Experiment: Bas68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pitA and uspB are separated by 70 nucleotides uspB and uspA are separated by 390 nucleotides
BNILDI_03185: pitA - inorganic phosphate transporter PitA, at 617,409 to 618,908
pitA
BNILDI_03190: uspB - universal stress protein UspB, at 618,979 to 619,314
uspB
BNILDI_03195: uspA - universal stress protein UspA, at 619,705 to 620,139
uspA
Position (kb) 618
619
620 Strain fitness (log2 ratio) -2
-1
0
1
2 at 618.119 kb on + strand, within pitA at 618.277 kb on + strand, within pitA at 618.536 kb on + strand, within pitA at 618.549 kb on + strand, within pitA at 618.754 kb on + strand, within pitA at 618.755 kb on - strand, within pitA at 618.755 kb on - strand, within pitA at 618.787 kb on + strand at 618.787 kb on + strand at 618.788 kb on - strand at 618.809 kb on + strand at 618.810 kb on - strand at 618.882 kb on + strand at 618.912 kb on + strand at 618.965 kb on + strand at 618.965 kb on + strand at 618.965 kb on + strand at 618.965 kb on + strand at 618.966 kb on - strand at 618.966 kb on - strand at 619.045 kb on - strand, within uspB at 619.115 kb on + strand, within uspB at 619.115 kb on + strand, within uspB at 619.116 kb on - strand, within uspB at 619.116 kb on - strand, within uspB at 619.116 kb on - strand, within uspB at 619.119 kb on + strand, within uspB at 619.119 kb on + strand, within uspB at 619.119 kb on + strand, within uspB at 619.120 kb on - strand, within uspB at 619.120 kb on - strand, within uspB at 619.120 kb on - strand, within uspB at 619.121 kb on + strand, within uspB at 619.122 kb on - strand, within uspB at 619.122 kb on - strand, within uspB at 619.122 kb on - strand, within uspB at 619.226 kb on - strand, within uspB at 619.282 kb on + strand at 619.282 kb on + strand at 619.282 kb on + strand at 619.282 kb on + strand at 619.283 kb on - strand at 619.283 kb on - strand at 619.283 kb on - strand at 619.314 kb on + strand at 619.315 kb on - strand at 619.315 kb on - strand at 619.315 kb on - strand at 619.442 kb on + strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.446 kb on + strand at 619.446 kb on + strand at 619.446 kb on + strand at 619.447 kb on - strand at 619.447 kb on - strand at 619.447 kb on - strand at 619.447 kb on - strand at 619.452 kb on - strand at 619.496 kb on + strand at 619.496 kb on + strand at 619.497 kb on - strand at 619.498 kb on + strand at 619.498 kb on + strand at 619.498 kb on + strand at 619.499 kb on - strand at 619.565 kb on - strand at 619.566 kb on + strand at 619.567 kb on - strand at 619.567 kb on - strand at 619.622 kb on + strand at 619.623 kb on - strand at 619.663 kb on + strand at 619.704 kb on + strand at 619.704 kb on + strand at 619.711 kb on + strand at 619.712 kb on - strand at 619.713 kb on + strand at 619.820 kb on + strand, within uspA at 619.820 kb on + strand, within uspA at 619.826 kb on + strand, within uspA at 619.826 kb on + strand, within uspA at 619.827 kb on - strand, within uspA at 619.831 kb on + strand, within uspA at 619.841 kb on + strand, within uspA at 619.841 kb on + strand, within uspA at 619.842 kb on - strand, within uspA at 619.844 kb on - strand, within uspA at 619.876 kb on - strand, within uspA at 619.876 kb on - strand, within