Strain Fitness in Escherichia coli ECRC62 around BNILDI_01805

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpoN and BNILDI_01800 are separated by 22 nucleotidesBNILDI_01800 and ptsN are separated by 117 nucleotidesptsN and rapZ are separated by 45 nucleotidesrapZ and npr overlap by 4 nucleotides BNILDI_01795: rpoN - RNA polymerase factor sigma-54, at 349,091 to 350,524 rpoN BNILDI_01800: BNILDI_01800 - Ribosome hibernation promoting factor, at 350,547 to 350,834 _01800 BNILDI_01805: ptsN - PTS IIA-like nitrogen regulatory protein PtsN, at 350,952 to 351,443 ptsN BNILDI_01810: rapZ - RNase adapter RapZ, at 351,489 to 352,343 rapZ BNILDI_01815: npr - PTS phosphocarrier protein NPr, at 352,340 to 352,612 npr Position (kb) 350 351 352Strain fitness (log2 ratio) -2 -1 0 1 2 3at 350.510 kb on - strandat 350.634 kb on + strand, within BNILDI_01800at 350.658 kb on + strand, within BNILDI_01800at 350.658 kb on + strand, within BNILDI_01800at 350.658 kb on + strand, within BNILDI_01800at 350.659 kb on - strand, within BNILDI_01800at 350.659 kb on - strand, within BNILDI_01800at 350.659 kb on - strand, within BNILDI_01800at 350.659 kb on - strand, within BNILDI_01800at 350.757 kb on + strand, within BNILDI_01800at 350.757 kb on + strand, within BNILDI_01800at 350.757 kb on + strand, within BNILDI_01800at 350.758 kb on - strand, within BNILDI_01800at 350.758 kb on - strand, within BNILDI_01800at 350.758 kb on - strand, within BNILDI_01800at 350.758 kb on - strand, within BNILDI_01800at 350.758 kb on - strand, within BNILDI_01800at 350.776 kb on + strand, within BNILDI_01800at 350.776 kb on + strand, within BNILDI_01800at 350.811 kb on - strandat 350.848 kb on + strandat 350.848 kb on + strandat 350.893 kb on + strandat 350.941 kb on + strandat 351.081 kb on - strand, within ptsNat 351.110 kb on + strand, within ptsNat 351.110 kb on + strand, within ptsNat 351.156 kb on - strand, within ptsNat 351.188 kb on + strand, within ptsNat 351.189 kb on - strand, within ptsNat 351.232 kb on + strand, within ptsNat 351.232 kb on + strand, within ptsNat 351.232 kb on + strand, within ptsNat 351.302 kb on + strand, within ptsNat 351.317 kb on + strand, within ptsNat 351.317 kb on + strand, within ptsNat 351.400 kb on - strandat 351.425 kb on + strandat 351.425 kb on + strandat 351.441 kb on + strandat 351.442 kb on - strandat 351.442 kb on - strandat 351.465 kb on - strandat 351.486 kb on + strandat 351.590 kb on - strand, within rapZat 351.665 kb on + strand, within rapZat 351.763 kb on + strand, within rapZat 351.763 kb on + strand, within rapZat 351.764 kb on - strand, within rapZat 352.023 kb on + strand, within rapZat 352.023 kb on + strand, within rapZat 352.024 kb on - strand, within rapZat 352.133 kb on - strand, within rapZat 352.142 kb on + strand, within rapZat 352.142 kb on + strand, within rapZat 352.142 kb on + strand, within rapZat 352.143 kb on - strand, within rapZat 352.171 kb on + strand, within rapZat 352.171 kb on + strand, within rapZat 352.177 kb on + strand, within rapZat 352.181 kb on + strand, within rapZat 352.181 kb on + strand, within rapZat 352.182 kb on - strand, within rapZat 352.182 kb on - strand, within rapZat 352.182 kb on - strand, within rapZat 352.202 kb on + strand, within rapZat 352.230 kb on - strand, within rapZat 352.254 kb on + strand, within rapZat 352.254 kb on + strand, within rapZat 352.255 kb on - strand, within rapZat 352.255 kb on - strand, within rapZat 352.278 kb on + strandat 352.279 kb on - strandat 352.319 kb on + strandat 352.417 kb on - strand, within nprat 352.417 kb on - strand, within npr

