Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fkpA and yheO are separated by 166 nucleotides yheO and tusD overlap by 1 nucleotides tusD and tusD overlap by 1 nucleotides tusD and tusB are separated by 7 nucleotides
HEPCGN_16125: fkpA - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,996,362 to 1,997,174
fkpA
HEPCGN_16130: yheO - Uncharacterized protein YheO, at 1,997,341 to 1,998,063
yheO
HEPCGN_16135: tusD - sulfurtransferase complex subunit TusD, at 1,998,063 to 1,998,449
tusD
HEPCGN_16140: tusD - sulfurtransferase complex subunit TusD, at 1,998,449 to 1,998,808
tusD
HEPCGN_16145: tusB - sulfurtransferase complex subunit TusB, at 1,998,816 to 1,999,103
tusB
Position (kb) 1997
1998
1999 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1996.358 kb on - strand at 1996.376 kb on + strand at 1996.381 kb on + strand at 1996.536 kb on + strand, within fkpA at 1996.536 kb on + strand, within fkpA at 1996.536 kb on + strand, within fkpA at 1996.536 kb on + strand, within fkpA at 1996.536 kb on + strand, within fkpA at 1996.536 kb on + strand, within fkpA at 1996.537 kb on - strand, within fkpA at 1996.537 kb on - strand, within fkpA at 1996.819 kb on + strand, within fkpA at 1996.820 kb on - strand, within fkpA at 1996.820 kb on - strand, within fkpA at 1996.856 kb on + strand, within fkpA at 1996.856 kb on + strand, within fkpA at 1996.881 kb on - strand, within fkpA at 1996.915 kb on - strand, within fkpA at 1996.956 kb on - strand, within fkpA at 1996.956 kb on - strand, within fkpA at 1997.072 kb on + strand, within fkpA at 1997.073 kb on - strand, within fkpA at 1997.073 kb on - strand, within fkpA at 1997.227 kb on + strand at 1997.229 kb on + strand at 1997.229 kb on + strand at 1997.230 kb on - strand at 1997.230 kb on - strand at 1997.233 kb on + strand at 1997.263 kb on + strand at 1997.269 kb on - strand at 1997.269 kb on - strand at 1997.384 kb on + strand at 1997.434 kb on + strand, within yheO at 1997.547 kb on + strand, within yheO at 1997.547 kb on + strand, within yheO at 1997.547 kb on + strand, within yheO at 1997.547 kb on + strand, within yheO at 1997.592 kb on + strand, within yheO at 1997.592 kb on + strand, within yheO at 1997.638 kb on + strand, within yheO at 1997.638 kb on + strand, within yheO at 1997.666 kb on + strand, within yheO at 1997.763 kb on + strand, within yheO at 1997.763 kb on + strand, within yheO at 1997.898 kb on + strand, within yheO at 1997.898 kb on + strand, within yheO at 1997.932 kb on + strand, within yheO at 1998.010 kb on + strand at 1998.016 kb on + strand at 1998.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 1,996,358 - +1.5 1,996,376 + +0.3 1,996,381 + -1.9 1,996,536 + fkpA HEPCGN_16125 0.21 -0.8 1,996,536 + fkpA HEPCGN_16125 0.21 -0.9 1,996,536 + fkpA HEPCGN_16125 0.21 +0.2 1,996,536 + fkpA HEPCGN_16125 0.21 -0.9 1,996,536 + fkpA HEPCGN_16125 0.21 -1.0 1,996,536 + fkpA HEPCGN_16125 0.21 -0.4 1,996,537 - fkpA HEPCGN_16125 0.22 -0.3 1,996,537 - fkpA HEPCGN_16125 0.22 -1.6 1,996,819 + fkpA HEPCGN_16125 0.56 -0.5 1,996,820 - fkpA HEPCGN_16125 0.56 -0.3 1,996,820 - fkpA HEPCGN_16125 0.56 +0.6 1,996,856 + fkpA HEPCGN_16125 0.61 -0.7 1,996,856 + fkpA HEPCGN_16125 0.61 -2.0 1,996,881 - fkpA HEPCGN_16125 0.64 -1.6 1,996,915 - fkpA HEPCGN_16125 0.68 +1.4 1,996,956 - fkpA HEPCGN_16125 0.73 -0.9 1,996,956 - fkpA HEPCGN_16125 0.73 -2.5 1,997,072 + fkpA HEPCGN_16125 0.87 -2.1 1,997,073 - fkpA HEPCGN_16125 0.87 -2.4 1,997,073 - fkpA HEPCGN_16125 0.87 +2.0 1,997,227 + -1.3 1,997,229 + -0.6 1,997,229 + +0.7 1,997,230 - -0.3 1,997,230 - -0.1 1,997,233 + +0.7 1,997,263 + +1.7 1,997,269 - +1.4 1,997,269 - +3.0 1,997,384 + +0.7 1,997,434 + yheO HEPCGN_16130 0.13 +1.7 1,997,547 + yheO HEPCGN_16130 0.28 +1.0 1,997,547 + yheO HEPCGN_16130 0.28 +1.1 1,997,547 + yheO HEPCGN_16130 0.28 +3.4 1,997,547 + yheO HEPCGN_16130 0.28 -0.9 1,997,592 + yheO HEPCGN_16130 0.35 +1.1 1,997,592 + yheO HEPCGN_16130 0.35 +1.4 1,997,638 + yheO HEPCGN_16130 0.41 +0.1 1,997,638 + yheO HEPCGN_16130 0.41 +3.4 1,997,666 + yheO HEPCGN_16130 0.45 -0.6 1,997,763 + yheO HEPCGN_16130 0.58 -0.3 1,997,763 + yheO HEPCGN_16130 0.58 +1.8 1,997,898 + yheO HEPCGN_16130 0.77 +0.9 1,997,898 + yheO HEPCGN_16130 0.77 -0.3 1,997,932 + yheO HEPCGN_16130 0.82 -1.3 1,998,010 + +1.0 1,998,016 + +1.8 1,998,815 + +0.8
Or see this region's nucleotide sequence