Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03660 and HEPCGN_03665 are separated by 80 nucleotides HEPCGN_03665 and HEPCGN_03670 overlap by 17 nucleotides HEPCGN_03670 and HEPCGN_03675 overlap by 20 nucleotides HEPCGN_03675 and HEPCGN_03680 are separated by 40 nucleotides HEPCGN_03680 and HEPCGN_03685 are separated by 252 nucleotides
HEPCGN_03660: HEPCGN_03660 - transcriptional regulator, at 651,817 to 652,224
_03660
HEPCGN_03665: HEPCGN_03665 - transcriptional regulator, at 652,305 to 652,532
_03665
HEPCGN_03670: HEPCGN_03670 - Putative bacterial toxin ydaT, at 652,516 to 653,037
_03670
HEPCGN_03675: HEPCGN_03675 - Ybl78, at 653,018 to 653,983
_03675
HEPCGN_03680: HEPCGN_03680 - DUF977 domain-containing protein, at 654,024 to 654,446
_03680
HEPCGN_03685: HEPCGN_03685 - SMEK domain-containing protein, at 654,699 to 655,598
_03685
Position (kb) 653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 652.229 kb on - strand at 652.598 kb on + strand, within HEPCGN_03670 at 653.050 kb on + strand at 653.050 kb on + strand at 653.504 kb on - strand, within HEPCGN_03675 at 653.504 kb on - strand, within HEPCGN_03675 at 653.684 kb on + strand, within HEPCGN_03675 at 654.191 kb on - strand, within HEPCGN_03680 at 654.309 kb on - strand, within HEPCGN_03680 at 654.334 kb on + strand, within HEPCGN_03680 at 654.461 kb on - strand at 654.496 kb on - strand at 654.506 kb on + strand at 654.507 kb on - strand at 654.695 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 652,229 - -1.6 652,598 + HEPCGN_03670 0.16 -3.5 653,050 + -1.3 653,050 + -2.1 653,504 - HEPCGN_03675 0.50 +0.1 653,504 - HEPCGN_03675 0.50 -0.8 653,684 + HEPCGN_03675 0.69 -1.2 654,191 - HEPCGN_03680 0.39 -0.2 654,309 - HEPCGN_03680 0.67 -2.0 654,334 + HEPCGN_03680 0.73 -2.9 654,461 - -2.1 654,496 - -0.2 654,506 + +0.9 654,507 - -0.5 654,695 - +0.3
Or see this region's nucleotide sequence