Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23945

Experiment: TP7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP7
3,574,932	-	ycfH	HEPCGN_23940	0.18	+0.6
3,574,932	-	ycfH	HEPCGN_23940	0.18	+0.8
3,574,932	-	ycfH	HEPCGN_23940	0.18	+1.1
3,575,011	+	ycfH	HEPCGN_23940	0.28	-2.8
3,575,012	-	ycfH	HEPCGN_23940	0.28	-1.3
3,575,086	+	ycfH	HEPCGN_23940	0.37	+1.0
3,575,090	-	ycfH	HEPCGN_23940	0.38	+1.0
3,575,090	-	ycfH	HEPCGN_23940	0.38	-0.1
3,575,103	+	ycfH	HEPCGN_23940	0.39	-2.4
3,575,104	-	ycfH	HEPCGN_23940	0.39	-0.0
3,575,108	+	ycfH	HEPCGN_23940	0.40	+1.7
3,575,137	-	ycfH	HEPCGN_23940	0.44	+0.2
3,575,249	+	ycfH	HEPCGN_23940	0.58	+1.3
3,575,249	+	ycfH	HEPCGN_23940	0.58	+0.4
3,575,249	+	ycfH	HEPCGN_23940	0.58	+0.3
3,575,306	-	ycfH	HEPCGN_23940	0.65	-1.0
3,575,368	+	ycfH	HEPCGN_23940	0.73	+5.6
3,575,410	+	ycfH	HEPCGN_23940	0.78	+0.7
3,575,477	-	ycfH	HEPCGN_23940	0.86	+0.6
3,575,477	-	ycfH	HEPCGN_23940	0.86	-0.8
3,575,477	-	ycfH	HEPCGN_23940	0.86	-0.1
3,575,608	-				-0.1
3,575,612	-				-1.8
3,575,683	+				+0.2
3,575,684	-				-0.8
3,575,684	-				-0.2
3,575,763	-				+0.5
3,575,794	+				+0.6
3,575,795	-				+0.9
3,575,805	+				+0.7
3,575,952	+				+1.0
3,576,012	-				+1.0
3,576,022	-				-1.5
3,576,211	-	ptsG	HEPCGN_23945	0.23	-0.4
3,576,269	-	ptsG	HEPCGN_23945	0.27	+0.6
3,576,269	-	ptsG	HEPCGN_23945	0.27	+0.4
3,576,270	+	ptsG	HEPCGN_23945	0.27	-0.9
3,576,270	+	ptsG	HEPCGN_23945	0.27	+1.5
3,576,271	-	ptsG	HEPCGN_23945	0.27	-0.8
3,576,286	+	ptsG	HEPCGN_23945	0.28	-0.2
3,576,472	+	ptsG	HEPCGN_23945	0.41	+1.0
3,576,527	+	ptsG	HEPCGN_23945	0.45	+1.0
3,576,553	+	ptsG	HEPCGN_23945	0.47	+0.8
3,576,554	-	ptsG	HEPCGN_23945	0.47	+2.0
3,576,554	-	ptsG	HEPCGN_23945	0.47	-0.7
3,576,600	+	ptsG	HEPCGN_23945	0.50	+1.0
3,576,601	-	ptsG	HEPCGN_23945	0.50	-0.0
3,576,601	-	ptsG	HEPCGN_23945	0.50	-0.3
3,576,697	-	ptsG	HEPCGN_23945	0.57	+0.2
3,576,726	+	ptsG	HEPCGN_23945	0.59	+0.5
3,576,814	+	ptsG	HEPCGN_23945	0.65	+0.8
3,576,882	+	ptsG	HEPCGN_23945	0.70	-0.9
3,576,982	+	ptsG	HEPCGN_23945	0.77	+0.5
3,576,983	-	ptsG	HEPCGN_23945	0.77	+1.0
3,577,008	+	ptsG	HEPCGN_23945	0.79	+1.1
3,577,072	-	ptsG	HEPCGN_23945	0.83	+0.8
3,577,125	+	ptsG	HEPCGN_23945	0.87	+1.3
3,577,125	+	ptsG	HEPCGN_23945	0.87	+0.4
3,577,126	-	ptsG	HEPCGN_23945	0.87	+4.8
3,577,143	+	ptsG	HEPCGN_23945	0.88	+0.3
3,577,143	+	ptsG	HEPCGN_23945	0.88	-0.8
3,577,144	-	ptsG	HEPCGN_23945	0.88	-0.3
3,577,144	-	ptsG	HEPCGN_23945	0.88	-0.8
3,577,144	-	ptsG	HEPCGN_23945	0.88	+0.4
3,577,223	+				+0.9
3,577,223	+				+0.5
3,577,260	+				+1.2
3,577,297	+				+0.1
3,577,312	+				-1.2
3,577,320	-				+1.2
3,577,336	+				+0.9
3,577,427	+		HEPCGN_23950	0.18	-0.5
3,577,537	+		HEPCGN_23950	0.56	+0.9
3,577,541	+		HEPCGN_23950	0.57	+1.2
3,577,542	-		HEPCGN_23950	0.58	-0.1
3,577,542	-		HEPCGN_23950	0.58	-1.3
3,577,542	-		HEPCGN_23950	0.58	+1.0
3,577,586	+		HEPCGN_23950	0.73	+0.6
3,577,589	-		HEPCGN_23950	0.74	-0.7
3,577,608	-		HEPCGN_23950	0.80	-0.7
3,577,725	-				-2.0
3,577,764	-				+0.8
3,577,797	-				+1.3
3,577,823	-				+2.0
3,577,823	-				+1.2
3,577,878	-				+0.5
3,577,878	-				-1.3
3,577,981	+	fhuE	HEPCGN_23955	0.13	+0.9
3,578,027	+	fhuE	HEPCGN_23955	0.15	-1.5
3,578,027	+	fhuE	HEPCGN_23955	0.15	+0.9
3,578,029	+	fhuE	HEPCGN_23955	0.15	-0.8
3,578,029	+	fhuE	HEPCGN_23955	0.15	-0.3
3,578,030	-	fhuE	HEPCGN_23955	0.15	-3.0
3,578,030	-	fhuE	HEPCGN_23955	0.15	+0.5
3,578,030	-	fhuE	HEPCGN_23955	0.15	+0.3
3,578,030	-	fhuE	HEPCGN_23955	0.15	-0.3
3,578,110	+	fhuE	HEPCGN_23955	0.20	-1.1
3,578,139	-	fhuE	HEPCGN_23955	0.21	-1.6
3,578,197	+	fhuE	HEPCGN_23955	0.25	-0.6
3,578,197	+	fhuE	HEPCGN_23955	0.25	+0.5
3,578,197	+	fhuE	HEPCGN_23955	0.25	+0.4
3,578,198	-	fhuE	HEPCGN_23955	0.25	+2.1
3,578,210	+	fhuE	HEPCGN_23955	0.25	-0.8
3,578,273	+	fhuE	HEPCGN_23955	0.29	-0.9