Strain Fitness in Escherichia coli ECOR38 around HEPCGN_21200

Experiment: TP7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP7
2,994,336	-	eutQ	HEPCGN_21190	0.75	+0.2
2,994,479	+				+0.6
2,994,480	-				-1.2
2,994,480	-				-1.3
2,994,539	+				+0.7
2,994,539	+				-1.0
2,994,955	-	eutT	HEPCGN_21195	0.55	-0.4
2,995,185	-	eutT	HEPCGN_21195	0.84	+2.5
2,995,187	+	eutT	HEPCGN_21195	0.84	+0.2
2,995,188	-	eutT	HEPCGN_21195	0.84	+0.9
2,995,234	+				+2.1
2,995,234	+				-2.2
2,995,412	-				+1.5
2,995,667	+	pta	HEPCGN_21200	0.35	+0.9
2,995,721	+	pta	HEPCGN_21200	0.40	+0.6
2,995,779	+	pta	HEPCGN_21200	0.46	+0.2
2,996,083	+	pta	HEPCGN_21200	0.76	-1.3
2,996,189	-	pta	HEPCGN_21200	0.86	+2.1
2,996,377	-	eutM	HEPCGN_21205	0.16	-0.3
2,996,377	-	eutM	HEPCGN_21205	0.16	+0.5
2,996,434	+	eutM	HEPCGN_21205	0.33	-1.3
2,996,465	-	eutM	HEPCGN_21205	0.42	+0.1
2,996,489	-	eutM	HEPCGN_21205	0.49	-0.2
2,996,580	+	eutM	HEPCGN_21205	0.76	+0.3
2,996,581	-	eutM	HEPCGN_21205	0.76	+1.1
2,996,711	-				-1.4
2,996,727	-				+0.1
2,996,765	-				-0.2
2,997,050	+				+0.2
2,997,051	-				+0.3
2,997,078	+				+0.3
2,997,102	-				+0.4
2,997,225	-	eutE	HEPCGN_21215	0.11	-1.0
2,997,225	-	eutE	HEPCGN_21215	0.11	-1.5
2,997,236	+	eutE	HEPCGN_21215	0.12	+0.7
2,997,237	-	eutE	HEPCGN_21215	0.12	+1.3