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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350,510 - +0.0
350,634 + BNILDI_01800 0.30 +0.2
350,658 + BNILDI_01800 0.39 -0.3
350,658 + BNILDI_01800 0.39 -0.6
350,658 + BNILDI_01800 0.39 +0.5
350,659 - BNILDI_01800 0.39 +1.0
350,659 - BNILDI_01800 0.39 +0.2
350,659 - BNILDI_01800 0.39 +1.0
350,659 - BNILDI_01800 0.39 +0.4
350,757 + BNILDI_01800 0.73 -0.4
350,757 + BNILDI_01800 0.73 -0.2
350,757 + BNILDI_01800 0.73 +1.0
350,758 - BNILDI_01800 0.73 -0.2
350,758 - BNILDI_01800 0.73 +0.4
350,758 - BNILDI_01800 0.73 +3.0
350,758 - BNILDI_01800 0.73 -0.1
350,758 - BNILDI_01800 0.73 -0.1
350,776 + BNILDI_01800 0.80 -1.7
350,776 + BNILDI_01800 0.80 +1.0
350,811 - +1.0
350,848 + -1.9
350,848 + -0.1
350,893 + -0.0
350,941 + -0.6
351,081 - ptsN BNILDI_01805 0.26 -0.3
351,110 + ptsN BNILDI_01805 0.32 +0.3
351,110 + ptsN BNILDI_01805 0.32 -0.6
351,156 - ptsN BNILDI_01805 0.41 +0.0
351,188 + ptsN BNILDI_01805 0.48 +0.2
351,189 - ptsN BNILDI_01805 0.48 -0.3
351,232 + ptsN BNILDI_01805 0.57 +0.5
351,232 + ptsN BNILDI_01805 0.57 +0.6
351,232 + ptsN BNILDI_01805 0.57 +0.3
351,302 + ptsN BNILDI_01805 0.71 -0.0
351,317 + ptsN BNILDI_01805 0.74 +0.4
351,317 + ptsN BNILDI_01805 0.74 -0.8
351,400 - -0.6
351,425 + -0.2
351,425 + +0.3
351,441 + -0.4
351,442 - +0.7
351,442 - -0.4
351,465 - +2.0
351,486 + +0.0
351,590 - rapZ BNILDI_01810 0.12 +2.0
351,665 + rapZ BNILDI_01810 0.21 +0.5
351,763 + rapZ BNILDI_01810 0.32 -2.0
351,763 + rapZ BNILDI_01810 0.32 -0.3
351,764 - rapZ BNILDI_01810 0.32 -1.0
352,023 + rapZ BNILDI_01810 0.62 +0.5
352,023 + rapZ BNILDI_01810 0.62 -1.4
352,024 - rapZ BNILDI_01810 0.63 -0.6
352,133 - rapZ BNILDI_01810 0.75 -1.4
352,142 + rapZ BNILDI_01810 0.76 +2.0
352,142 + rapZ BNILDI_01810 0.76 -0.3
352,142 + rapZ BNILDI_01810 0.76 +2.0
352,143 - rapZ BNILDI_01810 0.76 +1.0
352,171 + rapZ BNILDI_01810 0.80 +2.0
352,171 + rapZ BNILDI_01810 0.80 +0.8
352,177 + rapZ BNILDI_01810 0.80 +0.7
352,181 + rapZ BNILDI_01810 0.81 -0.4
352,181 + rapZ BNILDI_01810 0.81 +0.5
352,182 - rapZ BNILDI_01810 0.81 +1.0
352,182 - rapZ BNILDI_01810 0.81 -0.0
352,182 - rapZ BNILDI_01810 0.81 +1.6
352,202 + rapZ BNILDI_01810 0.83 -0.1
352,230 - rapZ BNILDI_01810 0.87 -0.8
352,254 + rapZ BNILDI_01810 0.89 +2.0
352,254 + rapZ BNILDI_01810 0.89 +0.6
352,255 - rapZ BNILDI_01810 0.90 -1.3
352,255 - rapZ BNILDI_01810 0.90 -0.8
352,278 + +0.4
352,279 - +0.2
352,319 + +0.6
352,417 - npr BNILDI_01815 0.28 -0.0
352,417 - npr BNILDI_01815 0.28 +0.5

Or see this region's nucleotide sequence