Strain Fitness in Escherichia coli ECRC62 around BNILDI_07935

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaC and dnaT are separated by 2 nucleotidesdnaT and yjjB are separated by 106 nucleotidesyjjB and yjjP overlap by 10 nucleotides BNILDI_07925: dnaC - DNA replication protein DnaC, at 1,587,419 to 1,588,156 dnaC BNILDI_07930: dnaT - primosomal protein DnaT, at 1,588,159 to 1,588,698 dnaT BNILDI_07935: yjjB - threonine/serine exporter, at 1,588,805 to 1,589,278 yjjB BNILDI_07940: yjjP - putative succinate transporter subunit YjjP, at 1,589,269 to 1,590,039 yjjP Position (kb) 1588 1589 1590Strain fitness (log2 ratio) -2 -1 0 1 2at 1588.699 kb on - strandat 1588.699 kb on - strandat 1588.748 kb on - strandat 1588.791 kb on + strandat 1588.791 kb on + strandat 1588.792 kb on - strandat 1588.827 kb on + strandat 1589.014 kb on + strand, within yjjBat 1589.015 kb on - strand, within yjjBat 1589.038 kb on - strand, within yjjBat 1589.057 kb on - strand, within yjjBat 1589.077 kb on + strand, within yjjBat 1589.078 kb on - strand, within yjjBat 1589.239 kb on + strandat 1589.311 kb on + strandat 1589.467 kb on - strand, within yjjPat 1589.467 kb on - strand, within yjjPat 1589.580 kb on + strand, within yjjPat 1589.582 kb on + strand, within yjjPat 1589.583 kb on - strand, within yjjPat 1589.638 kb on - strand, within yjjPat 1589.646 kb on + strand, within yjjPat 1589.677 kb on + strand, within yjjPat 1589.704 kb on + strand, within yjjPat 1589.705 kb on - strand, within yjjPat 1589.705 kb on - strand, within yjjPat 1589.805 kb on + strand, within yjjPat 1589.805 kb on + strand, within yjjPat 1589.806 kb on - strand, within yjjPat 1589.806 kb on - strand, within yjjPat 1589.806 kb on - strand, within yjjPat 1589.876 kb on - strand, within yjjPat 1589.892 kb on + strand, within yjjPat 1590.040 kb on - strandat 1590.057 kb on - strandat 1590.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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1,588,699 - -0.2
1,588,699 - -1.2
1,588,748 - +1.7
1,588,791 + -0.6
1,588,791 + -0.8
1,588,792 - +2.6
1,588,827 + +0.3
1,589,014 + yjjB BNILDI_07935 0.44 +2.0
1,589,015 - yjjB BNILDI_07935 0.44 -0.8
1,589,038 - yjjB BNILDI_07935 0.49 +0.7
1,589,057 - yjjB BNILDI_07935 0.53 -2.0
1,589,077 + yjjB BNILDI_07935 0.57 -0.4
1,589,078 - yjjB BNILDI_07935 0.58 -0.0
1,589,239 + +0.3
1,589,311 + +0.1
1,589,467 - yjjP BNILDI_07940 0.26 -0.6
1,589,467 - yjjP BNILDI_07940 0.26 -1.9
1,589,580 + yjjP BNILDI_07940 0.40 +0.4
1,589,582 + yjjP BNILDI_07940 0.41 +0.4
1,589,583 - yjjP BNILDI_07940 0.41 +0.2
1,589,638 - yjjP BNILDI_07940 0.48 +0.4
1,589,646 + yjjP BNILDI_07940 0.49 -0.3
1,589,677 + yjjP BNILDI_07940 0.53 +0.0
1,589,704 + yjjP BNILDI_07940 0.56 +0.1
1,589,705 - yjjP BNILDI_07940 0.57 -0.1
1,589,705 - yjjP BNILDI_07940 0.57 +0.6
1,589,805 + yjjP BNILDI_07940 0.70 +0.4
1,589,805 + yjjP BNILDI_07940 0.70 +0.2
1,589,806 - yjjP BNILDI_07940 0.70 +0.1
1,589,806 - yjjP BNILDI_07940 0.70 -0.2
1,589,806 - yjjP BNILDI_07940 0.70 -1.0
1,589,876 - yjjP BNILDI_07940 0.79 -0.9
1,589,892 + yjjP BNILDI_07940 0.81 -0.0
1,590,040 - +0.4
1,590,057 - +0.6
1,590,070 - -0.6

Or see this region's nucleotide sequence