Strain Fitness in Escherichia coli ECRC62 around BNILDI_06935

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntorn and Gly_trna are separated by 210 nucleotidesGly_trna and Gly_trna are separated by 36 nucleotidesGly_trna and Gly_trna are separated by 35 nucleotidesGly_trna and yjeV are separated by 233 nucleotidesyjeV and queG overlap by 18 nucleotides BNILDI_06915: orn - oligoribonuclease, at 1,386,346 to 1,386,891 orn BNILDI_06920: Gly_trna - tRNA-Gly(gcc), at 1,387,102 to 1,387,177 _trna BNILDI_06925: Gly_trna - tRNA-Gly(gcc), at 1,387,214 to 1,387,289 _trna BNILDI_06930: Gly_trna - tRNA-Gly(gcc), at 1,387,325 to 1,387,400 _trna BNILDI_06935: yjeV - Uncharacterized protein YjeV, at 1,387,634 to 1,387,687 yjeV BNILDI_06940: queG - tRNA epoxyqueuosine(34) reductase QueG, at 1,387,670 to 1,388,809 queG Position (kb) 1387 1388Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1386.909 kb on + strandat 1386.909 kb on + strandat 1386.910 kb on - strandat 1387.078 kb on + strandat 1387.763 kb on + strandat 1387.787 kb on + strand, within queGat 1387.787 kb on + strand, within queGat 1387.787 kb on + strand, within queGat 1387.787 kb on + strand, within queGat 1387.788 kb on - strand, within queGat 1387.788 kb on - strand, within queGat 1387.788 kb on - strand, within queGat 1387.868 kb on + strand, within queGat 1387.882 kb on + strand, within queGat 1387.883 kb on - strand, within queGat 1387.909 kb on + strand, within queGat 1387.967 kb on + strand, within queGat 1387.967 kb on + strand, within queGat 1387.992 kb on - strand, within queGat 1388.057 kb on - strand, within queGat 1388.057 kb on - strand, within queGat 1388.079 kb on + strand, within queGat 1388.079 kb on + strand, within queGat 1388.084 kb on - strand, within queGat 1388.146 kb on - strand, within queGat 1388.152 kb on + strand, within queGat 1388.152 kb on + strand, within queGat 1388.153 kb on - strand, within queGat 1388.173 kb on + strand, within queGat 1388.173 kb on + strand, within queGat 1388.173 kb on + strand, within queGat 1388.173 kb on + strand, within queGat 1388.336 kb on - strand, within queGat 1388.511 kb on + strand, within queGat 1388.511 kb on + strand, within queGat 1388.566 kb on - strand, within queG

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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1,386,909 + -0.2
1,386,909 + -1.3
1,386,910 - +0.4
1,387,078 + -1.4
1,387,763 + +1.6
1,387,787 + queG BNILDI_06940 0.10 -0.2
1,387,787 + queG BNILDI_06940 0.10 +0.1
1,387,787 + queG BNILDI_06940 0.10 -0.3
1,387,787 + queG BNILDI_06940 0.10 +2.0
1,387,788 - queG BNILDI_06940 0.10 +0.3
1,387,788 - queG BNILDI_06940 0.10 +1.5
1,387,788 - queG BNILDI_06940 0.10 +0.5
1,387,868 + queG BNILDI_06940 0.17 -1.8
1,387,882 + queG BNILDI_06940 0.19 -0.9
1,387,883 - queG BNILDI_06940 0.19 +0.4
1,387,909 + queG BNILDI_06940 0.21 +1.0
1,387,967 + queG BNILDI_06940 0.26 +1.3
1,387,967 + queG BNILDI_06940 0.26 +1.6
1,387,992 - queG BNILDI_06940 0.28 -0.3
1,388,057 - queG BNILDI_06940 0.34 -0.2
1,388,057 - queG BNILDI_06940 0.34 +0.6
1,388,079 + queG BNILDI_06940 0.36 -0.3
1,388,079 + queG BNILDI_06940 0.36 +0.2
1,388,084 - queG BNILDI_06940 0.36 +0.2
1,388,146 - queG BNILDI_06940 0.42 +0.9
1,388,152 + queG BNILDI_06940 0.42 +1.6
1,388,152 + queG BNILDI_06940 0.42 +0.2
1,388,153 - queG BNILDI_06940 0.42 -0.2
1,388,173 + queG BNILDI_06940 0.44 +3.6
1,388,173 + queG BNILDI_06940 0.44 -0.8
1,388,173 + queG BNILDI_06940 0.44 +0.3
1,388,173 + queG BNILDI_06940 0.44 +0.1
1,388,336 - queG BNILDI_06940 0.58 -0.6
1,388,511 + queG BNILDI_06940 0.74 -1.4
1,388,511 + queG BNILDI_06940 0.74 -0.6
1,388,566 - queG BNILDI_06940 0.79 +0.4

Or see this region's nucleotide sequence