Strain Fitness in Escherichia coli ECRC62 around BNILDI_13830

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyejO and Pro_trna are separated by 328 nucleotidesPro_trna and yejM are separated by 74 nucleotidesyejM and yejL are separated by 19 nucleotidesyejL and yejK are separated by 181 nucleotides BNILDI_13820: yejO - Putative uncharacterized outer membrane protein YejO, at 2,778,411 to 2,780,726 yejO BNILDI_13825: Pro_trna - tRNA-Pro(ggg), at 2,781,055 to 2,781,131 _trna BNILDI_13830: yejM - LPS biosynthesis-modulating metalloenzyme YejM, at 2,781,206 to 2,782,966 yejM BNILDI_13835: yejL - UPF0352 protein YejL, at 2,782,986 to 2,783,213 yejL BNILDI_13840: yejK - nucleoid-associated protein YejK, at 2,783,395 to 2,784,402 yejK Position (kb) 2781 2782 2783Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2780.364 kb on + strand, within yejOat 2780.364 kb on + strand, within yejOat 2780.364 kb on + strand, within yejOat 2780.364 kb on + strand, within yejOat 2780.364 kb on + strand, within yejOat 2780.364 kb on + strand, within yejOat 2780.364 kb on + strand, within yejOat 2780.364 kb on + strand, within yejOat 2780.364 kb on + strand, within yejOat 2780.365 kb on - strand, within yejOat 2780.365 kb on - strand, within yejOat 2780.365 kb on - strand, within yejOat 2780.365 kb on - strand, within yejOat 2780.365 kb on - strand, within yejOat 2780.366 kb on + strand, within yejOat 2780.367 kb on - strand, within yejOat 2780.409 kb on + strand, within yejOat 2780.409 kb on + strand, within yejOat 2780.410 kb on - strand, within yejOat 2780.410 kb on - strand, within yejOat 2780.410 kb on - strand, within yejOat 2780.493 kb on + strand, within yejOat 2780.499 kb on - strandat 2780.568 kb on + strandat 2780.607 kb on + strandat 2780.608 kb on - strandat 2780.608 kb on - strandat 2780.645 kb on + strandat 2780.680 kb on + strandat 2780.685 kb on + strandat 2780.685 kb on + strandat 2780.686 kb on - strandat 2780.887 kb on - strandat 2780.887 kb on - strandat 2781.000 kb on + strandat 2781.011 kb on - strandat 2781.011 kb on - strandat 2781.293 kb on + strandat 2781.294 kb on - strandat 2781.301 kb on - strandat 2781.313 kb on + strandat 2781.313 kb on + strandat 2781.313 kb on + strandat 2781.314 kb on - strandat 2781.365 kb on - strandat 2781.494 kb on - strand, within yejMat 2781.511 kb on + strand, within yejMat 2781.511 kb on + strand, within yejMat 2781.514 kb on + strand, within yejMat 2781.549 kb on - strand, within yejMat 2781.641 kb on - strand, within yejMat 2781.719 kb on - strand, within yejMat 2781.720 kb on + strand, within yejMat 2781.721 kb on - strand, within yejMat 2781.939 kb on - strand, within yejMat 2781.939 kb on - strand, within yejMat 2781.973 kb on + strand, within yejMat 2781.974 kb on - strand, within yejMat 2782.015 kb on + strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.035 kb on + strand, within yejMat 2782.081 kb on + strand, within yejMat 2782.172 kb on - strand, within yejMat 2782.255 kb on + strand, within yejMat 2782.281 kb on + strand, within yejMat 2782.281 kb on + strand, within yejMat 2782.282 kb on - strand, within yejMat 2782.402 kb on + strand, within yejMat 2783.249 kb on - strandat 2783.249 kb on - strandat 2783.257 kb on - strandat 2783.391 kb on + strandat 2783.554 kb on + strand, within yejKat 2783.565 kb on + strand, within yejKat 2783.677 kb on + strand, within yejKat 2783.738 kb on - strand, within yejKat 2783.772 kb on + strand, within yejK

