Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gntP and HEPCGN_09585 overlap by 96 nucleotides HEPCGN_09585 and fimH are separated by 21 nucleotides fimH and fimG are separated by 19 nucleotides fimG and fimF are separated by 12 nucleotides
HEPCGN_09580: gntP - gluconate permease GntP, at 656,521 to 657,864
gntP
HEPCGN_09585: HEPCGN_09585 - hypothetical protein, at 657,769 to 658,092
_09585
HEPCGN_09590: fimH - type 1 fimbria D-mannose specific adhesin FimH, at 658,114 to 659,016
fimH
HEPCGN_09595: fimG - type 1 fimbria minor subunit FimG, at 659,036 to 659,539
fimG
HEPCGN_09600: fimF - type 1 fimbria minor subunit FimF, at 659,552 to 660,082
fimF
Position (kb) 658
659
660 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 657.171 kb on - strand, within gntP at 657.174 kb on + strand, within gntP at 657.180 kb on + strand, within gntP at 657.180 kb on + strand, within gntP at 657.181 kb on - strand, within gntP at 657.234 kb on + strand, within gntP at 657.330 kb on + strand, within gntP at 657.528 kb on + strand, within gntP at 657.538 kb on + strand, within gntP at 657.538 kb on + strand, within gntP at 657.539 kb on - strand, within gntP at 657.622 kb on - strand, within gntP at 657.846 kb on + strand at 657.847 kb on - strand at 657.858 kb on - strand at 657.863 kb on - strand at 657.863 kb on - strand at 658.068 kb on - strand at 658.116 kb on - strand at 658.141 kb on - strand at 658.180 kb on - strand at 658.180 kb on - strand at 658.180 kb on - strand at 658.187 kb on + strand at 658.188 kb on - strand at 658.210 kb on + strand, within fimH at 658.211 kb on - strand, within fimH at 658.260 kb on + strand, within fimH at 658.261 kb on - strand, within fimH at 658.286 kb on - strand, within fimH at 658.367 kb on + strand, within fimH at 658.367 kb on + strand, within fimH at 658.368 kb on - strand, within fimH at 658.368 kb on - strand, within fimH at 658.404 kb on + strand, within fimH at 658.483 kb on - strand, within fimH at 658.542 kb on + strand, within fimH at 658.542 kb on + strand, within fimH at 658.543 kb on - strand, within fimH at 658.544 kb on + strand, within fimH at 658.545 kb on - strand, within fimH at 658.545 kb on - strand, within fimH at 658.566 kb on + strand, within fimH at 658.580 kb on - strand, within fimH at 658.670 kb on + strand, within fimH at 658.714 kb on - strand, within fimH at 658.714 kb on - strand, within fimH at 658.725 kb on - strand, within fimH at 658.725 kb on - strand, within fimH at 658.729 kb on + strand, within fimH at 658.790 kb on + strand, within fimH at 658.846 kb on + strand, within fimH at 658.892 kb on + strand, within fimH at 658.923 kb on + strand, within fimH at 658.924 kb on - strand, within fimH at 659.004 kb on + strand at 659.018 kb on - strand at 659.018 kb on - strand at 659.043 kb on + strand at 659.044 kb on - strand at 659.047 kb on + strand at 659.048 kb on - strand at 659.049 kb on + strand at 659.050 kb on - strand at 659.050 kb on - strand at 659.180 kb on - strand, within fimG at 659.247 kb on + strand, within fimG