Strain Fitness in Escherichia coli ECRC62 around BNILDI_07645

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnanM and nanC are separated by 19 nucleotidesnanC and BNILDI_07650 are separated by 797 nucleotides BNILDI_07640: nanM - N-acetylneuraminate epimerase, at 1,526,566 to 1,527,672 nanM BNILDI_07645: nanC - N-acetylneuraminic acid outer membrane channel NanC, at 1,527,692 to 1,528,408 nanC BNILDI_07650: BNILDI_07650 - hypothetical protein, at 1,529,206 to 1,529,601 _07650 Position (kb) 1527 1528 1529Strain fitness (log2 ratio) -1 0 1 2at 1526.760 kb on + strand, within nanMat 1527.344 kb on + strand, within nanMat 1527.345 kb on - strand, within nanMat 1527.489 kb on + strand, within nanMat 1527.515 kb on + strand, within nanMat 1527.535 kb on - strand, within nanMat 1527.816 kb on + strand, within nanCat 1527.817 kb on - strand, within nanCat 1527.821 kb on + strand, within nanCat 1527.889 kb on - strand, within nanCat 1527.923 kb on - strand, within nanCat 1528.070 kb on + strand, within nanCat 1528.102 kb on + strand, within nanCat 1528.232 kb on - strand, within nanCat 1528.660 kb on - strandat 1528.870 kb on + strandat 1529.211 kb on + strandat 1529.261 kb on - strand, within BNILDI_07650at 1529.282 kb on + strand, within BNILDI_07650at 1529.283 kb on - strand, within BNILDI_07650

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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1,526,760 + nanM BNILDI_07640 0.18 -0.7
1,527,344 + nanM BNILDI_07640 0.70 -0.6
1,527,345 - nanM BNILDI_07640 0.70 -0.2
1,527,489 + nanM BNILDI_07640 0.83 -1.2
1,527,515 + nanM BNILDI_07640 0.86 -1.7
1,527,535 - nanM BNILDI_07640 0.88 +0.4
1,527,816 + nanC BNILDI_07645 0.17 -0.9
1,527,817 - nanC BNILDI_07645 0.17 +0.5
1,527,821 + nanC BNILDI_07645 0.18 +0.1
1,527,889 - nanC BNILDI_07645 0.27 -0.4
1,527,923 - nanC BNILDI_07645 0.32 -0.4
1,528,070 + nanC BNILDI_07645 0.53 -0.8
1,528,102 + nanC BNILDI_07645 0.57 +0.3
1,528,232 - nanC BNILDI_07645 0.75 -0.1
1,528,660 - +1.4
1,528,870 + +0.4
1,529,211 + +0.7
1,529,261 - BNILDI_07650 0.14 -0.1
1,529,282 + BNILDI_07650 0.19 +1.8
1,529,283 - BNILDI_07650 0.19 -0.0

Or see this region's nucleotide sequence