Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_27335 and HEPCGN_27340 are separated by 103 nucleotides HEPCGN_27340 and HEPCGN_27345 are separated by 40 nucleotides HEPCGN_27345 and nqrC are separated by 292 nucleotides
HEPCGN_27335: HEPCGN_27335 - DUF2318 domain-containing protein, at 37,790 to 39,169
_27335
HEPCGN_27340: HEPCGN_27340 - 34 kDa membrane antigen, at 39,273 to 39,800
_27340
HEPCGN_27345: HEPCGN_27345 - High affinity Fe+2 binding protein permease component, at 39,841 to 41,781
_27345
HEPCGN_27350: nqrC - Na(+)-translocating NADH-quinone reductase subunit C, at 42,074 to 42,835
nqrC
Position (kb) 39
40
41
42 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 38.857 kb on + strand, within HEPCGN_27335 at 38.963 kb on + strand, within HEPCGN_27335 at 38.963 kb on + strand, within HEPCGN_27335 at 39.016 kb on + strand, within HEPCGN_27335 at 39.017 kb on - strand, within HEPCGN_27335 at 39.077 kb on + strand at 39.169 kb on + strand at 39.199 kb on - strand at 39.211 kb on + strand at 39.211 kb on + strand at 39.212 kb on - strand at 39.212 kb on - strand at 39.274 kb on + strand at 39.274 kb on + strand at 39.289 kb on + strand at 39.289 kb on + strand at 39.289 kb on + strand at 39.394 kb on + strand, within HEPCGN_27340 at 39.395 kb on - strand, within HEPCGN_27340 at 39.395 kb on - strand, within HEPCGN_27340 at 39.395 kb on - strand, within HEPCGN_27340 at 39.404 kb on + strand, within HEPCGN_27340 at 39.404 kb on + strand, within HEPCGN_27340 at 39.404 kb on + strand, within HEPCGN_27340 at 39.405 kb on - strand, within HEPCGN_27340 at 39.405 kb on - strand, within HEPCGN_27340 at 39.406 kb on + strand, within HEPCGN_27340 at 39.406 kb on + strand, within HEPCGN_27340 at 39.406 kb on + strand, within HEPCGN_27340 at 39.407 kb on - strand, within HEPCGN_27340 at 39.407 kb on - strand, within HEPCGN_27340 at 39.407 kb on - strand, within HEPCGN_27340 at 39.443 kb on - strand, within HEPCGN_27340 at 39.520 kb on + strand, within HEPCGN_27340 at 39.520 kb on + strand, within HEPCGN_27340 at 39.521 kb on - strand, within HEPCGN_27340 at 39.579 kb on + strand, within HEPCGN_27340 at 39.580 kb on - strand, within HEPCGN_27340 at 39.580 kb on - strand, within HEPCGN_27340 at 39.650 kb on + strand, within HEPCGN_27340 at 39.719 kb on - strand, within HEPCGN_27340 at 39.719 kb on - strand, within HEPCGN_27340 at 39.725 kb on + strand, within HEPCGN_27340 at 39.726 kb on - strand, within HEPCGN_27340 at 39.807 kb on + strand at 39.832 kb on - strand at 39.833 kb on + strand at 39.833 kb on + strand at 39.833 kb on + strand at 39.833 kb on + strand at 39.834 kb on - strand at 39.834 kb on - strand at 39.834 kb on - strand at 39.834 kb on - strand at 39.834 kb on - strand at 39.843 kb on - strand at 39.849 kb on + strand at 39.925 kb on + strand at 39.925 kb on + strand at 39.925 kb on + strand at 39.953 kb on + strand at 39.959 kb on + strand at 39.959 kb on + strand at 39.960 kb on - strand at 39.960 kb on - strand at 40.002 kb on + strand at 40.002 kb on + strand at 40.003 kb on - strand at 40.003 kb on - strand at 40.003 kb on - strand at 40.070 kb on + strand, within HEPCGN_27345 at 40.071 kb on - strand, within HEPCGN_27345 at 40.071 kb on - strand, within HEPCGN_27345 at 40.093 kb on - strand, within HEPCGN_27345 at 40.093 kb on - strand, within HEPCGN_27345 at 40.093 kb on - strand, within HEPCGN_27345 at 40.194 kb on + strand, within HEPCGN_27345 at 40.195 kb on - strand, within HEPCGN_27345 at 40.233 kb on - strand, within HEPCGN_27345 at 40.235 kb on + strand, within HEPCGN_27345 at 40.235 kb on + strand, within HEPCGN_27345 at 40.235 kb on + strand, within HEPCGN_27345 at 40.236 kb on - strand, within HEPCGN_27345 at 40.236 kb on - strand, within HEPCGN_27345 at 40.236 kb on - strand, within HEPCGN_27345 at 40.291 kb on + strand, within HEPCGN_27345 at 40.292 kb on - strand, within HEPCGN_27345 at 40.392 kb on + strand, within HEPCGN_27345 at 40.461 kb on + strand, within HEPCGN_27345 at 40.461 kb on + strand, within HEPCGN_27345 at 40.546 kb on - strand, within HEPCGN_27345 at 40.571 kb on + strand, within HEPCGN_27345 at 40.571 kb on + strand, within HEPCGN_27345 at 40.571 kb on + strand, within HEPCGN_27345 at 40.571 kb on + strand, within HEPCGN_27345 at 40.572 kb on - strand, within HEPCGN_27345 at 40.572 kb on - strand, within HEPCGN_27345 at 40.572 kb on - strand, within HEPCGN_27345 at 40.636 kb on - strand, within HEPCGN_27345 at 40.636 kb on - strand, within HEPCGN_27345 at 40.637 kb on + strand, within HEPCGN_27345 at 40.637 kb on + strand, within HEPCGN_27345 at 40.637 kb on + strand, within HEPCGN_27345 at 40.638 kb on - strand, within HEPCGN_27345 at 40.782 kb on - strand, within HEPCGN_27345 at 40.862 kb on + strand, within HEPCGN_27345 at 40.863 kb on - strand, within HEPCGN_27345 at 40.863 kb on - strand, within HEPCGN_27345 at 40.866 kb on + strand, within HEPCGN_27345 at 40.942 kb on - strand, within HEPCGN_27345 at 40.977 kb on + strand, within HEPCGN_27345 at 40.977 kb on + strand, within HEPCGN_27345 at 41.068 kb on - strand, within HEPCGN_27345 at 41.068 kb on - strand, within HEPCGN_27345 at 41.068 kb on - strand, within HEPCGN_27345 at 41.092 kb on - strand, within HEPCGN_27345 at 41.103 kb on - strand, within HEPCGN_27345 at 41.103 kb on - strand, within HEPCGN_27345 at 41.230 kb on - strand, within HEPCGN_27345 at 41.240 kb on + strand, within HEPCGN_27345 at 41.276 kb on + strand, within HEPCGN_27345 at 41.683 kb on - strand at 41.731 kb on + strand at 41.731 kb on + strand at 41.733 kb on + strand at 41.734 kb on - strand at 41.734 kb on - strand at 41.776 kb on - strand at 41.839 kb on + strand at 41.856 kb on - strand at 41.880 kb on - strand at 41.880 kb on - strand at 41.880 kb on - strand at 41.920 kb on + strand at 41.987 kb on + strand at 41.998 kb on + strand at 42.020 kb on + strand at 42.021 kb on - strand at 42.023 kb on + strand at 42.023 kb on + strand at 42.024 kb on - strand at 42.024 kb on - strand at 42.047 kb on - strand at 42.126 kb on + strand at 42.127 kb on - strand