uspA at 620.008 kb on + strand, within uspA at 620.060 kb on + strand, within uspA at 620.060 kb on + strand, within uspA at 620.060 kb on + strand, within uspA at 620.060 kb on + strand, within uspA at 620.061 kb on - strand, within uspA at 620.061 kb on - strand, within uspA at 620.103 kb on + strand at 620.137 kb on + strand at 620.138 kb on - strand at 620.138 kb on - strand at 620.138 kb on - strand at 620.222 kb on - strand at 620.231 kb on - strand at 620.250 kb on + strand at 620.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas68 remove 618,119 + pitA BNILDI_03185 0.47 -1.4 618,277 + pitA BNILDI_03185 0.58 +0.5 618,536 + pitA BNILDI_03185 0.75 -0.8 618,549 + pitA BNILDI_03185 0.76 -0.8 618,754 + pitA BNILDI_03185 0.90 +2.1 618,755 - pitA BNILDI_03185 0.90 -1.1 618,755 - pitA BNILDI_03185 0.90 -0.8 618,787 + +1.5 618,787 + -0.4 618,788 - -0.3 618,809 + +0.1 618,810 - +0.5 618,882 + -1.8 618,912 + +2.2 618,965 + -0.3 618,965 + -0.9 618,965 + +1.8 618,965 + +0.6 618,966 - +0.1 618,966 - -0.5 619,045 - uspB BNILDI_03190 0.20 -0.2 619,115 + uspB BNILDI_03190 0.40 +0.3 619,115 + uspB BNILDI_03190 0.40 -1.2 619,116 - uspB BNILDI_03190 0.41 -0.5 619,116 - uspB BNILDI_03190 0.41 +0.8 619,116 - uspB BNILDI_03190 0.41 -0.3 619,119 + uspB BNILDI_03190 0.42 +0.2 619,119 + uspB BNILDI_03190 0.42 +0.2 619,119 + uspB BNILDI_03190 0.42 +0.0 619,120 - uspB BNILDI_03190 0.42 -0.2 619,120 - uspB BNILDI_03190 0.42 +0.1 619,120 - uspB BNILDI_03190 0.42 -0.4 619,121 + uspB BNILDI_03190 0.42 -0.4 619,122 - uspB BNILDI_03190 0.43 -0.3 619,122 - uspB BNILDI_03190 0.43 -0.4 619,122 - uspB BNILDI_03190 0.43 +0.8 619,226 - uspB BNILDI_03190 0.74 -0.7 619,282 + +1.2 619,282 + -0.5 619,282 + +0.2 619,282 + -1.3 619,283 - -2.1 619,283 - +0.5 619,283 - -2.2 619,314 + -1.0 619,315 - -0.9 619,315 - -1.6 619,315 - -0.3 619,442 + +0.2 619,443 - +2.1 619,443 - +0.4 619,443 - +0.1 619,443 - +0.5 619,443 - +0.1 619,443 - -0.9 619,443 - -0.3 619,446 + +0.1 619,446 + -0.3 619,446 + -0.9 619,447 - +2.1 619,447 - +1.4 619,447 - -0.9 619,447 - -0.6 619,452 - -0.4 619,496 + +0.6 619,496 + +0.4 619,497 - -0.4 619,498 + -0.9 619,498 + -0.7 619,498 + -0.3 619,499 - +0.7 619,565 - -1.9 619,566 + +1.1 619,567 - -1.3 619,567 - -0.8 619,622 + -0.3 619,623 - -1.3 619,663 + +0.3 619,704 + +0.0 619,704 + -0.1 619,711 + -0.6 619,712 - +0.5 619,713 + +0.3 619,820 + uspA BNILDI_03195 0.26 +1.7 619,820 + uspA BNILDI_03195 0.26 -0.2 619,826 + uspA BNILDI_03195 0.28 -0.1 619,826 + uspA BNILDI_03195 0.28 -0.3 619,827 - uspA BNILDI_03195 0.28 +1.1 619,831 + uspA BNILDI_03195 0.29 +0.1 619,841 + uspA BNILDI_03195 0.31 -0.0 619,841 + uspA BNILDI_03195 0.31 -0.4 619,842 - uspA BNILDI_03195 0.31 +0.3 619,844 - uspA BNILDI_03195 0.32 -0.3 619,876 - uspA BNILDI_03195 0.39 -0.5 619,876 - uspA BNILDI_03195 0.39 -0.5 620,008 + uspA BNILDI_03195 0.70 -0.0 620,060 + uspA BNILDI_03195 0.82 +1.7 620,060 + uspA BNILDI_03195 0.82 +1.5 620,060 + uspA BNILDI_03195 0.82 -0.3 620,060 + uspA BNILDI_03195 0.82 -0.3 620,061 - uspA BNILDI_03195 0.82 +1.6 620,061 - uspA BNILDI_03195 0.82 -1.2 620,103 + +0.7 620,137 + +1.1 620,138 - +0.3 620,138 - +0.2 620,138 - -0.4 620,222 - -0.0 620,231 - +0.7 620,250 + -0.2 620,308 - -2.5
Or see this region's nucleotide sequence