Experiment: Bas68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_04960 and BNILDI_04965 are separated by 367 nucleotides BNILDI_04965 and yifL are separated by 349 nucleotides yifL and dapF are separated by 36 nucleotides
BNILDI_04960: BNILDI_04960 - DKNYY family protein, at 982,135 to 983,613
_04960
BNILDI_04965: BNILDI_04965 - hypothetical protein, at 983,981 to 984,535
_04965
BNILDI_04970: yifL - Uncharacterized lipoprotein YifL, at 984,885 to 985,088
yifL
BNILDI_04975: dapF - diaminopimelate epimerase, at 985,125 to 985,949
dapF
Position (kb) 983
984
985 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 983.045 kb on + strand, within BNILDI_04960 at 983.045 kb on + strand, within BNILDI_04960 at 983.045 kb on + strand, within BNILDI_04960 at 983.046 kb on - strand, within BNILDI_04960 at 983.065 kb on + strand, within BNILDI_04960 at 983.069 kb on - strand, within BNILDI_04960 at 983.081 kb on - strand, within BNILDI_04960 at 983.194 kb on - strand, within BNILDI_04960 at 983.288 kb on + strand, within BNILDI_04960 at 983.288 kb on + strand, within BNILDI_04960 at 983.288 kb on + strand, within BNILDI_04960 at 983.312 kb on + strand, within BNILDI_04960 at 983.342 kb on + strand, within BNILDI_04960 at 983.342 kb on + strand, within BNILDI_04960 at 983.411 kb on - strand, within BNILDI_04960 at 983.414 kb on - strand, within BNILDI_04960 at 983.416 kb on + strand, within BNILDI_04960 at 983.493 kb on - strand at 983.495 kb on - strand at 983.523 kb on + strand at 983.523 kb on + strand at 983.523 kb on + strand at 983.524 kb on - strand at 983.526 kb on + strand at 983.527 kb on - strand at 983.566 kb on + strand at 983.614 kb on - strand at 983.662 kb on + strand at 983.663 kb on - strand at 983.676 kb on + strand at 983.677 kb on - strand at 983.682 kb on + strand at 983.716 kb on + strand at 983.716 kb on + strand at 983.717 kb on - strand at 983.717 kb on - strand at 983.717 kb on - strand at 983.719 kb on - strand at 983.742 kb on - strand at 983.778 kb on - strand at 983.779 kb on + strand at 983.779 kb on + strand at 983.783 kb on + strand at 983.783 kb on + strand at 983.784 kb on - strand at 983.791 kb on - strand at 983.878 kb on + strand at 983.879 kb on - strand at 983.879 kb on - strand at 983.906 kb on + strand at 983.906 kb on + strand at 983.907 kb on - strand at 983.907 kb on - strand at 983.926 kb on + strand at 983.927 kb on - strand at 983.942 kb on - strand at 983.942 kb on - strand at 983.944 kb on + strand at 983.945 kb on - strand at 984.042 kb on + strand, within BNILDI_04965 at 984.085 kb on + strand, within BNILDI_04965 at 984.085 kb on + strand, within BNILDI_04965 at 984.118 kb on + strand, within BNILDI_04965 at 984.118 kb on + strand, within BNILDI_04965 at 984.175 kb on + strand, within BNILDI_04965 at 984.175 kb on + strand, within BNILDI_04965 at 984.205 kb on + strand, within BNILDI_04965 at 984.205 kb on + strand, within BNILDI_04965 at 984.205 kb on + strand, within BNILDI_04965 at 984.205 kb on + strand, within BNILDI_04965 at 984.206 kb on - strand, within BNILDI_04965 at 984.207 kb on + strand, within BNILDI_04965 at 984.207 kb on + strand, within BNILDI_04965 at 984.208 kb on - strand, within BNILDI_04965 at 984.215 kb on - strand, within BNILDI_04965 at 984.220 kb on + strand, within BNILDI_04965 at 984.221 kb on - strand, within BNILDI_04965 at 984.223 kb on + strand, within BNILDI_04965 at 984.224 kb on - strand, within BNILDI_04965 at 984.224 kb on - strand, within BNILDI_04965 at 984.224 kb on - strand, within BNILDI_04965 at 984.227 kb on + strand, within BNILDI_04965 at 984.227 kb on + strand, within BNILDI_04965 at 984.228 kb on - strand, within BNILDI_04965 at 984.228 kb on - strand, within BNILDI_04965 at 984.228 kb on - strand, within BNILDI_04965 at 984.260 kb on - strand, within BNILDI_04965 at 984.414 kb on - strand, within BNILDI_04965 at 984.414 kb on - strand, within BNILDI_04965 at 984.415 kb on + strand, within