at 42.127 kb on - strand at 42.151 kb on + strand, within nqrC at 42.151 kb on + strand, within nqrC at 42.155 kb on - strand, within nqrC at 42.208 kb on + strand, within nqrC at 42.209 kb on - strand, within nqrC at 42.210 kb on + strand, within nqrC at 42.211 kb on - strand, within nqrC at 42.239 kb on + strand, within nqrC at 42.273 kb on - strand, within nqrC at 42.275 kb on + strand, within nqrC at 42.275 kb on + strand, within nqrC at 42.357 kb on + strand, within nqrC at 42.502 kb on + strand, within nqrC at 42.503 kb on - strand, within nqrC at 42.605 kb on + strand, within nqrC at 42.606 kb on - strand, within nqrC at 42.610 kb on + strand, within nqrC at 42.611 kb on - strand, within nqrC at 42.625 kb on + strand, within nqrC at 42.625 kb on + strand, within nqrC at 42.626 kb on - strand, within nqrC at 42.626 kb on - strand, within nqrC at 42.626 kb on - strand, within nqrC at 42.629 kb on - strand, within nqrC at 42.629 kb on - strand, within nqrC at 42.630 kb on + strand, within nqrC at 42.631 kb on - strand, within nqrC at 42.640 kb on - strand, within nqrC at 42.699 kb on - strand, within nqrC at 42.757 kb on + strand, within nqrC at 42.757 kb on + strand, within nqrC at 42.758 kb on - strand, within nqrC
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 38,857 + HEPCGN_27335 0.77 -2.0 38,963 + HEPCGN_27335 0.85 -0.6 38,963 + HEPCGN_27335 0.85 +0.7 39,016 + HEPCGN_27335 0.89 +0.2 39,017 - HEPCGN_27335 0.89 +0.1 39,077 + -0.9 39,169 + +0.1 39,199 - +0.9 39,211 + +1.4 39,211 + -1.1 39,212 - +0.9 39,212 - +1.0 39,274 + -1.7 39,274 + +1.9 39,289 + +1.1 39,289 + -0.1 39,289 + +0.2 39,394 + HEPCGN_27340 0.23 -1.1 39,395 - HEPCGN_27340 0.23 -0.9 39,395 - HEPCGN_27340 0.23 +0.4 39,395 - HEPCGN_27340 0.23 -1.0 39,404 + HEPCGN_27340 0.25 -1.8 39,404 + HEPCGN_27340 0.25 +0.6 39,404 + HEPCGN_27340 0.25 +0.2 39,405 - HEPCGN_27340 0.25 -0.2 39,405 - HEPCGN_27340 0.25 +0.6 39,406 + HEPCGN_27340 0.25 +0.1 39,406 + HEPCGN_27340 0.25 -0.4 39,406 + HEPCGN_27340 0.25 -0.4 39,407 - HEPCGN_27340 0.25 -0.5 39,407 - HEPCGN_27340 0.25 -0.0 39,407 - HEPCGN_27340 0.25 -0.4 39,443 - HEPCGN_27340 0.32 -1.4 39,520 + HEPCGN_27340 0.47 -0.7 39,520 + HEPCGN_27340 0.47 -0.9 39,521 - HEPCGN_27340 0.47 -0.4 39,579 + HEPCGN_27340 0.58 -1.1 39,580 - HEPCGN_27340 0.58 -0.8 39,580 - HEPCGN_27340 0.58 +0.2 39,650 + HEPCGN_27340 0.71 -1.8 39,719 - HEPCGN_27340 0.84 -1.9 39,719 - HEPCGN_27340 0.84 -2.4 39,725 + HEPCGN_27340 0.86 +0.8 39,726 - HEPCGN_27340 0.86 -1.2 39,807 + +0.1 39,832 - +0.2 39,833 + -0.8 39,833 + +2.8 39,833 + +0.6 39,833 + -0.2 39,834 - -0.4 39,834 - +0.1 39,834 - +0.4 39,834 - +0.7 39,834 - -2.0 39,843 - +1.9 39,849 + -0.7 39,925 + +0.1 39,925 + -1.3 39,925 + -1.6 39,953 + +1.1 39,959 + -1.4 39,959 + -0.0 39,960 - -0.0 39,960 - -0.5 40,002 + -1.8 40,002 + -0.2 40,003 - -0.1 40,003 - -0.2 40,003 - -0.2 40,070 + HEPCGN_27345 0.12 +0.9 40,071 - HEPCGN_27345 0.12 -1.0 40,071 - HEPCGN_27345 0.12 +1.2 40,093 - HEPCGN_27345 0.13 +0.1 40,093 - HEPCGN_27345 0.13 -0.6 40,093 - HEPCGN_27345 