Experiment: Bas68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaC and dnaT are separated by 2 nucleotides dnaT and yjjB are separated by 106 nucleotides yjjB and yjjP overlap by 10 nucleotides
BNILDI_07925: dnaC - DNA replication protein DnaC, at 1,587,419 to 1,588,156
dnaC
BNILDI_07930: dnaT - primosomal protein DnaT, at 1,588,159 to 1,588,698
dnaT
BNILDI_07935: yjjB - threonine/serine exporter, at 1,588,805 to 1,589,278
yjjB
BNILDI_07940: yjjP - putative succinate transporter subunit YjjP, at 1,589,269 to 1,590,039
yjjP
Position (kb)
1588
1589
1590 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1588.699 kb on - strand at 1588.699 kb on - strand at 1588.748 kb on - strand at 1588.791 kb on + strand at 1588.791 kb on + strand at 1588.792 kb on - strand at 1588.827 kb on + strand at 1589.014 kb on + strand, within yjjB at 1589.015 kb on - strand, within yjjB at 1589.038 kb on - strand, within yjjB at 1589.057 kb on - strand, within yjjB at 1589.077 kb on + strand, within yjjB at 1589.078 kb on - strand, within yjjB at 1589.239 kb on + strand at 1589.311 kb on + strand at 1589.467 kb on - strand, within yjjP at 1589.467 kb on - strand, within yjjP at 1589.580 kb on + strand, within yjjP at 1589.582 kb on + strand, within yjjP at 1589.583 kb on - strand, within yjjP at 1589.638 kb on - strand, within yjjP at 1589.646 kb on + strand, within yjjP at 1589.677 kb on + strand, within yjjP at 1589.704 kb on + strand, within yjjP at 1589.705 kb on - strand, within yjjP at 1589.705 kb on - strand, within yjjP at 1589.805 kb on + strand, within yjjP at 1589.805 kb on + strand, within yjjP at 1589.806 kb on - strand, within yjjP at 1589.806 kb on - strand, within yjjP at 1589.806 kb on - strand, within yjjP at 1589.876 kb on - strand, within yjjP at 1589.892 kb on + strand, within yjjP at 1590.040 kb on - strand at 1590.057 kb on - strand at 1590.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas68 remove 1,588,699 - -0.2 1,588,699 - -1.2 1,588,748 - +1.7 1,588,791 + -0.6 1,588,791 + -0.8 1,588,792 - +2.6 1,588,827 + +0.3 1,589,014 + yjjB BNILDI_07935 0.44 +2.0 1,589,015 - yjjB BNILDI_07935 0.44 -0.8 1,589,038 - yjjB BNILDI_07935 0.49 +0.7 1,589,057 - yjjB BNILDI_07935 0.53 -2.0 1,589,077 + yjjB BNILDI_07935 0.57 -0.4 1,589,078 - yjjB BNILDI_07935 0.58 -0.0 1,589,239 + +0.3 1,589,311 + +0.1 1,589,467 - yjjP BNILDI_07940 0.26 -0.6 1,589,467 - yjjP BNILDI_07940 0.26 -1.9 1,589,580 + yjjP BNILDI_07940 0.40 +0.4 1,589,582 + yjjP BNILDI_07940 0.41 +0.4 1,589,583 - yjjP BNILDI_07940 0.41 +0.2 1,589,638 - yjjP BNILDI_07940 0.48 +0.4 1,589,646 + yjjP BNILDI_07940 0.49 -0.3 1,589,677 + yjjP BNILDI_07940 0.53 +0.0 1,589,704 + yjjP BNILDI_07940 0.56 +0.1 1,589,705 - yjjP BNILDI_07940 0.57 -0.1 1,589,705 - yjjP BNILDI_07940 0.57 +0.6 1,589,805 + yjjP BNILDI_07940 0.70 +0.4 1,589,805 + yjjP BNILDI_07940 0.70 +0.2 1,589,806 - yjjP BNILDI_07940 0.70 +0.1 1,589,806 - yjjP BNILDI_07940 0.70 -0.2 1,589,806 - yjjP BNILDI_07940 0.70 -1.0 1,589,876 - yjjP BNILDI_07940 0.79 -0.9 1,589,892 + yjjP BNILDI_07940 0.81 -0.0 1,590,040 - +0.4 1,590,057 - +0.6 1,590,070 - -0.6
Or see this region's nucleotide sequence