Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09795 and fecE are separated by 557 nucleotides fecE and fecD are separated by 0 nucleotides fecD and fecC overlap by 4 nucleotides
HEPCGN_09795: HEPCGN_09795 - KpLE2 phage-like element, at 705,156 to 705,413
_09795
HEPCGN_09800: fecE - Fe(3+) dicitrate ABC transporter ATP-binding protein FecE, at 705,971 to 706,738
fecE
HEPCGN_09805: fecD - Fe(3+) dicitrate ABC transporter permease subunit FecD, at 706,739 to 707,695
fecD
HEPCGN_09810: fecC - iron-dicitrate ABC transporter permease FecC, at 707,692 to 708,690
fecC
Position (kb) 705
706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 704.972 kb on + strand at 704.972 kb on + strand at 704.973 kb on - strand at 704.998 kb on + strand at 704.998 kb on + strand at 704.998 kb on + strand at 705.035 kb on + strand at 705.067 kb on + strand at 705.068 kb on - strand at 705.109 kb on + strand at 705.121 kb on + strand at 705.244 kb on - strand, within HEPCGN_09795 at 705.374 kb on + strand, within HEPCGN_09795 at 705.374 kb on + strand, within HEPCGN_09795 at 705.409 kb on + strand at 705.409 kb on + strand at 705.410 kb on - strand at 705.410 kb on - strand at 705.410 kb on - strand at 705.411 kb on + strand at 705.430 kb on + strand at 705.445 kb on + strand at 705.449 kb on + strand at 705.449 kb on + strand at 705.449 kb on + strand at 705.450 kb on - strand at 705.450 kb on - strand at 705.450 kb on - strand at 705.450 kb on - strand at 705.450 kb on - strand at 705.453 kb on + strand at 705.454 kb on - strand at 705.659 kb on - strand at 705.659 kb on - strand at 705.659 kb on - strand at 705.659 kb on - strand at 705.721 kb on + strand at 705.723 kb on + strand at 705.723 kb on + strand at 705.723 kb on + strand at 705.723 kb on + strand at 705.800 kb on + strand at 705.823 kb on - strand at 705.862 kb on + strand at 705.868 kb on + strand at 705.972 kb on + strand at 705.981 kb on - strand at 706.017 kb on - strand at 706.017 kb on - strand at 706.144 kb on + strand, within fecE at 706.236 kb on + strand, within fecE at 706.237 kb on - strand, within fecE at 706.256 kb on + strand, within fecE at 706.257 kb on - strand, within fecE at 706.257 kb on - strand, within fecE at 706.257 kb on - strand, within fecE at 706.259 kb on + strand, within fecE at 706.382 kb on - strand, within fecE at 706.382 kb on - strand, within fecE at 706.481 kb on + strand, within fecE at 706.482 kb on - strand, within fecE at 706.537 kb on + strand, within fecE at 706.537 kb on + strand, within fecE at 706.537 kb on + strand, within fecE at 706.537 kb on + strand, within fecE at 706.538 kb on - strand, within fecE at 706.538 kb on - strand, within fecE at 706.538 kb on - strand, within fecE at 706.538 kb on - strand, within fecE at 706.563 kb on - strand, within fecE at 706.563 kb on - strand, within fecE at 706.604 kb on + strand, within fecE at 706.604 kb on + strand, within fecE at 706.689 kb on - strand at 706.689 kb on - strand at 706.705 kb on - strand at 706.740 kb on + strand at 706.741 kb on - strand at 706.741 kb on - strand at 706.828 kb on + strand at 706.829 kb on - strand at 706.930 kb on + strand, within fecD at 706.930 kb on + strand, within fecD at 706.951 kb on + strand, within fecD at 706.984 kb on + strand, within fecD at 707.120 kb on + strand, within fecD at 707.121 kb on - strand, within fecD at 707.232 kb on + strand, within fecD at 707.233 kb on - strand, within fecD at 707.233 kb on - strand, within fecD at 707.324 kb on + strand, within fecD at 707.324 kb on + strand, within fecD at 707.325 kb on - strand, within fecD at 707.396 kb on + strand, within fecD at 707.396 kb on + strand, within fecD at 707.548 kb on - strand, within fecD at 707.562 kb on + strand, within fecD at 707.562 kb on + strand, within fecD at 707.562 kb on + strand, within fecD at 707.563 kb on - strand, within fecD at 707.563 kb on - strand, within fecD at 707.563 kb on - strand, within fecD at 707.566 kb on - strand, within fecD at 707.566 kb on - strand, within fecD at 707.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 704,972 + +0.6 704,972 + -0.1 704,973 - +0.6 704,998 + -0.7 704,998 + +1.0 704,998 + -0.6 705,035 + -2.0 705,067 + +0.8 705,068 - -1.0 705,109 + +0.3 705,121 + -0.7 705,244 - HEPCGN_09795 0.34 -1.0 705,374 + HEPCGN_09795 0.84 +2.4 705,374 + HEPCGN_09795 0.84 -2.4 705,409 + -0.6 705,409 + +0.3 705,410 - +0.7 705,410 - -0.6 705,410 - -0.3 705,411 + -0.2 705,430 + -2.3 705,445 + +0.6 705,449 + -2.6 705,449 + +0.5 705,449 + -0.5 705,450 - +0.6 705,450 - -0.3 705,450 - -3.0 705,450 - +0.3 705,450 - -0.3 705,453 + -1.4 705,454 - +0.8 705,659 - +1.7 705,659 - +0.6 705,659 - -1.2 705,659 - +0.0 705,721 + -0.2 705,723 + -0.3 705,723 + -0.6 705,723 + +0.3 705,723 + -0.6 705,800 + +0.1 705,823 - -1.6 705,862 + +0.4 705,868 + -1.8 705,972 + +1.2 705,981 - -0.5 706,017 - +0.5 706,017 - -1.2 706,144 + fecE HEPCGN_09800 0.23 -3.0 706,236 + fecE HEPCGN_09800 0.35 -1.5 706,237 - fecE HEPCGN_09800 0.35 -2.0 706,256 + fecE HEPCGN_09800 0.37 -0.3 706,257 - fecE HEPCGN_09800 0.37 -0.9 706,257 - fecE HEPCGN_09800 0.37 +1.9 706,257 - fecE HEPCGN_09800 0.37 -1.1 706,259 + fecE HEPCGN_09800 0.38 -1.1 706,382 - fecE HEPCGN_09800 0.54 +0.5 706,382 - fecE HEPCGN_09800 0.54 -0.7 706,481 + fecE HEPCGN_09800 0.66 -0.4 706,482 - fecE HEPCGN_09800 0.67 +0.7 706,537 + fecE HEPCGN_09800 0.74 -1.6 706,537 + fecE HEPCGN_09800 0.74 +0.7 706,537 + fecE HEPCGN_09800 0.74 -0.3 706,537 + fecE HEPCGN_09800 0.74 -0.2 706,538 - fecE HEPCGN_09800 0.74 -1.3 706,538 - fecE HEPCGN_09800 0.74 -1.3 706,538 - fecE HEPCGN_09800 0.74 -0.4 706,538 - fecE HEPCGN_09800 0.74 -1.4 706,563 - fecE HEPCGN_09800 0.77 -0.0 706,563 - fecE HEPCGN_09800 0.77 -0.8 706,604 + fecE HEPCGN_09800 0.82 -0.6 706,604 + fecE HEPCGN_09800 0.82 -0.9 706,689 - -0.2 706,689 - +0.4 706,705 - +0.0 706,740 + -1.0 706,741 - +0.0 706,741 - +0.5 706,828 + -1.8 706,829 - -1.9 706,930 + fecD HEPCGN_09805 0.20 -0.2 706,930 + fecD HEPCGN_09805 0.20 -1.4 706,951 + fecD HEPCGN_09805 0.22 -0.4 706,984 + fecD HEPCGN_09805 0.26 +1.2 707,120 + fecD HEPCGN_09805 0.40 +1.1 707,121 - fecD HEPCGN_09805 0.40 -1.2 707,232 + fecD HEPCGN_09805 0.52 -0.3 707,233 - fecD HEPCGN_09805 0.52 -1.7 707,233 - fecD HEPCGN_09805 0.52 -0.2 707,324 + fecD HEPCGN_09805 0.61 -0.9 707,324 + fecD HEPCGN_09805 0.61 -0.7 707,325 - fecD HEPCGN_09805 0.61 -1.3 707,396 + fecD HEPCGN_09805 0.69 -2.1 707,396 + fecD HEPCGN_09805 0.69 -1.4 707,548 - fecD HEPCGN_09805 0.85 -0.8 707,562 + fecD HEPCGN_09805 0.86 -1.0 707,562 + fecD HEPCGN_09805 0.86 -2.7 707,562 + fecD HEPCGN_09805 0.86 -0.9 707,563 - fecD HEPCGN_09805 0.86 +0.1 707,563 - fecD HEPCGN_09805 0.86 -0.4 707,563 - fecD HEPCGN_09805 0.86 -1.3 707,566 - fecD HEPCGN_09805 0.86 -3.6 707,566 - fecD HEPCGN_09805 0.86 +0.6 707,640 - +0.1
Or see this region's nucleotide sequence