Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02620 and HEPCGN_02625 are separated by 117 nucleotides HEPCGN_02625 and HEPCGN_02630 are separated by 213 nucleotides HEPCGN_02630 and btsS are separated by 221 nucleotides btsS and btsR overlap by 4 nucleotides btsR and yehS are separated by 46 nucleotides
HEPCGN_02620: HEPCGN_02620 - Ybl63, at 426,707 to 427,003
_02620
HEPCGN_02625: HEPCGN_02625 - damage-inducible protein DinI, at 427,121 to 427,369
_02625
HEPCGN_02630: HEPCGN_02630 - IS4 family transposase, at 427,583 to 427,651
_02630
HEPCGN_02635: btsS - two-component regulatory system sensor histidine kinase BtsS, at 427,873 to 429,558
btsS
HEPCGN_02640: btsR - two-component system response regulator BtsR, at 429,555 to 430,274
btsR
HEPCGN_02645: yehS - Uncharacterized protein YehS, at 430,321 to 430,791
yehS
Position (kb) 427
428
429
430 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 427.068 kb on - strand at 427.273 kb on + strand, within HEPCGN_02625 at 427.273 kb on + strand, within HEPCGN_02625 at 427.274 kb on - strand, within HEPCGN_02625 at 427.351 kb on + strand at 427.393 kb on - strand at 427.444 kb on - strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.462 kb on - strand at 427.462 kb on - strand at 427.737 kb on - strand at 427.779 kb on - strand at 427.835 kb on + strand at 427.835 kb on + strand at 427.835 kb on + strand at 427.835 kb on + strand at 427.836 kb on - strand at 427.836 kb on - strand at 427.876 kb on + strand at 427.877 kb on - strand at 427.947 kb on + strand at 427.947 kb on + strand at 427.959 kb on - strand at 428.012 kb on - strand at 428.012 kb on - strand at 428.365 kb on + strand, within btsS at 428.366 kb on - strand, within btsS at 428.391 kb on + strand, within btsS at 428.392 kb on - strand, within btsS at 428.448 kb on + strand, within btsS at 428.448 kb on + strand, within btsS at 428.451 kb on - strand, within btsS at 428.676 kb on - strand, within btsS at 428.701 kb on + strand, within btsS at 428.701 kb on + strand, within btsS at 428.709 kb on - strand, within btsS at 428.951 kb on - strand, within btsS at 429.045 kb on + strand, within btsS at 429.046 kb on - strand, within btsS at 429.094 kb on + strand, within btsS at 429.179 kb on - strand, within btsS at 429.270 kb on + strand, within btsS at 429.403 kb on + strand at 429.459 kb on - strand at 429.514 kb on + strand at 429.568 kb on + strand at 429.568 kb on + strand at 429.590 kb on - strand at 429.664 kb on + strand, within btsR at 429.665 kb on - strand, within btsR at 429.781 kb on - strand, within btsR at 429.782 kb on + strand, within btsR at 429.783 kb on - strand, within btsR at 429.846 kb on + strand, within btsR at 429.971 kb on + strand, within btsR at 429.981 kb on - strand, within btsR at 430.090 kb on + strand, within btsR at 430.091 kb on - strand, within btsR at 430.110 kb on - strand, within btsR at 430.117 kb on + strand, within btsR at 430.118 kb on - strand, within btsR at 430.325 kb on + strand at 430.325 kb on + strand at 430.325 kb on + strand at 430.330 kb on - strand at 430.371 kb on + strand, within yehS at 430.371 kb on + strand, within yehS at 430.390 kb on - strand, within yehS at 430.446 kb on + strand, within yehS at 430.446 kb on + strand, within yehS at 430.447 kb on - strand, within yehS
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 427,068 - -0.6 427,273 + HEPCGN_02625 0.61 +0.8 427,273 + HEPCGN_02625 0.61 +1.5 427,274 - HEPCGN_02625 0.61 -1.2 427,351 + -0.3 427,393 - -0.2 427,444 - -0.8 427,461 + +0.9 427,461 + -0.8 427,461 + +0.3 427,461 + +2.8 427,461 + +0.2 427,461 + +0.5 427,462 - +0.6 427,462 - +0.9 427,737 - -1.4 427,779 - -0.5 427,835 + +2.1 427,835 + +0.4 427,835 + +1.2 427,835 + +0.3 427,836 - -0.4 427,836 - +0.0 427,876 + -0.1 427,877 - +0.4 427,947 + -0.7 427,947 + +0.5 427,959 - -2.7 428,012 - +1.2 428,012 - +0.6 428,365 + btsS HEPCGN_02635 0.29 +1.3 428,366 - btsS HEPCGN_02635 0.29 +0.0 428,391 + btsS HEPCGN_02635 0.31 +1.7 428,392 - btsS HEPCGN_02635 0.31 -0.6 428,448 + btsS HEPCGN_02635 0.34 +0.0 428,448 + btsS HEPCGN_02635 0.34 +1.3 428,451 - btsS HEPCGN_02635 0.34 +2.0 428,676 - btsS HEPCGN_02635 0.48 -0.7 428,701 + btsS HEPCGN_02635 0.49 +0.4 428,701 + btsS HEPCGN_02635 0.49 -1.2 428,709 - btsS HEPCGN_02635 0.50 +0.9 428,951 - btsS HEPCGN_02635 0.64 +0.5 429,045 + btsS HEPCGN_02635 0.70 -1.2 429,046 - btsS HEPCGN_02635 0.70 +1.0 429,094 + btsS HEPCGN_02635 0.72 -0.7 429,179 - btsS HEPCGN_02635 0.77 -2.2 429,270 + btsS HEPCGN_02635 0.83 +1.8 429,403 + +0.7 429,459 - +0.0 429,514 + +1.3 429,568 + +0.4 429,568 + -1.8 429,590 - -0.6 429,664 + btsR HEPCGN_02640 0.15 +0.8 429,665 - btsR HEPCGN_02640 0.15 +1.0 429,781 - btsR HEPCGN_02640 0.31 +0.6 429,782 + btsR HEPCGN_02640 0.32 -0.3 429,783 - btsR HEPCGN_02640 0.32 +1.0 429,846 + btsR HEPCGN_02640 0.40 -0.8 429,971 + btsR HEPCGN_02640 0.58 +0.9 429,981 - btsR HEPCGN_02640 0.59 +1.0 430,090 + btsR HEPCGN_02640 0.74 +1.4 430,091 - btsR HEPCGN_02640 0.74 +2.5 430,110 - btsR HEPCGN_02640 0.77 +1.0 430,117 + btsR HEPCGN_02640 0.78 -0.4 430,118 - btsR HEPCGN_02640 0.78 -0.5 430,325 + -0.1 430,325 + -0.8 430,325 + +0.2 430,330 - +0.5 430,371 + yehS HEPCGN_02645 0.11 -2.5 430,371 + yehS HEPCGN_02645 0.11 +0.3 430,390 - yehS HEPCGN_02645 0.15 -0.3 430,446 + yehS HEPCGN_02645 0.27 +1.0 430,446 + yehS HEPCGN_02645 0.27 +1.6 430,447 - yehS HEPCGN_02645 0.27 +0.3
Or see this region's nucleotide sequence