Strain Fitness in Escherichia coli ECOR38 around HEPCGN_09020

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnhaA and HEPCGN_09020 are separated by 251 nucleotidesHEPCGN_09020 and HEPCGN_09025 are separated by 129 nucleotides HEPCGN_09015: nhaA - Na+/H+ antiporter NhaA, at 550,068 to 551,234 nhaA HEPCGN_09020: HEPCGN_09020 - cytoplasmic protein, at 551,486 to 552,730 _09020 HEPCGN_09025: HEPCGN_09025 - arylsulfatase, at 552,860 to 554,353 _09025 Position (kb) 551 552 553Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 550.526 kb on + strand, within nhaAat 550.526 kb on + strand, within nhaAat 550.527 kb on - strand, within nhaAat 550.610 kb on + strand, within nhaAat 550.612 kb on + strand, within nhaAat 550.698 kb on + strand, within nhaAat 550.699 kb on - strand, within nhaAat 550.707 kb on - strand, within nhaAat 550.754 kb on + strand, within nhaAat 550.755 kb on - strand, within nhaAat 550.889 kb on + strand, within nhaAat 550.889 kb on + strand, within nhaAat 551.052 kb on + strand, within nhaAat 551.153 kb on + strandat 551.180 kb on + strandat 551.187 kb on - strandat 551.210 kb on + strandat 551.277 kb on + strandat 551.409 kb on - strandat 551.430 kb on - strandat 551.488 kb on - strandat 551.519 kb on - strandat 551.522 kb on + strandat 551.597 kb on - strandat 551.680 kb on - strand, within HEPCGN_09020at 551.754 kb on + strand, within HEPCGN_09020at 551.754 kb on + strand, within HEPCGN_09020at 551.754 kb on + strand, within HEPCGN_09020at 551.887 kb on + strand, within HEPCGN_09020at 551.892 kb on + strand, within HEPCGN_09020at 551.979 kb on - strand, within HEPCGN_09020at 552.029 kb on - strand, within HEPCGN_09020at 552.087 kb on + strand, within HEPCGN_09020at 552.106 kb on - strand, within HEPCGN_09020at 552.199 kb on + strand, within HEPCGN_09020at 552.200 kb on - strand, within HEPCGN_09020at 552.281 kb on - strand, within HEPCGN_09020at 552.283 kb on - strand, within HEPCGN_09020at 552.419 kb on + strand, within HEPCGN_09020at 552.463 kb on - strand, within HEPCGN_09020at 552.716 kb on + strandat 552.767 kb on - strandat 552.886 kb on + strandat 552.931 kb on + strandat 552.934 kb on - strandat 552.951 kb on + strandat 552.952 kb on - strandat 552.983 kb on + strandat 553.023 kb on + strand, within HEPCGN_09025at 553.023 kb on + strand, within HEPCGN_09025at 553.023 kb on + strand, within HEPCGN_09025at 553.024 kb on - strand, within HEPCGN_09025at 553.025 kb on + strand, within HEPCGN_09025at 553.029 kb on + strand, within HEPCGN_09025at 553.029 kb on + strand, within HEPCGN_09025at 553.046 kb on - strand, within HEPCGN_09025at 553.241 kb on - strand, within HEPCGN_09025at 553.241 kb on - strand, within HEPCGN_09025at 553.310 kb on - strand, within HEPCGN_09025at 553.364 kb on + strand, within HEPCGN_09025at 553.364 kb on + strand, within HEPCGN_09025at 553.487 kb on - strand, within HEPCGN_09025at 553.487 kb on - strand, within HEPCGN_09025at 553.494 kb on - strand, within HEPCGN_09025at 553.536 kb on + strand, within HEPCGN_09025at 553.537 kb on - strand, within HEPCGN_09025at 553.537 kb on - strand, within HEPCGN_09025at 553.547 kb on - strand, within HEPCGN_09025at 553.583 kb on + strand, within HEPCGN_09025at 553.618 kb on - strand, within HEPCGN_09025at 553.618 kb on - strand, within HEPCGN_09025at 553.626 kb on + strand, within HEPCGN_09025at 553.626 kb on + strand, within HEPCGN_09025at 553.627 kb on - strand, within HEPCGN_09025at 553.675 kb on + strand, within HEPCGN_09025