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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2,780,364 + yejO BNILDI_13820 0.84 -0.0
2,780,364 + yejO BNILDI_13820 0.84 -0.0
2,780,364 + yejO BNILDI_13820 0.84 -0.7
2,780,364 + yejO BNILDI_13820 0.84 +1.0
2,780,364 + yejO BNILDI_13820 0.84 -0.5
2,780,364 + yejO BNILDI_13820 0.84 -1.0
2,780,364 + yejO BNILDI_13820 0.84 +1.3
2,780,364 + yejO BNILDI_13820 0.84 -1.7
2,780,364 + yejO BNILDI_13820 0.84 +0.4
2,780,365 - yejO BNILDI_13820 0.84 +0.3
2,780,365 - yejO BNILDI_13820 0.84 -0.1
2,780,365 - yejO BNILDI_13820 0.84 -0.4
2,780,365 - yejO BNILDI_13820 0.84 +0.2
2,780,365 - yejO BNILDI_13820 0.84 +0.3
2,780,366 + yejO BNILDI_13820 0.84 -0.3
2,780,367 - yejO BNILDI_13820 0.84 +3.3
2,780,409 + yejO BNILDI_13820 0.86 -0.6
2,780,409 + yejO BNILDI_13820 0.86 +0.3
2,780,410 - yejO BNILDI_13820 0.86 +0.2
2,780,410 - yejO BNILDI_13820 0.86 -0.3
2,780,410 - yejO BNILDI_13820 0.86 +0.3
2,780,493 + yejO BNILDI_13820 0.90 -0.7
2,780,499 - -0.1
2,780,568 + -0.1
2,780,607 + -0.6
2,780,608 - -0.0
2,780,608 - -0.1
2,780,645 + +1.0
2,780,680 + +0.6
2,780,685 + -1.1
2,780,685 + +0.6
2,780,686 - +0.4
2,780,887 - -0.6
2,780,887 - -0.1
2,781,000 + +1.7
2,781,011 - -0.6
2,781,011 - +0.6
2,781,293 + -0.1
2,781,294 - +0.1
2,781,301 - -0.6
2,781,313 + -0.3
2,781,313 + +2.1
2,781,313 + -0.5
2,781,314 - +0.9
2,781,365 - -0.1
2,781,494 - yejM BNILDI_13830 0.16 -0.6
2,781,511 + yejM BNILDI_13830 0.17 -1.4
2,781,511 + yejM BNILDI_13830 0.17 -0.2
2,781,514 + yejM BNILDI_13830 0.17 +0.1
2,781,549 - yejM BNILDI_13830 0.19 +0.0
2,781,641 - yejM BNILDI_13830 0.25 +0.4
2,781,719 - yejM BNILDI_13830 0.29 -1.9
2,781,720 + yejM BNILDI_13830 0.29 +1.4
2,781,721 - yejM BNILDI_13830 0.29 +0.4
2,781,939 - yejM BNILDI_13830 0.42 -1.8
2,781,939 - yejM BNILDI_13830 0.42 -1.7
2,781,973 + yejM BNILDI_13830 0.44 -0.5
2,781,974 - yejM BNILDI_13830 0.44 -0.9
2,782,015 + yejM BNILDI_13830 0.46 +0.5
2,782,018 - yejM BNILDI_13830 0.46 -0.1
2,782,018 - yejM BNILDI_13830 0.46 -2.4
2,782,018 - yejM BNILDI_13830 0.46 +0.1
2,782,018 - yejM BNILDI_13830 0.46 +0.0
2,782,018 - yejM BNILDI_13830 0.46 -0.1
2,782,018 - yejM BNILDI_13830 0.46 +0.6
2,782,035 + yejM BNILDI_13830 0.47 +0.7
2,782,081 + yejM BNILDI_13830 0.50 +1.3
2,782,172 - yejM BNILDI_13830 0.55 -0.3
2,782,255 + yejM BNILDI_13830 0.60 +1.1
2,782,281 + yejM BNILDI_13830 0.61 -0.6
2,782,281 + yejM BNILDI_13830 0.61 -0.3
2,782,282 - yejM BNILDI_13830 0.61 -0.2
2,782,402 + yejM BNILDI_13830 0.68 -0.6
2,783,249 - +0.3
2,783,249 - +0.7
2,783,257 - +0.8
2,783,391 + -0.0
2,783,554 + yejK BNILDI_13840 0.16 +0.9
2,783,565 + yejK BNILDI_13840 0.17 -0.4
2,783,677 + yejK BNILDI_13840 0.28 +1.3
2,783,738 - yejK BNILDI_13840 0.34 -0.6
2,783,772 + yejK BNILDI_13840 0.37 -0.5

Or see this region's nucleotide sequence