Strain Fitness in Escherichia coli ECRC62 around BNILDI_06280

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_06275 and ubiC are separated by 222 nucleotidesubiC and ubiA are separated by 12 nucleotides BNILDI_06275: BNILDI_06275 - SopA family protein, at 1,252,868 to 1,253,959 _06275 BNILDI_06280: ubiC - chorismate lyase, at 1,254,182 to 1,254,679 ubiC BNILDI_06285: ubiA - 4-hydroxybenzoate octaprenyltransferase, at 1,254,692 to 1,255,564 ubiA Position (kb) 1254 1255Strain fitness (log2 ratio) -1 0 1at 1253.201 kb on + strand, within BNILDI_06275at 1253.497 kb on + strand, within BNILDI_06275at 1253.575 kb on + strand, within BNILDI_06275at 1253.706 kb on + strand, within BNILDI_06275at 1253.707 kb on - strand, within BNILDI_06275at 1253.773 kb on + strand, within BNILDI_06275at 1253.813 kb on + strand, within BNILDI_06275at 1253.813 kb on + strand, within BNILDI_06275at 1253.848 kb on + strand, within BNILDI_06275at 1253.849 kb on - strand, within BNILDI_06275at 1253.939 kb on - strandat 1253.958 kb on - strandat 1254.008 kb on - strandat 1254.118 kb on + strandat 1254.119 kb on - strandat 1254.423 kb on + strand, within ubiCat 1254.423 kb on + strand, within ubiCat 1254.533 kb on + strand, within ubiCat 1254.568 kb on + strand, within ubiCat 1254.674 kb on + strandat 1254.675 kb on - strandat 1255.551 kb on - strandat 1255.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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1,253,201 + BNILDI_06275 0.30 -0.3
1,253,497 + BNILDI_06275 0.58 +0.4
1,253,575 + BNILDI_06275 0.65 -1.4
1,253,706 + BNILDI_06275 0.77 -1.7
1,253,707 - BNILDI_06275 0.77 -0.2
1,253,773 + BNILDI_06275 0.83 -0.2
1,253,813 + BNILDI_06275 0.87 -0.0
1,253,813 + BNILDI_06275 0.87 +0.7
1,253,848 + BNILDI_06275 0.90 +0.4
1,253,849 - BNILDI_06275 0.90 -0.3
1,253,939 - -0.2
1,253,958 - +1.7
1,254,008 - -0.4
1,254,118 + +1.5
1,254,119 - +1.5
1,254,423 + ubiC BNILDI_06280 0.48 +1.4
1,254,423 + ubiC BNILDI_06280 0.48 +1.5
1,254,533 + ubiC BNILDI_06280 0.70 -0.2
1,254,568 + ubiC BNILDI_06280 0.78 -0.5
1,254,674 + -0.4
1,254,675 - -0.3
1,255,551 - +1.5
1,255,653 + -0.4

Or see this region's nucleotide sequence