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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550,526 + nhaA HEPCGN_09015 0.39 -0.8
550,526 + nhaA HEPCGN_09015 0.39 -0.6
550,527 - nhaA HEPCGN_09015 0.39 -1.4
550,610 + nhaA HEPCGN_09015 0.46 +0.6
550,612 + nhaA HEPCGN_09015 0.47 +1.2
550,698 + nhaA HEPCGN_09015 0.54 -1.4
550,699 - nhaA HEPCGN_09015 0.54 -0.9
550,707 - nhaA HEPCGN_09015 0.55 -2.5
550,754 + nhaA HEPCGN_09015 0.59 -1.6
550,755 - nhaA HEPCGN_09015 0.59 -0.4
550,889 + nhaA HEPCGN_09015 0.70 -1.3
550,889 + nhaA HEPCGN_09015 0.70 +0.3
551,052 + nhaA HEPCGN_09015 0.84 +1.4
551,153 + +1.5
551,180 + +0.3
551,187 - -0.2
551,210 + +0.8
551,277 + +1.6
551,409 - -0.2
551,430 - -0.9
551,488 - -0.0
551,519 - +0.5
551,522 + -0.4
551,597 - -0.2
551,680 - HEPCGN_09020 0.16 -0.1
551,754 + HEPCGN_09020 0.22 +0.6
551,754 + HEPCGN_09020 0.22 +0.3
551,754 + HEPCGN_09020 0.22 -0.6
551,887 + HEPCGN_09020 0.32 -0.5
551,892 + HEPCGN_09020 0.33 -0.6
551,979 - HEPCGN_09020 0.40 -0.4
552,029 - HEPCGN_09020 0.44 +1.2
552,087 + HEPCGN_09020 0.48 +0.8
552,106 - HEPCGN_09020 0.50 +0.4
552,199 + HEPCGN_09020 0.57 -0.9
552,200 - HEPCGN_09020 0.57 +1.3
552,281 - HEPCGN_09020 0.64 +0.6
552,283 - HEPCGN_09020 0.64 -0.8
552,419 + HEPCGN_09020 0.75 -1.0
552,463 - HEPCGN_09020 0.78 -0.2
552,716 + -1.2
552,767 - +2.0
552,886 + -0.3
552,931 + -1.1
552,934 - +0.8
552,951 + +0.2
552,952 - +0.8
552,983 + -0.6
553,023 + HEPCGN_09025 0.11 +0.3
553,023 + HEPCGN_09025 0.11 -1.2
553,023 + HEPCGN_09025 0.11 +0.3
553,024 - HEPCGN_09025 0.11 -1.4
553,025 + HEPCGN_09025 0.11 +0.1
553,029 + HEPCGN_09025 0.11 -0.1
553,029 + HEPCGN_09025 0.11 -2.9
553,046 - HEPCGN_09025 0.12 -0.6
553,241 - HEPCGN_09025 0.26 -0.7
553,241 - HEPCGN_09025 0.26 +0.2
553,310 - HEPCGN_09025 0.30 +1.9
553,364 + HEPCGN_09025 0.34 -0.2
553,364 + HEPCGN_09025 0.34 -0.0
553,487 - HEPCGN_09025 0.42 +0.4
553,487 - HEPCGN_09025 0.42 -1.0
553,494 - HEPCGN_09025 0.42 -0.2
553,536 + HEPCGN_09025 0.45 +0.6
553,537 - HEPCGN_09025 0.45 -2.2
553,537 - HEPCGN_09025 0.45 -1.9
553,547 - HEPCGN_09025 0.46 -0.1
553,583 + HEPCGN_09025 0.48 +1.2
553,618 - HEPCGN_09025 0.51 +0.2
553,618 - HEPCGN_09025 0.51 -2.7
553,626 + HEPCGN_09025 0.51 -0.4
553,626 + HEPCGN_09025 0.51 +2.7
553,627 - HEPCGN_09025 0.51 -0.4
553,675 + HEPCGN_09025 0.55 -1.0

Or see this region's nucleotide sequence