at 659.248 kb on - strand, within fimG at 659.514 kb on - strand at 659.514 kb on - strand at 659.553 kb on + strand at 659.576 kb on - strand at 659.590 kb on + strand at 659.590 kb on + strand at 659.591 kb on - strand at 659.591 kb on - strand at 659.738 kb on + strand, within fimF at 659.968 kb on + strand, within fimF at 659.988 kb on + strand, within fimF at 659.988 kb on + strand, within fimF at 660.001 kb on + strand, within fimF at 660.002 kb on - strand, within fimF at 660.002 kb on - strand, within fimF
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 657,171 - gntP HEPCGN_09580 0.48 -1.0 657,174 + gntP HEPCGN_09580 0.49 -0.9 657,180 + gntP HEPCGN_09580 0.49 -0.6 657,180 + gntP HEPCGN_09580 0.49 +0.5 657,181 - gntP HEPCGN_09580 0.49 +2.4 657,234 + gntP HEPCGN_09580 0.53 -0.5 657,330 + gntP HEPCGN_09580 0.60 +0.8 657,528 + gntP HEPCGN_09580 0.75 -2.4 657,538 + gntP HEPCGN_09580 0.76 -2.8 657,538 + gntP HEPCGN_09580 0.76 +0.5 657,539 - gntP HEPCGN_09580 0.76 -0.0 657,622 - gntP HEPCGN_09580 0.82 -3.5 657,846 + -0.6 657,847 - -0.7 657,858 - -0.3 657,863 - -2.0 657,863 - -0.2 658,068 - +0.5 658,116 - +0.0 658,141 - -1.5 658,180 - -1.8 658,180 - -0.8 658,180 - +0.4 658,187 + -1.4 658,188 - +1.0 658,210 + fimH HEPCGN_09590 0.11 +1.3 658,211 - fimH HEPCGN_09590 0.11 +0.6 658,260 + fimH HEPCGN_09590 0.16 -0.5 658,261 - fimH HEPCGN_09590 0.16 +1.4 658,286 - fimH HEPCGN_09590 0.19 +1.5 658,367 + fimH HEPCGN_09590 0.28 +0.5 658,367 + fimH HEPCGN_09590 0.28 +4.4 658,368 - fimH HEPCGN_09590 0.28 -1.1 658,368 - fimH HEPCGN_09590 0.28 +0.2 658,404 + fimH HEPCGN_09590 0.32 -0.8 658,483 - fimH HEPCGN_09590 0.41 +0.0 658,542 + fimH HEPCGN_09590 0.47 -1.9 658,542 + fimH HEPCGN_09590 0.47 +0.3 658,543 - fimH HEPCGN_09590 0.48 -0.2 658,544 + fimH HEPCGN_09590 0.48 -0.2 658,545 - fimH HEPCGN_09590 0.48 +0.6 658,545 - fimH HEPCGN_09590 0.48 +0.5 658,566 + fimH HEPCGN_09590 0.50 -1.7 658,580 - fimH HEPCGN_09590 0.52 +0.6 658,670 + fimH HEPCGN_09590 0.62 -1.5 658,714 - fimH HEPCGN_09590 0.66 +1.4 658,714 - fimH HEPCGN_09590 0.66 -0.6 658,725 - fimH HEPCGN_09590 0.68 -1.0 658,725 - fimH HEPCGN_09590 0.68 -0.0 658,729 + fimH HEPCGN_09590 0.68 +1.4 658,790 + fimH HEPCGN_09590 0.75 -0.6 658,846 + fimH HEPCGN_09590 0.81 -0.5 658,892 + fimH HEPCGN_09590 0.86 +2.4 658,923 + fimH HEPCGN_09590 0.90 -1.6 658,924 - fimH HEPCGN_09590 0.90 +0.1 659,004 + -1.3 659,018 - -1.3 659,018 - +0.1 659,043 + -0.3 659,044 - +0.3 659,047 + -0.2 659,048 - -0.7 659,049 + +1.3 659,050 - -1.4 659,050 - +0.9 659,180 - fimG HEPCGN_09595 0.29 -1.0 659,247 + fimG HEPCGN_09595 0.42 -1.6 659,248 - fimG HEPCGN_09595 0.42 +0.1 659,514 - +2.2 659,514 - +2.7 659,553 + +0.7 659,576 - +1.9 659,590 + -0.0 659,590 + +1.3 659,591 - +0.8 659,591 - +1.3 659,738 + fimF HEPCGN_09600 0.35 +0.8 659,968 + fimF HEPCGN_09600 0.78 +0.4 659,988 + fimF HEPCGN_09600 0.82 +0.2 659,988 + fimF HEPCGN_09600 0.82 -1.3 660,001 + fimF HEPCGN_09600 0.85 +0.6 660,002 - fimF HEPCGN_09600 0.85 +1.8 660,002 - fimF HEPCGN_09600 0.85 -1.0
Or see this region's nucleotide sequence