BNILDI_04965 at 984.449 kb on + strand, within BNILDI_04965 at 984.575 kb on + strand at 984.576 kb on - strand at 984.576 kb on - strand at 984.630 kb on - strand at 984.680 kb on - strand at 984.680 kb on - strand at 984.697 kb on - strand at 984.745 kb on + strand at 984.745 kb on + strand at 984.768 kb on + strand at 984.768 kb on + strand at 984.769 kb on - strand at 984.802 kb on - strand at 984.826 kb on + strand at 984.846 kb on + strand at 984.846 kb on + strand at 984.847 kb on - strand at 984.913 kb on + strand, within yifL at 984.914 kb on - strand, within yifL at 984.916 kb on + strand, within yifL at 984.916 kb on + strand, within yifL at 984.917 kb on - strand, within yifL at 984.920 kb on + strand, within yifL at 984.920 kb on + strand, within yifL at 984.964 kb on - strand, within yifL at 984.964 kb on - strand, within yifL at 984.980 kb on + strand, within yifL at 985.083 kb on + strand at 985.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas68 remove 983,045 + BNILDI_04960 0.62 +0.0 983,045 + BNILDI_04960 0.62 -0.6 983,045 + BNILDI_04960 0.62 +0.3 983,046 - BNILDI_04960 0.62 -0.8 983,065 + BNILDI_04960 0.63 -0.5 983,069 - BNILDI_04960 0.63 -0.1 983,081 - BNILDI_04960 0.64 +0.0 983,194 - BNILDI_04960 0.72 +0.8 983,288 + BNILDI_04960 0.78 +1.5 983,288 + BNILDI_04960 0.78 -0.3 983,288 + BNILDI_04960 0.78 +0.2 983,312 + BNILDI_04960 0.80 +0.5 983,342 + BNILDI_04960 0.82 +1.0 983,342 + BNILDI_04960 0.82 +0.7 983,411 - BNILDI_04960 0.86 +0.6 983,414 - BNILDI_04960 0.86 +0.0 983,416 + BNILDI_04960 0.87 +0.9 983,493 - +0.9 983,495 - +0.4 983,523 + +0.9 983,523 + -0.5 983,523 + -0.3 983,524 - +0.1 983,526 + -1.2 983,527 - +1.1 983,566 + -1.1 983,614 - -1.2 983,662 + -0.6 983,663 - -0.2 983,676 + -0.8 983,677 - -0.0 983,682 + -0.4 983,716 + +0.4 983,716 + +0.9 983,717 - +0.1 983,717 - +0.2 983,717 - +0.2 983,719 - -0.2 983,742 - -0.2 983,778 - -0.5 983,779 + +1.5 983,779 + +0.5 983,783 + -0.7 983,783 + -0.5 983,784 - +0.2 983,791 - -0.3 983,878 + +0.5 983,879 - -0.4 983,879 - +1.1 983,906 + +1.9 983,906 + +0.3 983,907 - -0.0 983,907 - +1.0 983,926 + -1.0 983,927 - -0.4 983,942 - -0.3 983,942 - -0.1 983,944 + +0.1 983,945 - -0.1 984,042 + BNILDI_04965 0.11 -2.0 984,085 + BNILDI_04965 0.19 +0.4 984,085 + BNILDI_04965 0.19 +1.1 984,118 + BNILDI_04965 0.25 -0.4 984,118 + BNILDI_04965 0.25 -0.1 984,175 + BNILDI_04965 0.35 -0.1 984,175 + BNILDI_04965 0.35 +0.0 984,205 + BNILDI_04965 0.40 -0.2 984,205 + BNILDI_04965 0.40 -0.7 984,205 + BNILDI_04965 0.40 -0.0 984,205 + BNILDI_04965 0.40 -0.1 984,206 - BNILDI_04965 0.41 +0.9 984,207 + BNILDI_04965 0.41 -0.3 984,207 + BNILDI_04965 0.41 -0.4 984,208 - BNILDI_04965 0.41 -1.2 984,215 - BNILDI_04965 0.42 -1.3 984,220 + BNILDI_04965 0.43 +0.3 984,221 - BNILDI_04965 0.43 -0.0 984,223 + BNILDI_04965 0.44 +0.2 984,224 - BNILDI_04965 0.44 +0.0 984,224 - BNILDI_04965 0.44 -2.1 984,224 - BNILDI_04965 0.44 -0.2 984,227 + BNILDI_04965 0.44 -1.2 984,227 + BNILDI_04965 0.44 +2.1 984,228 - BNILDI_04965 0.45 +0.1 984,228 - BNILDI_04965 0.45 -0.5 984,228 - BNILDI_04965 0.45 -1.7 984,260 - BNILDI_04965 0.50 +0.2 984,414 - BNILDI_04965 0.78 -1.8 984,414 - BNILDI_04965 0.78 +0.9 984,415 + BNILDI_04965 0.78 -1.1 984,449 + BNILDI_04965 0.84 -1.4 984,575 + -0.6 984,576 - -1.4 984,576 - -0.5 984,630 - -0.8 984,680 - +0.7 984,680 - +0.6 984,697 - -0.2 984,745 + +0.1 984,745 + -0.7 984,768 + -0.2 984,768 + -0.3 984,769 - +0.9 984,802 - -1.4 984,826 + +0.6 984,846 + +0.3 984,846 + -0.0 984,847 - -0.5 984,913 + yifL BNILDI_04970 0.14 +0.5 984,914 - yifL BNILDI_04970 0.14 +0.1 984,916 + yifL BNILDI_04970 0.15 -0.1 984,916 + yifL BNILDI_04970 0.15 +0.1 984,917 - yifL BNILDI_04970 0.16 -4.2 984,920 + yifL BNILDI_04970 0.17 -0.2 984,920 + yifL BNILDI_04970 0.17 +0.0 984,964 - yifL BNILDI_04970 0.39 -1.1 984,964 - yifL BNILDI_04970 0.39 -1.3 984,980 + yifL BNILDI_04970 0.47 +0.1 985,083 + +0.2 985,083 + +2.1
Or see this region's nucleotide sequence