Strain Fitness in Escherichia coli ECRC62 around BNILDI_07640

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnanS and nanM are separated by 63 nucleotidesnanM and nanC are separated by 19 nucleotides BNILDI_07635: nanS - putative 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 1,525,522 to 1,526,502 nanS BNILDI_07640: nanM - N-acetylneuraminate epimerase, at 1,526,566 to 1,527,672 nanM BNILDI_07645: nanC - N-acetylneuraminic acid outer membrane channel NanC, at 1,527,692 to 1,528,408 nanC Position (kb) 1526 1527 1528Strain fitness (log2 ratio) -1 0 1at 1525.779 kb on + strand, within nanSat 1525.787 kb on + strand, within nanSat 1525.855 kb on - strand, within nanSat 1525.855 kb on - strand, within nanSat 1525.858 kb on - strand, within nanSat 1525.914 kb on + strand, within nanSat 1525.950 kb on + strand, within nanSat 1525.951 kb on + strand, within nanSat 1526.045 kb on + strand, within nanSat 1526.046 kb on - strand, within nanSat 1526.047 kb on + strand, within nanSat 1526.105 kb on + strand, within nanSat 1526.194 kb on + strand, within nanSat 1526.209 kb on - strand, within nanSat 1526.234 kb on + strand, within nanSat 1526.235 kb on - strand, within nanSat 1526.270 kb on + strand, within nanSat 1526.316 kb on + strand, within nanSat 1526.316 kb on + strand, within nanSat 1526.355 kb on + strand, within nanSat 1526.356 kb on - strand, within nanSat 1526.356 kb on - strand, within nanSat 1526.472 kb on - strandat 1526.474 kb on + strandat 1526.503 kb on - strandat 1526.503 kb on - strandat 1526.580 kb on + strandat 1526.760 kb on + strand, within nanMat 1527.344 kb on + strand, within nanMat 1527.345 kb on - strand, within nanMat 1527.489 kb on + strand, within nanMat 1527.515 kb on + strand, within nanMat 1527.535 kb on - strand, within nanMat 1527.816 kb on + strand, within nanCat 1527.817 kb on - strand, within nanCat 1527.821 kb on + strand, within nanCat 1527.889 kb on - strand, within nanCat 1527.923 kb on - strand, within nanCat 1528.070 kb on + strand, within nanCat 1528.102 kb on + strand, within nanCat 1528.232 kb on - strand, within nanCat 1528.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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1,525,779 + nanS BNILDI_07635 0.26 -0.1
1,525,787 + nanS BNILDI_07635 0.27 +1.2
1,525,855 - nanS BNILDI_07635 0.34 +0.6
1,525,855 - nanS BNILDI_07635 0.34 +0.5
1,525,858 - nanS BNILDI_07635 0.34 -0.4
1,525,914 + nanS BNILDI_07635 0.40 -0.5
1,525,950 + nanS BNILDI_07635 0.44 -1.3
1,525,951 + nanS BNILDI_07635 0.44 +0.1
1,526,045 + nanS BNILDI_07635 0.53 -0.2
1,526,046 - nanS BNILDI_07635 0.53 +0.7
1,526,047 + nanS BNILDI_07635 0.54 +0.2
1,526,105 + nanS BNILDI_07635 0.59 -0.7
1,526,194 + nanS BNILDI_07635 0.69 +0.7
1,526,209 - nanS BNILDI_07635 0.70 +0.5
1,526,234 + nanS BNILDI_07635 0.73 -1.3
1,526,235 - nanS BNILDI_07635 0.73 +1.4
1,526,270 + nanS BNILDI_07635 0.76 -0.1
1,526,316 + nanS BNILDI_07635 0.81 +0.4
1,526,316 + nanS BNILDI_07635 0.81 -0.1
1,526,355 + nanS BNILDI_07635 0.85 +0.3
1,526,356 - nanS BNILDI_07635 0.85 -0.2
1,526,356 - nanS BNILDI_07635 0.85 -0.1
1,526,472 - +0.0
1,526,474 + +1.4
1,526,503 - -0.0
1,526,503 - +0.4
1,526,580 + -1.2
1,526,760 + nanM BNILDI_07640 0.18 -0.7
1,527,344 + nanM BNILDI_07640 0.70 -0.6
1,527,345 - nanM BNILDI_07640 0.70 -0.2
1,527,489 + nanM BNILDI_07640 0.83 -1.2
1,527,515 + nanM BNILDI_07640 0.86 -1.7
1,527,535 - nanM BNILDI_07640 0.88 +0.4
1,527,816 + nanC BNILDI_07645 0.17 -0.9
1,527,817 - nanC BNILDI_07645 0.17 +0.5
1,527,821 + nanC BNILDI_07645 0.18 +0.1
1,527,889 - nanC BNILDI_07645 0.27 -0.4
1,527,923 - nanC BNILDI_07645 0.32 -0.4
1,528,070 + nanC BNILDI_07645 0.53 -0.8
1,528,102 + nanC BNILDI_07645 0.57 +0.3
1,528,232 - nanC BNILDI_07645 0.75 -0.1
1,528,660 - +1.4

Or see this region's nucleotide sequence