Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_06240 and HEPCGN_06245 overlap by 26 nucleotides HEPCGN_06245 and tnp-ISNCY are separated by 177 nucleotides tnp-ISNCY and tnp-ISSd1 are separated by 61 nucleotides tnp-ISSd1 and tnp-IS600 are separated by 35 nucleotides
HEPCGN_06240: HEPCGN_06240 - hypothetical protein, at 1,120,707 to 1,120,886
_06240
HEPCGN_06245: HEPCGN_06245 - hypothetical protein, at 1,120,861 to 1,121,043
_06245
HEPCGN_06255: tnp-ISNCY - ISNCY family transposase, at 1,121,221 to 1,122,444
tnp-ISNCY
HEPCGN_06260: tnp-ISSd1 - IS3 family ISSd1 transposase, at 1,122,506 to 1,122,808
tnp-ISSd1
HEPCGN_06265: tnp-IS600 - IS3 family IS600 transposase, at 1,122,844 to 1,123,662
tnp-IS600
Position (kb) 1121
1122
1123 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1120.450 kb on + strand at 1120.463 kb on + strand at 1120.512 kb on + strand at 1120.598 kb on - strand at 1120.609 kb on - strand at 1120.641 kb on + strand at 1120.642 kb on - strand at 1120.645 kb on + strand at 1120.646 kb on - strand at 1120.648 kb on - strand at 1120.705 kb on + strand at 1120.760 kb on + strand, within HEPCGN_06240 at 1120.785 kb on + strand, within HEPCGN_06240 at 1120.785 kb on + strand, within HEPCGN_06240 at 1120.828 kb on + strand, within HEPCGN_06240 at 1120.829 kb on - strand, within HEPCGN_06240 at 1120.885 kb on - strand at 1120.908 kb on + strand, within HEPCGN_06245 at 1120.961 kb on - strand, within HEPCGN_06245 at 1121.115 kb on + strand at 1121.116 kb on - strand at 1121.144 kb on + strand at 1121.151 kb on - strand at 1121.163 kb on + strand at 1121.185 kb on + strand at 1121.250 kb on + strand at 1121.394 kb on + strand, within tnp-ISNCY at 1121.470 kb on - strand, within tnp-ISNCY at 1121.543 kb on + strand, within tnp-ISNCY at 1121.587 kb on - strand, within tnp-ISNCY at 1121.588 kb on + strand, within tnp-ISNCY at 1121.588 kb on + strand, within tnp-ISNCY at 1121.588 kb on + strand, within tnp-ISNCY at 1121.589 kb on - strand, within tnp-ISNCY at 1121.589 kb on - strand, within tnp-ISNCY at 1121.590 kb on + strand, within tnp-ISNCY at 1121.617 kb on + strand, within tnp-ISNCY at 1121.683 kb on - strand, within tnp-ISNCY at 1121.787 kb on + strand, within tnp-ISNCY at 1121.816 kb on - strand, within tnp-ISNCY at 1121.833 kb on - strand, within tnp-ISNCY at 1121.834 kb on + strand, within tnp-ISNCY at 1122.006 kb on + strand, within tnp-ISNCY at 1122.048 kb on + strand, within tnp-ISNCY at 1122.059 kb on - strand, within tnp-ISNCY at 1122.060 kb on + strand, within tnp-ISNCY at 1122.090 kb on + strand, within