0.13 -1.5 40,194 + HEPCGN_27345 0.18 +0.9 40,195 - HEPCGN_27345 0.18 -0.2 40,233 - HEPCGN_27345 0.20 +0.1 40,235 + HEPCGN_27345 0.20 +0.4 40,235 + HEPCGN_27345 0.20 -0.3 40,235 + HEPCGN_27345 0.20 +1.1 40,236 - HEPCGN_27345 0.20 -1.0 40,236 - HEPCGN_27345 0.20 +0.0 40,236 - HEPCGN_27345 0.20 +0.1 40,291 + HEPCGN_27345 0.23 +1.6 40,292 - HEPCGN_27345 0.23 +1.2 40,392 + HEPCGN_27345 0.28 +1.4 40,461 + HEPCGN_27345 0.32 +0.3 40,461 + HEPCGN_27345 0.32 -1.6 40,546 - HEPCGN_27345 0.36 +0.1 40,571 + HEPCGN_27345 0.38 +0.1 40,571 + HEPCGN_27345 0.38 +0.2 40,571 + HEPCGN_27345 0.38 +1.1 40,571 + HEPCGN_27345 0.38 -0.8 40,572 - HEPCGN_27345 0.38 +1.2 40,572 - HEPCGN_27345 0.38 -0.4 40,572 - HEPCGN_27345 0.38 +0.3 40,636 - HEPCGN_27345 0.41 +1.2 40,636 - HEPCGN_27345 0.41 -0.9 40,637 + HEPCGN_27345 0.41 -0.4 40,637 + HEPCGN_27345 0.41 -0.9 40,637 + HEPCGN_27345 0.41 -0.0 40,638 - HEPCGN_27345 0.41 +1.2 40,782 - HEPCGN_27345 0.48 -0.4 40,862 + HEPCGN_27345 0.53 +0.9 40,863 - HEPCGN_27345 0.53 -0.2 40,863 - HEPCGN_27345 0.53 +1.3 40,866 + HEPCGN_27345 0.53 +0.0 40,942 - HEPCGN_27345 0.57 +0.7 40,977 + HEPCGN_27345 0.59 +1.6 40,977 + HEPCGN_27345 0.59 -0.1 41,068 - HEPCGN_27345 0.63 +0.8 41,068 - HEPCGN_27345 0.63 +0.9 41,068 - HEPCGN_27345 0.63 +0.3 41,092 - HEPCGN_27345 0.64 +0.1 41,103 - HEPCGN_27345 0.65 -0.7 41,103 - HEPCGN_27345 0.65 +2.5 41,230 - HEPCGN_27345 0.72 +0.2 41,240 + HEPCGN_27345 0.72 +0.5 41,276 + HEPCGN_27345 0.74 +0.2 41,683 - -0.6 41,731 + -0.9 41,731 + -0.9 41,733 + +0.9 41,734 - +0.1 41,734 - +0.8 41,776 - +0.4 41,839 + +0.8 41,856 - +0.4 41,880 - -0.2 41,880 - -0.5 41,880 - +1.0 41,920 + -0.0 41,987 + +0.9 41,998 + -0.0 42,020 + -0.4 42,021 - -0.7 42,023 + -0.4 42,023 + +1.6 42,024 - +0.7 42,024 - +0.1 42,047 - -0.6 42,126 + -0.4 42,127 - -1.4 42,127 - -0.6 42,151 + nqrC HEPCGN_27350 0.10 +0.9 42,151 + nqrC HEPCGN_27350 0.10 +0.8 42,155 - nqrC HEPCGN_27350 0.11 -1.6 42,208 + nqrC HEPCGN_27350 0.18 +1.5 42,209 - nqrC HEPCGN_27350 0.18 +0.5 42,210 + nqrC HEPCGN_27350 0.18 +0.2 42,211 - nqrC HEPCGN_27350 0.18 -0.3 42,239 + nqrC HEPCGN_27350 0.22 -0.1 42,273 - nqrC HEPCGN_27350 0.26 +0.3 42,275 + nqrC HEPCGN_27350 0.26 -0.9 42,275 + nqrC HEPCGN_27350 0.26 +0.6 42,357 + nqrC HEPCGN_27350 0.37 +1.2 42,502 + nqrC HEPCGN_27350 0.56 -0.4 42,503 - nqrC HEPCGN_27350 0.56 -1.1 42,605 + nqrC HEPCGN_27350 0.70 +0.8 42,606 - nqrC HEPCGN_27350 0.70 +0.8 42,610 + nqrC HEPCGN_27350 0.70 +1.0 42,611 - nqrC HEPCGN_27350 0.70 +0.6 42,625 + nqrC HEPCGN_27350 0.72 -0.4 42,625 + nqrC HEPCGN_27350 0.72 -0.2 42,626 - nqrC HEPCGN_27350 0.72 +0.5 42,626 - nqrC HEPCGN_27350 0.72 +0.0 42,626 - nqrC HEPCGN_27350 0.72 +0.8 42,629 - nqrC HEPCGN_27350 0.73 +1.1 42,629 - nqrC HEPCGN_27350 0.73 -0.1 42,630 + nqrC HEPCGN_27350 0.73 +1.6 42,631 - nqrC HEPCGN_27350 0.73 -1.2 42,640 - nqrC HEPCGN_27350 0.74 -0.6 42,699 - nqrC HEPCGN_27350 0.82 +0.1 42,757 + nqrC HEPCGN_27350 0.90 -0.6 42,757 + nqrC HEPCGN_27350 0.90 -0.6 42,758 - nqrC HEPCGN_27350 0.90 +0.7
Or see this region's nucleotide sequence