Strain Fitness in Escherichia coli ECOR38 around HEPCGN_17855

Experiment: TP7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP7
2,315,211	+	gpr	HEPCGN_17850	0.22	-0.1
2,315,212	-	gpr	HEPCGN_17850	0.23	+1.6
2,315,375	+	gpr	HEPCGN_17850	0.38	+1.4
2,315,432	-	gpr	HEPCGN_17850	0.44	-0.2
2,315,449	-	gpr	HEPCGN_17850	0.45	+0.6
2,315,527	+	gpr	HEPCGN_17850	0.53	+0.2
2,315,528	-	gpr	HEPCGN_17850	0.53	+1.3
2,315,588	+	gpr	HEPCGN_17850	0.59	+0.1
2,315,611	+	gpr	HEPCGN_17850	0.61	+0.2
2,315,619	-	gpr	HEPCGN_17850	0.62	+1.7
2,315,626	+	gpr	HEPCGN_17850	0.62	+0.2
2,315,626	+	gpr	HEPCGN_17850	0.62	+0.4
2,315,626	+	gpr	HEPCGN_17850	0.62	-2.3
2,315,627	-	gpr	HEPCGN_17850	0.62	-1.6
2,315,678	+	gpr	HEPCGN_17850	0.67	+0.2
2,315,679	-	gpr	HEPCGN_17850	0.67	-0.5
2,315,679	-	gpr	HEPCGN_17850	0.67	+0.5
2,315,714	+	gpr	HEPCGN_17850	0.71	+2.7
2,315,715	-	gpr	HEPCGN_17850	0.71	-0.3
2,315,715	-	gpr	HEPCGN_17850	0.71	+1.4
2,315,739	-	gpr	HEPCGN_17850	0.73	-0.8
2,315,867	+	gpr	HEPCGN_17850	0.85	-0.4
2,316,219	+				+0.7
2,316,228	+				+0.4
2,316,229	-				-0.6
2,316,231	+				-1.1
2,316,336	+	dLH	HEPCGN_17855	0.18	+1.6
2,316,337	-	dLH	HEPCGN_17855	0.18	-1.5
2,316,355	+	dLH	HEPCGN_17855	0.20	-1.0
2,316,356	-	dLH	HEPCGN_17855	0.20	-0.9
2,316,387	+	dLH	HEPCGN_17855	0.24	-0.1
2,316,388	-	dLH	HEPCGN_17855	0.24	-0.2
2,316,388	-	dLH	HEPCGN_17855	0.24	+0.3
2,316,388	-	dLH	HEPCGN_17855	0.24	-1.4
2,316,425	-	dLH	HEPCGN_17855	0.28	+0.4
2,316,425	-	dLH	HEPCGN_17855	0.28	+1.1
2,316,432	+	dLH	HEPCGN_17855	0.29	+0.2
2,316,618	-	dLH	HEPCGN_17855	0.50	-1.9
2,316,680	+	dLH	HEPCGN_17855	0.57	+0.2
2,316,716	+	dLH	HEPCGN_17855	0.61	+0.2
2,316,798	+	dLH	HEPCGN_17855	0.70	-1.6
2,316,901	-	dLH	HEPCGN_17855	0.82	-0.7
2,316,926	+	dLH	HEPCGN_17855	0.85	-0.3
2,316,926	+	dLH	HEPCGN_17855	0.85	-0.2
2,316,927	-	dLH	HEPCGN_17855	0.85	+1.1
2,316,933	+	dLH	HEPCGN_17855	0.85	+2.4
2,316,942	+	dLH	HEPCGN_17855	0.86	-0.7
2,316,943	-	dLH	HEPCGN_17855	0.87	+0.3
2,316,943	-	dLH	HEPCGN_17855	0.87	-0.1
2,316,943	-	dLH	HEPCGN_17855	0.87	-0.5
2,316,944	+	dLH	HEPCGN_17855	0.87	-1.4
2,316,944	+	dLH	HEPCGN_17855	0.87	+1.6
2,316,945	-	dLH	HEPCGN_17855	0.87	-1.9
2,316,945	-	dLH	HEPCGN_17855	0.87	-1.1
2,316,993	+				+0.9
2,317,050	+				-0.5
2,317,068	+				+0.7
2,317,068	+				+1.0
2,317,068	+				-0.6
2,317,069	-				+0.9
2,317,090	+				+0.2
2,317,135	+				-0.1
2,317,218	-	yghW	HEPCGN_17860	0.13	-2.5
2,317,290	-	yghW	HEPCGN_17860	0.38	-0.6
2,317,290	-	yghW	HEPCGN_17860	0.38	+1.4
2,317,425	+	yghW	HEPCGN_17860	0.85	+0.8
2,317,426	-	yghW	HEPCGN_17860	0.85	-0.1
2,317,426	-	yghW	HEPCGN_17860	0.85	-1.3
2,317,475	+				-0.3
2,317,476	-				+0.2
2,317,479	+				-2.0
2,317,479	+				-0.7
2,317,480	-				+0.6
2,317,480	-				-0.2
2,317,480	-				+0.2
2,317,493	-				+0.9
2,317,501	-				+1.2
2,317,505	+				-1.7
2,317,527	-				+1.4
2,317,647	+				+0.9
2,317,652	-				-0.6
2,317,653	+				-0.7
2,317,654	-				+1.9
2,317,667	+				+1.1
2,317,667	+				+0.1
2,317,747	+				-0.9
2,317,748	-				+0.6
2,317,752	-				+0.7
2,317,752	-				+0.9
2,317,787	+	hybO	HEPCGN_17865	0.12	+0.3
2,317,788	-	hybO	HEPCGN_17865	0.12	-0.5
2,317,899	-	hybO	HEPCGN_17865	0.22	+0.1
2,317,965	-	hybO	HEPCGN_17865	0.28	-0.9
2,317,965	-	hybO	HEPCGN_17865	0.28	-0.8
2,317,980	+	hybO	HEPCGN_17865	0.29	+0.3
2,317,992	+	hybO	HEPCGN_17865	0.30	+1.2
2,317,992	+	hybO	HEPCGN_17865	0.30	+1.6