tnp-ISNCY at 1122.096 kb on + strand, within tnp-ISNCY at 1122.139 kb on + strand, within tnp-ISNCY at 1122.140 kb on - strand, within tnp-ISNCY at 1122.141 kb on + strand, within tnp-ISNCY at 1122.142 kb on - strand, within tnp-ISNCY at 1122.153 kb on - strand, within tnp-ISNCY at 1122.263 kb on + strand, within tnp-ISNCY at 1122.264 kb on - strand, within tnp-ISNCY at 1122.289 kb on - strand, within tnp-ISNCY at 1122.421 kb on + strand at 1122.421 kb on + strand at 1122.422 kb on - strand at 1122.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 1,120,450 + -1.9 1,120,463 + -1.1 1,120,512 + -1.1 1,120,598 - +0.3 1,120,609 - -1.2 1,120,641 + -2.1 1,120,642 - +1.4 1,120,645 + -0.6 1,120,646 - -0.1 1,120,648 - +0.9 1,120,705 + -0.2 1,120,760 + HEPCGN_06240 0.29 -1.9 1,120,785 + HEPCGN_06240 0.43 +0.2 1,120,785 + HEPCGN_06240 0.43 -2.0 1,120,828 + HEPCGN_06240 0.67 -1.3 1,120,829 - HEPCGN_06240 0.68 -0.4 1,120,885 - +2.2 1,120,908 + HEPCGN_06245 0.26 +0.3 1,120,961 - HEPCGN_06245 0.55 -1.9 1,121,115 + -1.1 1,121,116 - -0.9 1,121,144 + -1.1 1,121,151 - -2.2 1,121,163 + +0.9 1,121,185 + +2.0 1,121,250 + +0.9 1,121,394 + tnp-ISNCY HEPCGN_06255 0.14 -0.7 1,121,470 - tnp-ISNCY HEPCGN_06255 0.20 -1.6 1,121,543 + tnp-ISNCY HEPCGN_06255 0.26 +0.8 1,121,587 - tnp-ISNCY HEPCGN_06255 0.30 -1.5 1,121,588 + tnp-ISNCY HEPCGN_06255 0.30 +0.7 1,121,588 + tnp-ISNCY HEPCGN_06255 0.30 -1.1 1,121,588 + tnp-ISNCY HEPCGN_06255 0.30 -1.6 1,121,589 - tnp-ISNCY HEPCGN_06255 0.30 +0.6 1,121,589 - tnp-ISNCY HEPCGN_06255 0.30 -1.7 1,121,590 + tnp-ISNCY HEPCGN_06255 0.30 +1.4 1,121,617 + tnp-ISNCY HEPCGN_06255 0.32 -0.3 1,121,683 - tnp-ISNCY HEPCGN_06255 0.38 +0.3 1,121,787 + tnp-ISNCY HEPCGN_06255 0.46 +1.2 1,121,816 - tnp-ISNCY HEPCGN_06255 0.49 +0.9 1,121,833 - tnp-ISNCY HEPCGN_06255 0.50 -0.9 1,121,834 + tnp-ISNCY HEPCGN_06255 0.50 -0.5 1,122,006 + tnp-ISNCY HEPCGN_06255 0.64 -1.0 1,122,048 + tnp-ISNCY HEPCGN_06255 0.68 -1.1 1,122,059 - tnp-ISNCY HEPCGN_06255 0.68 -1.7 1,122,060 + tnp-ISNCY HEPCGN_06255 0.69 -0.9 1,122,090 + tnp-ISNCY HEPCGN_06255 0.71 -0.2 1,122,096 + tnp-ISNCY HEPCGN_06255 0.71 -1.9 1,122,139 + tnp-ISNCY HEPCGN_06255 0.75 +0.9 1,122,140 - tnp-ISNCY HEPCGN_06255 0.75 -0.4 1,122,141 + tnp-ISNCY HEPCGN_06255 0.75 -0.6 1,122,142 - tnp-ISNCY HEPCGN_06255 0.75 -1.6 1,122,153 - tnp-ISNCY HEPCGN_06255 0.76 +0.3 1,122,263 + tnp-ISNCY HEPCGN_06255 0.85 +1.3 1,122,264 - tnp-ISNCY HEPCGN_06255 0.85 -0.2 1,122,289 - tnp-ISNCY HEPCGN_06255 0.87 -0.7 1,122,421 + -2.1 1,122,421 + -0.5 1,122,422 - -0.5 1,122,422 - -1.3
Or see this region's nucleotide sequence