Experiment: Bas68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ttdT and tsaD are separated by 42 nucleotides tsaD and rpsU are separated by 236 nucleotides rpsU and dnaG are separated by 110 nucleotides
BNILDI_01050: ttdT - L-tartrate/succinate antiporter, at 201,668 to 203,131
ttdT
BNILDI_01055: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 203,174 to 204,187
tsaD
BNILDI_01060: rpsU - 30S ribosomal protein S21, at 204,424 to 204,639
rpsU
BNILDI_01065: dnaG - DNA primase, at 204,750 to 206,495
dnaG
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1 at 202.321 kb on - strand, within ttdT at 202.396 kb on + strand, within ttdT at 202.430 kb on + strand, within ttdT at 202.430 kb on + strand, within ttdT at 202.431 kb on - strand, within ttdT at 202.431 kb on - strand, within ttdT at 202.583 kb on + strand, within ttdT at 202.584 kb on - strand, within ttdT at 202.584 kb on - strand, within ttdT at 202.584 kb on - strand, within ttdT at 202.584 kb on - strand, within ttdT at 202.666 kb on + strand, within ttdT at 202.669 kb on + strand, within ttdT at 202.744 kb on + strand, within ttdT at 202.745 kb on - strand, within ttdT at 202.830 kb on - strand, within ttdT at 202.865 kb on + strand, within ttdT at 202.865 kb on + strand, within ttdT at 202.865 kb on + strand, within ttdT at 202.978 kb on + strand, within ttdT at 202.979 kb on - strand, within ttdT at 202.986 kb on - strand at 202.986 kb on - strand at 202.986 kb on - strand at 203.012 kb on + strand at 203.013 kb on - strand at 203.074 kb on - strand at 203.129 kb on + strand at 204.198 kb on - strand at 204.208 kb on - strand at 204.223 kb on - strand at 204.244 kb on - strand at 204.244 kb on - strand at 204.278 kb on - strand at 204.278 kb on - strand at 204.280 kb on - strand at 204.294 kb on + strand at 204.294 kb on + strand at 204.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas68 remove 202,321 - ttdT BNILDI_01050 0.45 +0.7 202,396 + ttdT BNILDI_01050 0.50 +1.2 202,430 + ttdT BNILDI_01050 0.52 +0.4 202,430 + ttdT BNILDI_01050 0.52 +0.1 202,431 - ttdT BNILDI_01050 0.52 -0.0 202,431 - ttdT BNILDI_01050 0.52 -0.2 202,583 + ttdT BNILDI_01050 0.62 -0.6 202,584 - ttdT BNILDI_01050 0.63 -1.4 202,584 - ttdT BNILDI_01050 0.63 +0.3 202,584 - ttdT BNILDI_01050 0.63 +1.2 202,584 - ttdT BNILDI_01050 0.63 -0.0 202,666 + ttdT BNILDI_01050 0.68 +0.7 202,669 + ttdT BNILDI_01050 0.68 -1.5 202,744 + ttdT BNILDI_01050 0.73 +0.7 202,745 - ttdT BNILDI_01050 0.74 -0.8 202,830 - ttdT BNILDI_01050 0.79 +0.5 202,865 + ttdT BNILDI_01050 0.82 +0.3 202,865 + ttdT BNILDI_01050 0.82 -0.5 202,865 + ttdT BNILDI_01050 0.82 +0.6 202,978 + ttdT BNILDI_01050 0.89 -0.8 202,979 - ttdT BNILDI_01050 0.90 -2.1 202,986 - +0.6 202,986 - -0.1 202,986 - -0.5 203,012 + +0.7 203,013 - -0.3 203,074 - +1.7 203,129 + +0.5 204,198 - -0.5 204,208 - +0.5 204,223 - -0.1 204,244 - +1.1 204,244 - -0.3 204,278 - -0.6 204,278 - -0.4 204,280 - +0.7 204,294 + +0.6 204,294 + +0.5 204,725 + +0.1
Or see this region's nucleotide sequence