Strain Fitness in Escherichia coli ECOR38 around HEPCGN_14530

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_14525 and HEPCGN_14530 are separated by 45 nucleotidesHEPCGN_14530 and rfaC are separated by 69 nucleotides HEPCGN_14525: HEPCGN_14525 - beta1,3-glucosyltransferase, at 1,658,098 to 1,659,081 _14525 HEPCGN_14530: HEPCGN_14530 - O-antigen ligase domain-containing protein, at 1,659,127 to 1,660,380 _14530 HEPCGN_14535: rfaC - lipopolysaccharide heptosyltransferase RfaC, at 1,660,450 to 1,661,421 rfaC Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 1658.233 kb on - strand, within HEPCGN_14525at 1658.338 kb on - strand, within HEPCGN_14525at 1658.363 kb on + strand, within HEPCGN_14525at 1658.452 kb on + strand, within HEPCGN_14525at 1658.476 kb on - strand, within HEPCGN_14525at 1658.477 kb on + strand, within HEPCGN_14525at 1658.504 kb on + strand, within HEPCGN_14525at 1658.673 kb on - strand, within HEPCGN_14525at 1658.719 kb on - strand, within HEPCGN_14525at 1658.800 kb on + strand, within HEPCGN_14525at 1659.014 kb on + strandat 1659.108 kb on + strandat 1659.182 kb on + strandat 1659.183 kb on - strandat 1659.444 kb on + strand, within HEPCGN_14530at 1659.461 kb on + strand, within HEPCGN_14530at 1659.732 kb on - strand, within HEPCGN_14530at 1659.744 kb on - strand, within HEPCGN_14530at 1660.078 kb on - strand, within HEPCGN_14530at 1660.170 kb on - strand, within HEPCGN_14530at 1660.260 kb on - strandat 1660.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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1,658,233 - HEPCGN_14525 0.14 +6.3
1,658,338 - HEPCGN_14525 0.24 +4.5
1,658,363 + HEPCGN_14525 0.27 +6.2
1,658,452 + HEPCGN_14525 0.36 +7.0
1,658,476 - HEPCGN_14525 0.38 +0.5
1,658,477 + HEPCGN_14525 0.39 +6.2
1,658,504 + HEPCGN_14525 0.41 +5.6
1,658,673 - HEPCGN_14525 0.58 +6.1
1,658,719 - HEPCGN_14525 0.63 +6.0
1,658,800 + HEPCGN_14525 0.71 +5.0
1,659,014 + +5.2
1,659,108 + +0.2
1,659,182 + +5.6
1,659,183 - +6.0
1,659,444 + HEPCGN_14530 0.25 +2.5
1,659,461 + HEPCGN_14530 0.27 +4.1
1,659,732 - HEPCGN_14530 0.48 +3.8
1,659,744 - HEPCGN_14530 0.49 +5.0
1,660,078 - HEPCGN_14530 0.76 +0.9
1,660,170 - HEPCGN_14530 0.83 +6.0
1,660,260 - +5.4
1,660,278 - +3.8

Or see this region's nucleotide sequence