejM at 2781.511 kb on + strand, within yejM at 2781.511 kb on + strand, within yejM at 2781.514 kb on + strand, within yejM at 2781.549 kb on - strand, within yejM at 2781.641 kb on - strand, within yejM at 2781.719 kb on - strand, within yejM at 2781.720 kb on + strand, within yejM at 2781.721 kb on - strand, within yejM at 2781.939 kb on - strand, within yejM at 2781.939 kb on - strand, within yejM at 2781.973 kb on + strand, within yejM at 2781.974 kb on - strand, within yejM at 2782.015 kb on + strand, within yejM at 2782.018 kb on - strand, within yejM at 2782.018 kb on - strand, within yejM at 2782.018 kb on - strand, within yejM at 2782.018 kb on - strand, within yejM at 2782.018 kb on - strand, within yejM at 2782.018 kb on - strand, within yejM at 2782.035 kb on + strand, within yejM at 2782.081 kb on + strand, within yejM at 2782.172 kb on - strand, within yejM at 2782.255 kb on + strand, within yejM at 2782.281 kb on + strand, within yejM at 2782.281 kb on + strand, within yejM at 2782.282 kb on - strand, within yejM at 2782.402 kb on + strand, within yejM at 2783.249 kb on - strand at 2783.249 kb on - strand at 2783.257 kb on - strand at 2783.391 kb on + strand at 2783.554 kb on + strand, within yejK at 2783.565 kb on + strand, within yejK at 2783.677 kb on + strand, within yejK at 2783.738 kb on - strand, within yejK at 2783.772 kb on + strand, within yejK
Per-strain Table
Position Strand Gene LocusTag Fraction Bas68 remove 2,780,364 + yejO BNILDI_13820 0.84 -0.0 2,780,364 + yejO BNILDI_13820 0.84 -0.0 2,780,364 + yejO BNILDI_13820 0.84 -0.7 2,780,364 + yejO BNILDI_13820 0.84 +1.0 2,780,364 + yejO BNILDI_13820 0.84 -0.5 2,780,364 + yejO BNILDI_13820 0.84 -1.0 2,780,364 + yejO BNILDI_13820 0.84 +1.3 2,780,364 + yejO BNILDI_13820 0.84 -1.7 2,780,364 + yejO BNILDI_13820 0.84 +0.4 2,780,365 - yejO BNILDI_13820 0.84 +0.3 2,780,365 - yejO BNILDI_13820 0.84 -0.1 2,780,365 - yejO BNILDI_13820 0.84 -0.4 2,780,365 - yejO BNILDI_13820 0.84 +0.2 2,780,365 - yejO BNILDI_13820 0.84 +0.3 2,780,366 + yejO BNILDI_13820 0.84 -0.3 2,780,367 - yejO BNILDI_13820 0.84 +3.3 2,780,409 + yejO BNILDI_13820 0.86 -0.6 2,780,409 + yejO BNILDI_13820 0.86 +0.3 2,780,410 - yejO BNILDI_13820 0.86 +0.2 2,780,410 - yejO BNILDI_13820 0.86 -0.3 2,780,410 - yejO BNILDI_13820 0.86 +0.3 2,780,493 + yejO BNILDI_13820 0.90 -0.7 2,780,499 - -0.1 2,780,568 + -0.1 2,780,607 + -0.6 2,780,608 - -0.0 2,780,608 - -0.1 2,780,645 + +1.0 2,780,680 + +0.6 2,780,685 + -1.1 2,780,685 + +0.6 2,780,686 - +0.4 2,780,887 - -0.6 2,780,887 - -0.1 2,781,000 + +1.7 2,781,011 - -0.6 2,781,011 - +0.6 2,781,293 + -0.1 2,781,294 - +0.1 2,781,301 - -0.6 2,781,313 + -0.3 2,781,313 + +2.1 2,781,313 + -0.5 2,781,314 - +0.9 2,781,365 - -0.1 2,781,494 - yejM BNILDI_13830 0.16 -0.6 2,781,511 + yejM BNILDI_13830 0.17 -1.4 2,781,511 + yejM BNILDI_13830 0.17 -0.2 2,781,514 + yejM BNILDI_13830 0.17 +0.1 2,781,549 - yejM BNILDI_13830 0.19 +0.0 2,781,641 - yejM BNILDI_13830 0.25 +0.4 2,781,719 - yejM BNILDI_13830 0.29 -1.9 2,781,720 + yejM BNILDI_13830 0.29 +1.4 2,781,721 - yejM BNILDI_13830 0.29 +0.4 2,781,939 - yejM BNILDI_13830 0.42 -1.8 2,781,939 - yejM BNILDI_13830 0.42 -1.7 2,781,973 + yejM BNILDI_13830 0.44 -0.5 2,781,974 - yejM BNILDI_13830 0.44 -0.9 2,782,015 + yejM BNILDI_13830 0.46 +0.5 2,782,018 - yejM BNILDI_13830 0.46 -0.1 2,782,018 - yejM BNILDI_13830 0.46 -2.4 2,782,018 - yejM BNILDI_13830 0.46 +0.1 2,782,018 - yejM BNILDI_13830 0.46 +0.0 2,782,018 - yejM BNILDI_13830 0.46 -0.1 2,782,018 - yejM BNILDI_13830 0.46 +0.6 2,782,035 + yejM BNILDI_13830 0.47 +0.7 2,782,081 + yejM BNILDI_13830 0.50 +1.3 2,782,172 - yejM BNILDI_13830 0.55 -0.3 2,782,255 + yejM BNILDI_13830 0.60 +1.1 2,782,281 + yejM BNILDI_13830 0.61 -0.6 2,782,281 + yejM BNILDI_13830 0.61 -0.3 2,782,282 - yejM BNILDI_13830 0.61 -0.2 2,782,402 + yejM BNILDI_13830 0.68 -0.6 2,783,249 - +0.3 2,783,249 - +0.7 2,783,257 - +0.8 2,783,391 + -0.0 2,783,554 + yejK BNILDI_13840 0.16 +0.9 2,783,565 + yejK BNILDI_13840 0.17 -0.4 2,783,677 + yejK BNILDI_13840 0.28 +1.3 2,783,738 - yejK BNILDI_13840 0.34 -0.6 2,783,772 + yejK BNILDI_13840 0.37 -0.5
Or see this region's nucleotide sequence